def _build(self):
self.layout = qt.QHBoxLayout()
self.layout.setContentsMargins(0, 0, 0, 0)
self.label = None
self.button = None
if (self.boolTitle):
self.label = qt.QLabel(self.textTitle, self)
self.label.setMinimumWidth(200)
self.layout.addWidget(self.label)
if (self.boolIcons):
self.save = qt.QPushButton()
self.saveas = qt.QPushButton()
self.load = qt.QPushButton()
self.save.setMaximumWidth(30)
self.saveas.setMaximumWidth(30)
self.load.setMaximumWidth(30)
self.save.setMaximumHeight(30)
self.saveas.setMaximumHeight(30)
self.load.setMaximumHeight(30)
self.save.setFlat(True)
self.saveas.setFlat(True)
self.load.setFlat(True)
if self.pathIcon1 != '':
self.save.setIcon(qt.QIcon(qt.QPixmap(self.pathIcon1)))
if self.pathIcon2 != '':
self.saveas.setIcon(qt.QIcon(qt.QPixmap(self.pathIcon2)))
if self.pathIcon3 != '':
self.load.setIcon(qt.QIcon(qt.QPixmap(self.pathIcon3)))
self.layout.addWidget(self.save)
self.layout.addWidget(self.saveas)
self.layout.addWidget(self.load)
self.setLayout(self.layout)
def _buildMenu(self):
menubar = self.menuBar()
fileMenu = menubar.addMenu('&File')
loadAction = qt.QAction('&Load Slice Image', self)
loadAction.setShortcut('Ctrl+O')
loadAction.setStatusTip('Open 3D Images')
qt.QObject.connect(loadAction, qt.SIGNAL("triggered()"),
self.mainWidget._load)
fileMenu.addAction(loadAction)
loadActionF = qt.QAction('&Load Folders Image', self)
loadActionF.setStatusTip('Open 3D Images')
qt.QObject.connect(loadActionF, qt.SIGNAL("triggered()"),
self.mainWidget._loadFolders)
fileMenu.addAction(loadActionF)
loadDicomAction = qt.QAction('&Load Dicom/nrrd/Mat File', self)
loadDicomAction.setStatusTip('Load Dicom/Mat File')
qt.QObject.connect(loadDicomAction, qt.SIGNAL("triggered()"),
self.mainWidget._loadDicom)
fileMenu.addAction(loadDicomAction)
loadSTLAction = qt.QAction('&Load STL file as Image', self)
loadSTLAction.setStatusTip('Load STL File')
qt.QObject.connect(loadSTLAction, qt.SIGNAL("triggered()"),
self.mainWidget._loadSTL)
fileMenu.addAction(loadSTLAction)
saveAction = qt.QAction('&Save', self)
saveAction.setShortcut('Ctrl+S')
saveAction.setStatusTip('Save ')
qt.QObject.connect(saveAction, qt.SIGNAL("triggered()"),
self.mainWidget._save)
fileMenu.addAction(saveAction)
exitAction = qt.QAction(qt.QIcon('exit.png'), '&Exit', self)
exitAction.setShortcut('Ctrl+Q')
exitAction.setStatusTip('Exit application')
exitAction.triggered.connect(qt.qApp.quit)
fileMenu.addAction(exitAction)
ProcessMenu = menubar.addMenu('&Image Processing')
FormatingMenu = ProcessMenu.addMenu('&Image Format')
cropAction = qt.QAction('&Crop', self)
cropAction.setStatusTip('Crop Volume')
qt.QObject.connect(cropAction, qt.SIGNAL("triggered()"),
self.mainWidget._crop)
FormatingMenu.addAction(cropAction)
fillAction = qt.QAction('&Fill', self)
fillAction.setStatusTip('Fill Volume')
qt.QObject.connect(fillAction, qt.SIGNAL("triggered()"),
self.mainWidget._fill)
FormatingMenu.addAction(fillAction)
resampleAction = qt.QAction('&Resample', self)
qt.QObject.connect(resampleAction, qt.SIGNAL("triggered()"),
self.mainWidget._resample_GUI)
FormatingMenu.addAction(resampleAction)
rotationAction = qt.QAction('&Rotation', self)
qt.QObject.connect(rotationAction, qt.SIGNAL("triggered()"),
self.mainWidget._rotation_GUI)
FormatingMenu.addAction(rotationAction)
equalizeAction = qt.QAction('&Equalize', self)
equalizeAction.setStatusTip(
'Equalize Slices using 1 or 2 uniform zone')
qt.QObject.connect(equalizeAction, qt.SIGNAL("triggered()"),
self.mainWidget._equalize)
FormatingMenu.addAction(equalizeAction)
equalizeActionPath = qt.QAction('&Equalize along Path', self)
equalizeActionPath.setStatusTip('Equalize along path')
qt.QObject.connect(equalizeActionPath, qt.SIGNAL("triggered()"),
self.mainWidget._equalizePath)
FormatingMenu.addAction(equalizeActionPath)
equalizeHistoAction = qt.QAction('&Equalize Histogram', self)
equalizeHistoAction.setStatusTip(
'Put the 2 Main Modes of the histogram to a specific Value')
qt.QObject.connect(equalizeHistoAction, qt.SIGNAL("triggered()"),
self.mainWidget._equalizeHisto)
FormatingMenu.addAction(equalizeHistoAction)
mozaicAction = qt.QAction('&Mozaic', self)
mozaicAction.setStatusTip('Make a Mozaic Stack')
qt.QObject.connect(mozaicAction, qt.SIGNAL("triggered()"),
self.mainWidget._mozaicGUI)
FormatingMenu.addAction(mozaicAction)
stackAction = qt.QAction('&Stack Images', self)
stackAction.setStatusTip('Stack Images Together')
qt.QObject.connect(stackAction, qt.SIGNAL("triggered()"),
self.mainWidget._stack_GUI)
FormatingMenu.addAction(stackAction)
destackAction = qt.QAction('&Destack Images', self)
destackAction.setStatusTip('Destack Images Together')
qt.QObject.connect(destackAction, qt.SIGNAL("triggered()"),
self.mainWidget._destack_GUI)
FormatingMenu.addAction(destackAction)
AnalyseMenu = ProcessMenu.addMenu('&Analyse')
analyseAction = qt.QAction('&Analyse Distribution In ROI', self)
qt.QObject.connect(analyseAction, qt.SIGNAL("triggered()"),
self.mainWidget._analysisROIGUI)
AnalyseMenu.addAction(analyseAction)
analyseLineAction = qt.QAction('&Read Pixels Line', self)
qt.QObject.connect(analyseLineAction, qt.SIGNAL("triggered()"),
self.mainWidget._followLineGUI)
AnalyseMenu.addAction(analyseLineAction)
analyseMaxLineAction = qt.QAction('&Follow Max Value', self)
qt.QObject.connect(analyseMaxLineAction, qt.SIGNAL("triggered()"),
self.mainWidget._followMaxLineGUI)
AnalyseMenu.addAction(analyseMaxLineAction)
histoAction = qt.QAction('&Compute Histogram', self)
qt.QObject.connect(histoAction, qt.SIGNAL("triggered()"),
self.mainWidget._histoGUI)
AnalyseMenu.addAction(histoAction)
fftcorrelationAction = qt.QAction('&Cross FFT Correlation', self)
qt.QObject.connect(fftcorrelationAction, qt.SIGNAL("triggered()"),
self.mainWidget._FFTCORGUI)
AnalyseMenu.addAction(fftcorrelationAction)
mutualInformationAction = qt.QAction(
'&Mutual Information In Between Stack', self)
qt.QObject.connect(mutualInformationAction, qt.SIGNAL("triggered()"),
self.mainWidget._MIGUI)
AnalyseMenu.addAction(mutualInformationAction)
ratioVolMaskAction = qt.QAction('&Local Volume Ratio Mask', self)
qt.QObject.connect(ratioVolMaskAction, qt.SIGNAL("triggered()"),
self.mainWidget._RatioVolMaskGUI)
AnalyseMenu.addAction(ratioVolMaskAction)
ratioMaskAction = qt.QAction('&Local Ratio Mask 2D', self)
qt.QObject.connect(ratioMaskAction, qt.SIGNAL("triggered()"),
self.mainWidget._RatioMaskGUI)
AnalyseMenu.addAction(ratioMaskAction)
SelectionMenu = ProcessMenu.addMenu('&Selection')
smoothAction = qt.QAction('&Smooth Contours', self)
qt.QObject.connect(smoothAction, qt.SIGNAL("triggered()"),
self.mainWidget._smoothContours)
SelectionMenu.addAction(smoothAction)
interpolateAction = qt.QAction('&Interpolate Contours', self)
qt.QObject.connect(interpolateAction, qt.SIGNAL("triggered()"),
self.mainWidget._interpolateContourGUI)
SelectionMenu.addAction(interpolateAction)
interpolateMAction = qt.QAction('&Interpolate Mask', self)
qt.QObject.connect(interpolateMAction, qt.SIGNAL("triggered()"),
self.mainWidget._interpolateMaskGUI)
SelectionMenu.addAction(interpolateMAction)
fftcorrelationAction = qt.QAction('&Cross FFT Correlation', self)
qt.QObject.connect(fftcorrelationAction, qt.SIGNAL("triggered()"),
self.mainWidget._FFTCORGUI)
AnalyseMenu.addAction(fftcorrelationAction)
SegmentationMenu = ProcessMenu.addMenu('&Segmentation')
segment_contour_Action = qt.QAction('&Segmentation From Contour', self)
segment_contour_Action.setStatusTip('Segmentation From Contour')
qt.QObject.connect(segment_contour_Action, qt.SIGNAL("triggered()"),
self.mainWidget._segFromContour)
SegmentationMenu.addAction(segment_contour_Action)
segment_th_Action = qt.QAction('&Threshold ', self)
segment_th_Action.setStatusTip('3D Region Growing')
qt.QObject.connect(segment_th_Action, qt.SIGNAL("triggered()"),
self.mainWidget._th_segmentation_GUI)
SegmentationMenu.addAction(segment_th_Action)
segment_rg_Action = qt.QAction('&3D Region Growing Threathold', self)
segment_rg_Action.setStatusTip('3D Region Growing')
qt.QObject.connect(segment_rg_Action, qt.SIGNAL("triggered()"),
self.mainWidget._rg_segmentation_GUI)
SegmentationMenu.addAction(segment_rg_Action)
segment_rgc_Action = qt.QAction('&3D Region Growing Confidence', self)
segment_rgc_Action.setStatusTip('3D Region Growing')
qt.QObject.connect(segment_rgc_Action, qt.SIGNAL("triggered()"),
self.mainWidget._rgc_segmentation_GUI)
SegmentationMenu.addAction(segment_rgc_Action)
segment_fm_Action = qt.QAction('&Fast Marching', self)
segment_fm_Action.setStatusTip('Fast Marching Segmentation')
qt.QObject.connect(segment_fm_Action, qt.SIGNAL("triggered()"),
self.mainWidget._fm_segmentation_GUI)
SegmentationMenu.addAction(segment_fm_Action)
segment_sd_Action = qt.QAction('&Shape Detection Level Set', self)
segment_sd_Action.setStatusTip('Shape Detection Level Set')
qt.QObject.connect(segment_sd_Action, qt.SIGNAL("triggered()"),
self.mainWidget._sd_segmentation_GUI)
SegmentationMenu.addAction(segment_sd_Action)
segment_geo_Action = qt.QAction('&Geodesic Level Set', self)
segment_geo_Action.setStatusTip('Geodesic Level Set')
qt.QObject.connect(segment_geo_Action, qt.SIGNAL("triggered()"),
self.mainWidget._geo_segmentation_GUI)
SegmentationMenu.addAction(segment_geo_Action)
segment_wh_Action = qt.QAction('&Watershed', self)
segment_wh_Action.setStatusTip('Watershed')
qt.QObject.connect(segment_wh_Action, qt.SIGNAL("triggered()"),
self.mainWidget._wh_segmentation_GUI)
SegmentationMenu.addAction(segment_wh_Action)
EdgeDetectionMenu = ProcessMenu.addMenu('&Edge Detection')
edge_GradientRGau_Action = qt.QAction('&Gradient Recursive Gaussian ',
self)
edge_GradientRGau_Action.setStatusTip('Gradient Recursive Gaussian ')
qt.QObject.connect(edge_GradientRGau_Action, qt.SIGNAL("triggered()"),
self.mainWidget.edge_GradGauss_GUI)
EdgeDetectionMenu.addAction(edge_GradientRGau_Action)
edge_Canny_Action = qt.QAction('&Canny Edge', self)
edge_Canny_Action.setStatusTip('Canny Edge')
qt.QObject.connect(edge_Canny_Action, qt.SIGNAL("triggered()"),
self.mainWidget.edge_Canny_GUI)
EdgeDetectionMenu.addAction(edge_Canny_Action)
Zero_Crossing_Action = qt.QAction('&Zero Crossing Edge', self)
Zero_Crossing_Action.setStatusTip('Zero Crossing Edge')
qt.QObject.connect(Zero_Crossing_Action, qt.SIGNAL("triggered()"),
self.mainWidget.zero_Crossing_GUI)
EdgeDetectionMenu.addAction(Zero_Crossing_Action)
FilterMenu = ProcessMenu.addMenu('&Filter')
filter_ani_diff_Action = qt.QAction('&Anisotropic Diffusion', self)
filter_ani_diff_Action.setStatusTip('Anisotropic Diffusion')
qt.QObject.connect(filter_ani_diff_Action, qt.SIGNAL("triggered()"),
self.mainWidget.filter_anidiff_GUI)
FilterMenu.addAction(filter_ani_diff_Action)
filter_recursiveGauss_Action = qt.QAction('&Recursive Gaussian', self)
filter_recursiveGauss_Action.setStatusTip('Recursive Gaussian')
qt.QObject.connect(filter_recursiveGauss_Action,
qt.SIGNAL("triggered()"),
self.mainWidget.filter_recursiveGauss_GUI)
FilterMenu.addAction(filter_recursiveGauss_Action)
filter_median_Action = qt.QAction('&Median ', self)
filter_median_Action.setStatusTip('Median Filter')
qt.QObject.connect(filter_median_Action, qt.SIGNAL("triggered()"),
self.mainWidget.filter_median_GUI)
FilterMenu.addAction(filter_median_Action)
filter_sigmo_Action = qt.QAction('&Sigmoid Contrast ', self)
filter_sigmo_Action.setStatusTip('Sigmoid Mapping ')
qt.QObject.connect(filter_sigmo_Action, qt.SIGNAL("triggered()"),
self.mainWidget.filter_Sigmo_GUI)
FilterMenu.addAction(filter_sigmo_Action)
filter_wv_Action = qt.QAction('&Wavelet Filtering', self)
filter_wv_Action.setStatusTip('Wavelet Filtering')
qt.QObject.connect(filter_wv_Action, qt.SIGNAL("triggered()"),
self.mainWidget.filter_WL_GUI)
FilterMenu.addAction(filter_wv_Action)
mathAction = qt.QAction('&Math', self)
mathAction.setStatusTip('Volume Simple Math Calculation')
qt.QObject.connect(mathAction, qt.SIGNAL("triggered()"),
self.mainWidget._math_GUI)
ProcessMenu.addAction(mathAction)
ImageRegisteringMenu = ProcessMenu.addMenu('&Image Registration')
registrationAction = qt.QAction(qt.QIcon('morpho.png'),
'&Elastic Registration', self)
qt.QObject.connect(registrationAction, qt.SIGNAL("triggered()"),
self.mainWidget._registration_GUI)
ImageRegisteringMenu.addAction(registrationAction)
morphoAction = qt.QAction(qt.QIcon('morpho.png'),
'&Morphologic Operation', self)
morphoAction.setStatusTip('Volume Morph Operation')
qt.QObject.connect(morphoAction, qt.SIGNAL("triggered()"),
self.mainWidget._morpho_GUI)
ProcessMenu.addAction(morphoAction)
viewMenu = menubar.addMenu('&View')
alphaAction = qt.QAction('&Alpha Map', self)
alphaAction.setStatusTip('Add Colormap Overlay')
qt.QObject.connect(alphaAction, qt.SIGNAL("triggered()"),
self.mainWidget.add_alpha_map_GUI)
viewMenu.addAction(alphaAction)
rmAlphaAction = qt.QAction('&Remove Overlay', self)
rmAlphaAction.setStatusTip('Remove Overlay')
qt.QObject.connect(rmAlphaAction, qt.SIGNAL("triggered()"),
self.mainWidget.remove_alpha_map)
viewMenu.addAction(rmAlphaAction)
StudyMenu = menubar.addMenu('&Study')
venti_Action = qt.QAction('&Ventilation Map', self)
venti_Action.setStatusTip('Compute Ventilation Map')
qt.QObject.connect(venti_Action, qt.SIGNAL("triggered()"),
self.mainWidget.study_venti_GUI)
StudyMenu.addAction(venti_Action)
sVair_Action = qt.QAction('&Test sVair', self)
sVair_Action.setStatusTip('Test sVair')
qt.QObject.connect(sVair_Action, qt.SIGNAL("triggered()"),
self.mainWidget.sVair_GUI)
StudyMenu.addAction(sVair_Action)
density_Action = qt.QAction('&Density Change', self)
density_Action.setStatusTip('Compute Density Change')
qt.QObject.connect(density_Action, qt.SIGNAL("triggered()"),
self.mainWidget.study_density_GUI)
StudyMenu.addAction(density_Action)
macroMenu = menubar.addMenu('&Macros')
RegMenu = macroMenu.addMenu('&CHU Registration Analysis')
regStartAction = qt.QAction('&Start Registration', self)
qt.QObject.connect(regStartAction, qt.SIGNAL("triggered()"),
self.mainWidget.macro2_GUI)
RegMenu.addAction(regStartAction)
regLoadAction = qt.QAction('&Load Segmentation', self)
qt.QObject.connect(regLoadAction, qt.SIGNAL("triggered()"),
self.mainWidget.macro2_loadGUI)
RegMenu.addAction(regLoadAction)
macro3_Action = qt.QAction('&CHU Volume Adipose Tissue', self)
macro3_Action.setStatusTip('CHU Heart Segmentation')
qt.QObject.connect(macro3_Action, qt.SIGNAL("triggered()"),
self.mainWidget.macro3_GUI)
macroMenu.addAction(macro3_Action)
macro5_Action = qt.QAction('&CHU Lung Blood Volume', self)
macro5_Action.setStatusTip('CHU Lung Blood Volume')
qt.QObject.connect(macro5_Action, qt.SIGNAL("triggered()"),
self.mainWidget.macro5_GUI)
macroMenu.addAction(macro5_Action)
# macro4_Action = qt.QAction('&Bronchi Study', self)
# macro4_Action.setStatusTip('Bronchi Study')
# qt.QObject.connect(macro4_Action, qt.SIGNAL("triggered()"), self.mainWidget.macro4_GUI)
# macroMenu.addAction(macro4_Action)
macro1_Action = qt.QAction('&Image Analysis Diffusion', self)
macro1_Action.setStatusTip('Concentration Analysis Diffusion Study')
qt.QObject.connect(macro1_Action, qt.SIGNAL("triggered()"),
self.mainWidget.macro1_GUI)
macroMenu.addAction(macro1_Action)
def __init__(self, parent):
'''
Constructor
'''
qt.QToolBar.__init__(self, parent)
self.setIconSize(qt.QSize(25, 25))
self.zoomAutoAction = qt.QAction(qt.QIcon('Icones/autozoom.png'),
'&Zoom', self)
self.zoomAutoAction.setStatusTip('Fit window')
self.zoomAutoAction.setCheckable(False)
self.zoomAutoAction.setChecked(False)
self.zoomActive = False
qt.QObject.connect(self.zoomAutoAction, qt.SIGNAL("triggered()"),
self.zoomAutoPushed)
self.zone1Action = qt.QAction(qt.QIcon('Icones/zone.png'),
'&ZoneSelection', self)
self.zone1Action.setStatusTip('Select Zone')
self.zone1Action.setCheckable(True)
self.zone1Action.setChecked(False)
qt.QObject.connect(self.zone1Action, qt.SIGNAL("triggered()"),
self.zone1Selected)
self.pointerAction = qt.QAction(qt.QIcon('Icones/cursor.png'),
'&PointerSelection', self)
self.pointerAction.setStatusTip('Select Pointer')
self.pointerAction.setCheckable(True)
self.pointerAction.setChecked(True)
qt.QObject.connect(self.pointerAction, qt.SIGNAL("triggered()"),
self.pointerSelected)
self.drawingAction = qt.QAction(qt.QIcon('Icones/circle18.png'),
'&DrawingSelection', self)
self.drawingAction.setStatusTip('Select Drawing')
self.drawingAction.setCheckable(True)
self.drawingAction.setChecked(False)
qt.QObject.connect(self.drawingAction, qt.SIGNAL("triggered()"),
self.drawingSelected)
self.polygonAction = qt.QAction(qt.QIcon('Icones/polygon.png'),
'&PolygonSelection', self)
self.polygonAction.setStatusTip('Select Polygone')
self.polygonAction.setCheckable(True)
self.polygonAction.setChecked(False)
qt.QObject.connect(self.polygonAction, qt.SIGNAL("triggered()"),
self.polygonSelected)
self.pointRemoveAction = qt.QAction(qt.QIcon('Icones/remove.png'),
'&DeletePoint', self)
self.pointRemoveAction.setStatusTip('remove Point')
self.pointRemoveAction.setCheckable(False)
self.pointRemoveAction.setChecked(False)
self.radius = LabelEditAndButton(True, "", True, str(100), False)
self.doubleSlider = DoubleSlider(self)
self.setMinAndMaxToolBar(0, 0)
self.doubleSlider.setMaximumWidth(800)
self.colorChoice = qt.QComboBox()
self.colormapList = []
colorMapDefault = "GrayLevel", range(256), range(256), range(256)
self.colormapList.append(colorMapDefault)
self.colorChoice.addItems([self.colormapList[0][0]])
self.addColorMap('Jet', './jet_color.txt')
self.addAction(self.zoomAutoAction)
self.addSeparator()
self.addAction(self.pointerAction)
self.addAction(self.zone1Action)
self.addAction(self.drawingAction)
self.ActionRadius = self.addWidget(self.radius)
self.ActionRadius.setVisible(False)
self.addAction(self.polygonAction)
self.addAction(self.pointRemoveAction)
self.addWidget(self.doubleSlider)
self.addWidget(self.colorChoice)