def test_trix_source(self):
""" Test that we can load the datbase up from an XML file.
"""
f = tempfile.mkstemp()
c = Configure()
c['rdf.source'] = 'trix'
c['rdf.store'] = 'default'
c['trix_location'] = f[1]
with open(f[1], 'w') as fo:
fo.write(TD.TriX_data)
connect(conf=c)
c = config()
try:
g = c['rdf.graph']
b = g.query("ASK { ?S ?P ?O }")
for x in b:
self.assertTrue(x)
except ImportError:
pass
finally:
disconnect()
os.unlink(f[1])
def test_translate_data_source_loader(self):
with connect(p(self.testdir, '.pow', 'pow.conf')) as conn:
with transaction.manager:
# Create data sources
ctx = Context(ident='http://example.org/context', conf=conn.conf)
ctx(LFDS)(
ident='http://example.org/lfds',
file_name='Merged_Nuclei_Stained_Worm.zip',
torrent_file_name='d9da5ce947c6f1c127dfcdc2ede63320.torrent')
class DT(DataTranslator):
class_context = ctx.identifier
input_type = LFDS
output_type = LFDS
translator_identifier = 'http://example.org/trans1'
def translate(source):
print(source.full_path())
return source
ctx.mapper.process_class(DT)
dt = ctx(DT)()
# Create a translator
ctx_id = conn.conf['data_context_id']
DT.definition_context.save(conn.conf['rdf.graph'])
main_ctx = Context(ident=ctx_id, conf=conn.conf)
main_ctx.add_import(ctx)
main_ctx.save_imports()
ctx.save()
# Do translation
assertRegexpMatches(
self.sh(
'pow translate http://example.org/trans1 http://example.org/lfds'),
r'Merged_Nuclei_Stained_Worm.zip')
def test_translator_list(self):
expected = URIRef('http://example.org/trans1')
with connect(p(self.testdir, '.pow', 'pow.conf')) as conn:
with transaction.manager:
# Create data sources
ctx = Context(ident='http://example.org/context', conf=conn.conf)
class DT(DataTranslator):
class_context = ctx.identifier
translator_identifier = expected
def translate(source):
pass
ctx.mapper.process_class(DT)
DT.definition_context.save(conn.conf['rdf.graph'])
# Create a translator
dt = ctx(DT)()
ctx_id = conn.conf['data_context_id']
main_ctx = Context(ident=ctx_id, conf=conn.conf)
main_ctx.add_import(ctx)
main_ctx.save_imports()
ctx.save()
# List translators
assertRegexpMatches(
self.sh('pow translator list'),
re.compile('^' + expected.n3() + '$', flags=re.MULTILINE))
def test_l(self):
"""
Test that a property can be loaded when the owning
object doesn't have any other values set
This test is for many objects of the same kind
"""
disconnect()
from random import random
from time import time
# Generate data sets from 10 to 10000 in size
# query for properties
print('starting testl')
class _to(DataObject):
def __init__(self, x=False):
DataObject.__init__(self)
DatatypeProperty('flexo', owner=self)
if x:
self.flexo(x)
# feel free to add more if you have the time
nums = [10, 1e2, 1e3]
connect("tests/testl.conf")
try:
# for 1000, takes about 10 seconds...
for x in nums:
print(
'running ',
x,
'sized test on a ',
Configureable.default['rdf.graph'].store,
'store')
v = values('zim')
for z in range(int(x)):
v.add(_to(random()))
t0 = time()
v.save()
for _ in _to().flexo():
pass
t1 = time()
print("took", t1 - t0, "seconds")
Configureable.default['rdf.graph'].remove((None, None, None))
except:
traceback.print_exc()
disconnect()
def test_l(self):
"""
Test that a property can be loaded when the owning
object doesn't have any other values set
This test is for many objects of the same kind
"""
disconnect()
from random import random
from time import time
# Generate data sets from 10 to 10000 in size
# query for properties
print('starting testl')
class _to(DataObject):
def __init__(self, x=False):
DataObject.__init__(self)
DatatypeProperty('flexo', owner=self)
if x:
self.flexo(x)
# feel free to add more if you have the time
nums = [10, 1e2, 1e3]
connect("tests/testl.conf")
try:
# for 1000, takes about 10 seconds...
for x in nums:
print('running ', x, 'sized test on a ',
Configureable.default['rdf.graph'].store, 'store')
v = values('zim')
for z in range(int(x)):
v.add(_to(random()))
t0 = time()
v.save()
for _ in _to().flexo():
pass
t1 = time()
print("took", t1 - t0, "seconds")
Configureable.default['rdf.graph'].remove((None, None, None))
except:
traceback.print_exc()
disconnect()
def setup():
connect(configFile='tests/data_integrity_test.conf')
def setup():
connect(configFile='tests/data_integrity_test.conf')
def setUp(self):
connect(configFile='tests/data_integrity_test.conf')
self.g = config("rdf.graph")
from __future__ import print_function
from PyOpenWorm import connect, config
from PyOpenWorm.context import Context
from PyOpenWorm.neuron import Neuron
from PyOpenWorm.evidence import Evidence
from PyOpenWorm.document import Document
from PyOpenWorm.website import Website
conn = connect(configFile="default.conf")
print('the graph', conn.conf['rdf.graph'])
def query_context(graph, qctx):
trips = qctx.contents_triples()
lctx = None
for t in trips:
ctxs = graph.contexts(t)
if lctx is None:
lctx = frozenset(ctxs)
continue
if len(lctx) == 0:
return frozenset()
else:
lctx = frozenset(ctxs) & lctx
if len(lctx) == 0:
return lctx
return frozenset() if lctx is None else lctx
qctx = Context()
qctx(Neuron)('AVAL').innexin('UNC-7')
def setUp(self):
connect("tests/test.conf")
def setUp(self):
connect("tests/test.conf")
def setup():
global connection
xfail_without_db()
connection = connect(configFile='tests/data_integrity_test.conf')
def setup():
global connection
xfail_without_db()
connection = connect(configFile='tests/data_integrity_test.conf')
from __future__ import print_function
from PyOpenWorm import connect, config
from PyOpenWorm.context import Context
from PyOpenWorm.neuron import Neuron
from PyOpenWorm.evidence import Evidence
from PyOpenWorm.document import Document
from PyOpenWorm.website import Website
conn = connect(configFile="default.conf")
print('the graph', conn.conf['rdf.graph'])
def query_context(graph, qctx):
trips = qctx.contents_triples()
lctx = None
for t in trips:
ctxs = graph.contexts(t)
if lctx is None:
lctx = frozenset(ctxs)
continue
if len(lctx) == 0:
return frozenset()
else:
lctx = frozenset(ctxs) & lctx
if len(lctx) == 0:
return lctx
return frozenset() if lctx is None else lctx
qctx = Context()