def selectImageDataFile(self):
file_path = os.path.join(self.experiment_file_directory,
self.experiment_file_name + '.hdf5')
image_file_path, _ = QFileDialog.getOpenFileName(
self, "Select image file")
print('User selected image file at {}'.format(image_file_path))
self.image_file_name = os.path.split(image_file_path)[-1]
self.data_directory = os.path.split(image_file_path)[:-1][0]
h5io.attachImageFileName(file_path, self.series_number,
self.image_file_name)
print('Attached image_file_name {} to series {}'.format(
self.image_file_name, self.series_number))
print('Data directory is {}'.format(self.data_directory))
self.currentImageFileNameLabel.setText(self.image_file_name)
# show roi image
if self.series_number is not None:
if self.data_directory is not None: # user has selected a raw data directory
self.plugin.updateImageSeries(
data_directory=self.data_directory,
image_file_name=self.image_file_name,
series_number=self.series_number,
channel=self.current_channel)
self.roi_image = self.plugin.mean_brain
self.zSlider.setValue(0)
self.zSlider.setMaximum(self.roi_image.shape[2] - 1)
self.redrawRoiTraces()
else:
print('Select a data directory before drawing rois')
def load_configuration_window(self) -> None:
self.force_bypass_notification = True
self.configuration_path_input.setText(
QFileDialog.getOpenFileName(
self, "Open Configuration File",
str(pathlib.Path(__file__).parent.resolve()),
"CDS Configuration (*.json);;All Files (*)")[0])
def file_open(self):
self.iw.scene.clear()
self.image_name = QFileDialog.getOpenFileName(self, 'Open File')
self.iw.pixmap = QtGui.QPixmap(self.image_name[0])
self.iw.pixmap_fit = self.iw.pixmap.scaled(
self.iw.pixmap.width(),
self.iw.pixmap.height(),
QtCore.Qt.AspectRatioMode.KeepAspectRatio,
transformMode=QtCore.Qt.TransformationMode.SmoothTransformation)
self.iw.scene.addPixmap(self.iw.pixmap_fit) #add image
self.iw.setScene(self.iw.scene)
#Adjust window size automatically?
self.iw.fitInView(self.iw.scene.sceneRect(), QtCore.Qt.AspectRatioMode.KeepAspectRatio)
self.iw.scene.update()
self.statusbar.showMessage('Select a measurement to make from the toolbar')
self.lengthButton.setEnabled(True)
self.areaButton.setEnabled(True)
self.angleButton.setEnabled(True)
self.exportButton.setEnabled(True)
self.undoButton.setEnabled(True)
self.bezier.setEnabled(True)
self.bezier.setChecked(True)
self.widthsButton.setEnabled(False)
self.angleNames = []
self.areaNames = []
self.lengthNames = []
#self.iw.measurements = [[]]
self.iw.widths = []
self.iw.lengths = [[]]
self.iw.L = posData(
np.empty(shape=(0, 0)), np.empty(shape=(0, 0))) #lengths
self.iw.A = posData(
np.empty(shape=(0, 0)), np.empty(shape=(0, 0))) #area
self.iw.W = posData(
np.empty(shape=(0, 0)), np.empty(shape=(0, 0))) #widths
self.iw.T = angleData(np.empty(shape=(0, 0))) #angles
self.iw.angleValues = np.empty((0,0))
self.iw.areaValues = np.empty((0,0))
self.iw._lastpos = None
self.iw._thispos = None
self.iw.measuring_length = False
self.iw.measuring_area = False
self.iw.measuring_widths = False
self.iw.measuring_angle = False
self.iw._zoom = 0
self.iw.factor = 1.0
self.iw.d = {} #dictionary for line items
self.iw.k = 0 #initialize counter so lines turn yellow
self.iw.m = None
self.iw.scene.realline = None
self.iw.scene.testline = None
self.iw.scene.ellipseItem = None
self.iw.scene.area_ellipseItem = None
self.iw.scene.polyItem = None
self.iw.image_name = None
def load_matching_phase_from_config_task(self):
logger.info("Execute task 'load_matching_phase_from_config_task'.")
path = str(QFileDialog.getOpenFileName(self, "Choose a configuration .json file!")[0])
if path != "":
self.disable_global_input()
# noinspection PyUnresolvedReferences
self.load_matching_phase_from_config.emit(path)
def load_document_base_from_bson_task(self):
logger.info("Execute task 'load_document_base_from_bson_task'.")
path, ok = QFileDialog.getOpenFileName(self, "Choose a document collection .bson file!")
if ok:
self.disable_global_input()
# noinspection PyUnresolvedReferences
self.load_document_base_from_bson.emit(str(path))
def __onLoadMazeButtonPressed(self) -> None:
fileDialog = QFileDialog(self, "Open a maze file…")
filesFilter = "Maze files (*.maze, *.db)"
fileDialog.setFileMode(QFileDialog.FileMode.ExistingFile)
filePath: str = ""
filePath = fileDialog.getOpenFileName(filter=filesFilter)[0]
self.__onMazeFilePathChosen(filePath)
def _load(self):
'''A la hora de realizar la carga del fichero controlo si se produce un mensaje de error y lo muestro'''
try:
file = QFileDialog.getOpenFileName(
self, 'Buscar Archivo', QDir.homePath(),
"All Files (*);;Music Mp3 Files (*.mp3)")
if file:
print("Archivo seleccionado: ", file)
except:
print("Error en la carga de datos.")
def selectDataFile(self):
filePath, _ = QFileDialog.getOpenFileName(
self, "Open experiment (hdf5) file")
self.experiment_file_name = os.path.split(filePath)[1].split('.')[0]
self.experiment_file_directory = os.path.split(filePath)[0]
if self.experiment_file_name != '':
self.currentExperimentLabel.setText(self.experiment_file_name)
self.initializeDataAnalysis()
self.populateGroups()
self.updateExistingRoiSetList()
def set_assister_path():
"""设置辅助登录程序路径"""
assister_path = QFileDialog.getOpenFileName(self, "选择辅助登录程序路径",
self._cwd, "EXE Files (*.exe)")
if not assister_path[0]:
return None
assister_path = os.path.normpath(assister_path[0]) # windows backslash
if assister_path == self._cookie_assister:
return None
self.assister_ed.setText(assister_path)
self._cookie_assister = assister_path
def showDialog(self):
home_dir = str(Path.home())
fname = QFileDialog.getOpenFileName(self, 'Open file', home_dir)
if fname[0]:
f = open(fname[0], 'r')
with f:
data = f.read()
self.textEdit.setText(data)
def openFile(self):
options = QFileDialog.Options.DontUseNativeDialog
file_name, _ = QFileDialog.getOpenFileName(self,
"QFileDialog.getOpenFileName()",
"",
"Python Files (*.py);;All Files (*)",
options=options)
if file_name:
self.setWindowTitle(file_name.split("/")[-1])
with open(file_name) as inputFile:
file_data = inputFile.read()
self.textEdit.clear()
self.textEdit.setPlainText(file_data)
def file_open(self):
path, _ = QFileDialog.getOpenFileName(
self,
"Open file",
"",
"Text documents (*.txt);;All files (*.*)",
)
try:
with open(path, "rU") as f:
text = f.read()
except Exception as e:
self.dialog_critical(str(e))
else:
self.path = path
self.editor.setText(text)
self.update_title()
def openVideoFile(self):
# self.mediaPlayer.setMedia(QMediaContent())
if self.sender() == self.openVideoAction:
self.videoFile, _ = QFileDialog.getOpenFileName(
self, "Open video", QDir.homePath())
# if self.videoFile != '':
# self.setWindowTitle('{} - {}'.format(os.path.basename(self.videoFile),
# os.path.basename(self.projectFile)))
if self.videoFile != '':
self.setWindowTitle('{} - {}'.format(
os.path.basename(self.videoFile),
os.path.basename(self.projectFile)))
self.saveProjectAction.setEnabled(True)
self.maskGenAction.setEnabled(True)
# self.loadGraphAction.setEnabled(True)
# self.saveGraphAction.setEnabled(True)
# self.drawPointAction.setEnabled(True)
# self.drawLineAction.setEnabled(True)
# self.drawZoneAction.setEnabled(True)
creation_datetime, width, height = getVideoMetadata(self.videoFile)
self.videoStartDatetime = self.videoCurrentDatetime = creation_datetime
self.dateLabel.setText(creation_datetime.strftime('%a, %b %d, %Y'))
self.gView.setSceneRect(0, 0, width, height)
self.videoItem = QGraphicsVideoItem()
self.videoItem.setAspectRatioMode(
Qt.AspectRatioMode.KeepAspectRatio)
self.gScene.addItem(self.videoItem)
self.videoItem.mouseMoveEvent = self.gView.mouseMoveEvent
self.videoItem.setSize(QSizeF(width, height))
self.mediaPlayer.setVideoOutput(self.videoItem)
self.mediaPlayer.setSource(QUrl.fromLocalFile(self.videoFile))
self.gView.labelSize = width / 50
self.playButton.setEnabled(True)
# self.gView.setViewport(QOpenGLWidget())
self.mediaPlayer.pause()
def openImage(self):
"""Load a new image into the """
image_file, _ = QFileDialog.getOpenFileName(
self, "Open Image", "",
"PNG Files (*.png);;JPG Files (*.jpeg *.jpg );;Bitmap Files (*.bmp);;\
GIF Files (*.gif)")
if image_file:
# Reset values when opening an image
self.parent.zoom_factor = 1
#self.parent.scroll_area.setVisible(True)
self.parent.print_act.setEnabled(True)
self.parent.updateActions()
# Reset all sliders
self.parent.brightness_slider.setValue(0)
# Get image format
image_format = self.image.format()
self.image = QImage(image_file)
self.original_image = self.image.copy()
#pixmap = QPixmap(image_file)
self.setPixmap(QPixmap().fromImage(self.image))
#image_size = self.image_label.sizeHint()
self.resize(self.pixmap().size())
#self.scroll_area.setMinimumSize(image_size)
#self.image_label.setPixmap(pixmap.scaled(self.image_label.size(),
# Qt.KeepAspectRatio, Qt.SmoothTransformation))
elif image_file == "":
# User selected Cancel
pass
else:
QMessageBox.information(self, "Error", "Unable to open image.",
QMessageBox.Ok)
def get_file(self):
fname, _ = QFileDialog.getOpenFileName(self, "Open file", 'C:\\', 'Image files (*.jpg &.gif)')
self.le.setPixmap(QPixmap(fname))
def openProject(self):
self.projectFile, _ = QFileDialog.getOpenFileName(
self, "Open project file", QDir.homePath(), "Project (*.prj)")
if self.projectFile == '':
return
self.saveProjectAction.setEnabled(True)
self.maskGenAction.setEnabled(True)
# self.loadGraphAction.setEnabled(True)
# self.saveGraphAction.setEnabled(True)
# self.drawPointAction.setEnabled(True)
# self.drawLineAction.setEnabled(True)
# self.drawZoneAction.setEnabled(True)
tree = ET.parse(self.projectFile)
root = tree.getroot()
gItems = []
for elem in root:
subEelTexts = {}
for subelem in elem:
subEelTexts[subelem.tag] = subelem.text
gItems.append([elem.tag, subEelTexts])
for key in gItems:
if key[0] == 'database':
item = key[1]
if item['fileName'] is not None:
self.obsTb.dbFilename = item['fileName']
self.obsTb.opendbFile()
elif key[0] == 'video':
item = key[1]
if item['fileName'] is not None:
self.videoFile = item['fileName']
self.openVideoFile()
self.mediaPlayer.setPosition(int(item['sliderValue']))
if item['fileName'] is not None:
self.loadGraphics()
elif key[0] == 'trajectory':
item = key[1]
if item['metadata'] != None:
self.obsTb.mdbFileLedit.setText(item['metadata'])
self.obsTb.openMdbFile()
self.obsTb.siteNameCombobx.setCurrentIndex(
int(item['site']))
self.obsTb.camViewCombobx.setCurrentIndex(
int(item['cam_view']))
self.obsTb.trjDbCombobx.setCurrentIndex(
int(item['traj_db']))
elif key[0] == 'window':
item = key[1]
x, y = item['mainWin_pos'].split(',')
w, h = item['mainWin_size'].split(',')
self.setGeometry(int(x), int(y), int(w), int(h))
if item['obsTbx_open'] == 'True':
self.obsTb.show()
x, y = item['obsTbx_pos'].split(',')
w, h = item['obsTbx_size'].split(',')
self.obsTb.setGeometry(int(x), int(y), int(w), int(h))
def file_upload(self) -> str:
_file = QFileDialog.getOpenFileName(self, 'Open File', '.')
_name, _ = _file
return _name
def onTreeItemClicked(self, item, column):
file_path = os.path.join(self.experiment_file_directory,
self.experiment_file_name + '.hdf5')
group_path = h5io.getPathFromTreeItem(
self.groupTree.selectedItems()[0])
self.clearRois()
self.series_number = None
if 'series_' in group_path:
self.series_number = int(
group_path.split('series_')[-1].split('/')[0])
if self.plugin.dataIsAttached(file_path, self.series_number):
self.plugin.updateImagingDataObject(
self.experiment_file_directory, self.experiment_file_name,
self.series_number)
# look for image_file_name or ask user to select it
if self.data_directory is not None:
image_file_name = h5io.readImageFileName(
file_path, self.series_number)
if image_file_name is None or image_file_name == '':
image_file_path, _ = QFileDialog.getOpenFileName(
self, "Select image file")
print('User selected image file at {}'.format(
image_file_path))
image_file_name = os.path.split(image_file_path)[-1]
self.data_directory = os.path.split(
image_file_path)[:-1][0]
h5io.attachImageFileName(file_path, self.series_number,
image_file_name)
print('Attached image_file_name {} to series {}'.format(
image_file_name, self.series_number))
print('Data directory is {}'.format(self.data_directory))
self.image_file_name = image_file_name
self.currentImageFileNameLabel.setText(self.image_file_name)
else: # clicked part of the tree upstream of any series
self.series_number = None
if item.parent() is not None:
if item.parent().text(
column) == 'rois': # selected existing roi group
roi_set_name = item.text(column)
# print('Selected roi set {} from series {}'.format(roi_set_name, self.series_number))
self.le_roiSetName.setText(roi_set_name)
roi_set_path = h5io.getPathFromTreeItem(
self.groupTree.selectedItems()[0])
self.loadRois(roi_set_path)
self.redrawRoiTraces()
if group_path != '':
attr_dict = h5io.getAttributesFromGroup(file_path, group_path)
editable_values = True # user can edit metadata
self.populate_attrs(attr_dict=attr_dict,
editable_values=editable_values)
# show roi image
if self.series_number is not None: # Clicked on node of the tree associated with a single series
if self.data_directory is not None: # user has selected a raw data directory
if self.plugin.dataIsAttached(file_path, self.series_number):
self.plugin.updateImageSeries(
data_directory=self.data_directory,
image_file_name=self.image_file_name,
series_number=self.series_number,
channel=self.current_channel)
self.roi_image = self.plugin.mean_brain
self.zSlider.setValue(0)
self.zSlider.setMaximum(self.roi_image.shape[2] - 1)
self.redrawRoiTraces()
else:
print('Attach metadata to file before drawing rois')
else:
print('Select a data directory before drawing rois')
# # # TEST # # #
memory_usage = psutil.Process(os.getpid()).memory_info().rss * 10**-9
print('Current Memory Usage: {:.2f}GB'.format(memory_usage))
sys.stdout.flush()
def _choose_input_file(self):
fname = QFileDialog.getOpenFileName(self, 'Open file', '~',
'Audio Files (*.mp3 *.wav *.ogg)')
self.inputFileName.setText(fname[0])
self._settings.setValue('last_audio_file', fname[0])
def get_file_to_check(self):
file_name, _ = QFileDialog.getOpenFileName(self, 'Datei auswählen')
self.labelFilePath.setText(file_name)
def importData(self) -> None:
# thanks to Aldo Hoeben / fieldOfView for this part of the code
file_name = ""
if VERSION_QT5:
file_name = QFileDialog.getOpenFileName(
parent = None,
caption = catalog.i18nc("@title:window", "Open File"),
directory = self._preferences.getValue("import_export_tools/dialog_path"),
filter = "CSV files (*.csv)",
options = self._dialog_options
)[0]
else:
dialog = QFileDialog()
dialog.setWindowTitle(catalog.i18nc("@title:window", "Open File"))
dialog.setDirectory(self._preferences.getValue("import_export_tools/dialog_path"))
dialog.setNameFilters(["CSV files (*.csv)"])
dialog.setAcceptMode(QFileDialog.AcceptMode.AcceptOpen)
dialog.setFileMode(QFileDialog.FileMode.ExistingFile)
if dialog.exec():
file_name = dialog.selectedFiles()[0]
if not file_name:
Logger.log("d", "No file to import from selected")
return
self._preferences.setValue("import_export_tools/dialog_path", os.path.dirname(file_name))
# -----
machine_manager = CuraApplication.getInstance().getMachineManager()
stack = CuraApplication.getInstance().getGlobalContainerStack()
global_stack = machine_manager.activeMachine
#Get extruder count
extruder_count=stack.getProperty("machine_extruder_count", "value")
#extruders = list(global_stack.extruders.values())
extruder_stack = CuraApplication.getInstance().getExtruderManager().getActiveExtruderStacks()
imported_count = 0
CPro = ""
try:
with open(file_name, 'r', newline='') as csv_file:
C_dialect = csv.Sniffer().sniff(csv_file.read(1024))
# Reset to begining file position
csv_file.seek(0, 0)
Logger.log("d", "Csv Import %s : Delimiter = %s Quotechar = %s", file_name, C_dialect.delimiter, C_dialect.quotechar)
# csv.QUOTE_MINIMAL or csv.QUOTE_NONNUMERIC ?
# csv_reader = csv.reader(csv_file, delimiter=';', quotechar='"', quoting=csv.QUOTE_MINIMAL)
csv_reader = csv.reader(csv_file, dialect=C_dialect)
line_number = -1
for row in csv_reader:
line_number += 1
if line_number == 0:
if len(row) < 4:
continue
else:
# Logger.log("d", "Import Data = %s | %s | %s | %s | %s",row[0], row[1], row[2], row[3], row[4])
try:
#(section, extrud, kkey, ktype, kvalue) = row[0:4]
section=row[0]
extrud=int(row[1])
extrud -= 1
kkey=row[2]
ktype=row[3]
kvalue=row[4]
#Logger.log("d", "Current Data = %s | %d | %s | %s | %s", section,extrud, kkey, ktype, kvalue)
if extrud<extruder_count:
try:
container=extruder_stack[extrud]
try:
prop_value = container.getProperty(kkey, "value")
if prop_value != None :
settable_per_extruder= container.getProperty(kkey, "settable_per_extruder")
# Logger.log("d", "%s settable_per_extruder : %s", kkey, str(settable_per_extruder))
if ktype == "str" or ktype == "enum":
if prop_value != kvalue :
if extrud == 0 : stack.setProperty(kkey,"value",kvalue)
if settable_per_extruder == True :
container.setProperty(kkey,"value",kvalue)
Logger.log("d", "prop_value changed: %s = %s / %s", kkey ,kvalue, prop_value)
else:
Logger.log("d", "%s not settable_per_extruder", kkey)
imported_count += 1
elif ktype == "bool" :
if kvalue == "True" or kvalue == "true" :
C_bool=True
else:
C_bool=False
if prop_value != C_bool :
if extrud == 0 : stack.setProperty(kkey,"value",C_bool)
if settable_per_extruder == True :
container.setProperty(kkey,"value",C_bool)
Logger.log("d", "prop_value changed: %s = %s / %s", kkey ,C_bool, prop_value)
else:
Logger.log("d", "%s not settable_per_extruder", kkey)
imported_count += 1
elif ktype == "int" :
if prop_value != int(kvalue) :
if extrud == 0 : stack.setProperty(kkey,"value",int(kvalue))
if settable_per_extruder == True :
container.setProperty(kkey,"value",int(kvalue))
Logger.log("d", "prop_value changed: %s = %s / %s", kkey ,kvalue, prop_value)
else:
Logger.log("d", "%s not settable_per_extruder", kkey)
imported_count += 1
elif ktype == "float" :
TransVal=round(float(kvalue),4)
if round(prop_value,4) != TransVal :
if extrud == 0 : stack.setProperty(kkey,"value",TransVal)
if settable_per_extruder == True :
container.setProperty(kkey,"value",TransVal)
Logger.log("d", "prop_value changed: %s = %s / %s", kkey ,TransVal, prop_value)
else:
Logger.log("d", "%s not settable_per_extruder", kkey)
imported_count += 1
else :
Logger.log("d", "Value type Else = %d | %s | %s | %s",extrud, kkey, ktype, kvalue)
else:
# Logger.log("d", "Value None = %d | %s | %s | %s",extrud, kkey, ktype, kvalue)
if kkey=="Profile" :
CPro=kvalue
except:
Logger.log("e", "Error kkey: %s" % kkey)
continue
except:
Logger.log("e", "Error Extruder: %s" % row)
continue
except:
Logger.log("e", "Row does not have enough data: %s" % row)
continue
except:
Logger.logException("e", "Could not import settings from the selected file")
return
Message().hide()
Message("Imported profil %d changed keys from %s" % (imported_count, CPro) , title = "Import Export CSV Profiles Tools").show()