class CreateCharWidget(CreateTaskBase):
"""
Descript. :
"""
def __init__(self,parent = None,name = None, fl = 0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_widget = DataPathWidget(self,
data_model = self._path_template, layout = 'vertical')
self._vertical_dimension_widget = loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
# Layout --------------------------------------------------------------
_main_vlayout = QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(2, 2, 2, 2)
_main_vlayout.setSpacing(6)
_main_vlayout.addStretch(0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.\
connect(self.path_template_changed)
self._acq_widget.acqParametersChangedSignal.\
connect(self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
#self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
self._char_widget.characterisation_gbox.toggled.connect(\
self.characterisation_gbox_toggled)
self._char_widget.wait_result_cbx.toggled.connect(\
self.wait_results_cbx_toggled)
self._char_widget.execute_plan_cbx.toggled.connect(\
self.run_diffraction_plan_cbx_toggled)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx,
bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx,
bool, None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox,
int, None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(
queue_model_enumerables.XTAL_SPACEGROUPS
)
self._data_path_widget.data_path_layout.compression_cbox.setVisible(False)
def enable_compression(self, state):
CreateTaskBase.enable_compression(self, False)
def use_induced_burn(self, state):
"""
Descript. :
"""
self._acquisition_parameters.induce_burn = state
def _space_group_change(self, index):
"""
Descript. :
"""
self._char_params.space_group = (
queue_model_enumerables.XTAL_SPACEGROUPS[index]
)
def _set_space_group(self, space_group):
"""
Descript. :
"""
index = 0
if self._vertical_dimension_widget:
if space_group in queue_model_enumerables.XTAL_SPACEGROUPS:
index = queue_model_enumerables.XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self._vertical_dimension_widget.space_group_ledit.\
setCurrentIndex(index)
def init_models(self):
"""
Descript. :
"""
CreateTaskBase.init_models(self)
self._init_models()
def _init_models(self):
"""
Descript. :
"""
self._char = queue_model_objects.Characterisation()
self._char_params = self._char.characterisation_parameters
self._processing_parameters = queue_model_objects.ProcessingParameters()
self._set_space_group(self._processing_parameters.space_group)
if self._beamline_setup_hwobj is not None:
self._acquisition_parameters = self._beamline_setup_hwobj.\
get_default_char_acq_parameters()
self._char_params = self._beamline_setup_hwobj.\
get_default_characterisation_parameters()
else:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters()
self._path_template.reference_image_prefix = 'ref'
# The num images drop down default value is 1
# we would like it to be 2
self._acquisition_parameters.num_images = 2
self._char.characterisation_software =\
queue_model_enumerables.COLLECTION_ORIGIN.EDNA
self._path_template.num_files = 2
self._path_template.compression = False
self._acquisition_parameters.shutterless = False
def single_item_selection(self, tree_item):
"""
Descript. :
"""
CreateTaskBase.single_item_selection(self, tree_item)
if isinstance(tree_item, Qt4_queue_item.SampleQueueItem):
#self._init_models()
if self._char_params.space_group == "":
sample_model = tree_item.get_model()
self._set_space_group(sample_model.processing_parameters.space_group)
#self._acq_widget.update_data_model(self._acquisition_parameters,
# self._path_template)
#self._char_params_mib.set_model(self._char_params)
elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem):
self.setDisabled(False)
elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem):
if tree_item.get_model().is_executed():
self.setDisabled(True)
else:
self.setDisabled(False)
self._char = tree_item.get_model()
if self._char.get_path_template():
self._path_template = self._char.get_path_template()
self._data_path_widget.update_data_model(self._path_template)
data_collection = self._char.reference_image_collection
self._char_params = self._char.characterisation_parameters
self._char_params_mib.set_model(self._char_params)
self._acquisition_parameters = data_collection.acquisitions[0].\
acquisition_parameters
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
#self.get_acquisition_widget().use_osc_start(True)
if len(data_collection.acquisitions) == 1:
self.select_shape_with_cpos(self._acquisition_parameters.\
centred_position)
self._processing_parameters = data_collection.processing_parameters
else:
self.setDisabled(True)
def update_processing_parameters(self, crystal):
"""
Descript. :
"""
self._processing_parameters.space_group = crystal.space_group
self._char_params.space_group = crystal.space_group
self._processing_parameters.cell_a = crystal.cell_a
self._processing_parameters.cell_alpha = crystal.cell_alpha
self._processing_parameters.cell_b = crystal.cell_b
self._processing_parameters.cell_beta = crystal.cell_beta
self._processing_parameters.cell_c = crystal.cell_c
self._processing_parameters.cell_gamma = crystal.cell_gamma
def approve_creation(self):
"""
Descript. :
"""
result = CreateTaskBase.approve_creation(self)
selected_shapes = self._graphics_manager_hwobj.get_selected_shapes()
for shape in selected_shapes:
if isinstance(shape, GraphicsItemPoint):
result = True
return result
# Called by the owning widget (task_toolbox_widget) to create
# a collection. when a data collection group is selected.
def _create_task(self, sample, shape):
"""
Descript. :
"""
tasks = []
if not shape or not isinstance(shape, GraphicsItemPoint):
cpos = queue_model_objects.CentredPosition()
cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot()
else:
# Shapes selected and sample is mounted, get the
# centred positions for the shapes
snapshot = self._graphics_manager_hwobj.\
get_scene_snapshot(shape)
cpos = copy.deepcopy(shape.get_centred_position())
cpos.snapshot_image = snapshot
char_params = copy.deepcopy(self._char_params)
acq = self._create_acq(sample)
dc = queue_model_objects.\
DataCollection([acq], sample.crystals[0],
self._processing_parameters)
# Reference images for characterisations should be taken 90 deg apart
# this is achived by setting overap to -89
acq.acquisition_parameters.overlap = -89
acq.acquisition_parameters.centred_position = cpos
dc.acquisitions[0] = acq
dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF
dc.run_processing_parallel = False
char = queue_model_objects.Characterisation(dc,
char_params)
char.set_name(dc.acquisitions[0].\
path_template.get_prefix())
char.set_number(dc.acquisitions[0].\
path_template.run_number)
char.run_characterisation = self._char_widget.characterisation_gbox.isChecked()
char.wait_result = self._char_widget.wait_result_cbx.isChecked()
char.run_diffraction_plan = self._char_widget.execute_plan_cbx.isChecked()
char.diff_plan_compression = self._tree_brick.compression_state
tasks.append(char)
self._path_template.run_number += 1
return tasks
def characterisation_gbox_toggled(self, state):
if self._char:
self._char.run_characterisation = state
def wait_results_cbx_toggled(self, state):
if self._char:
self._char.wait_result = state
def run_diffraction_plan_cbx_toggled(self, state):
if self._char:
self._char.run_diffraction_plan = state
def __init__(self,parent = None,name = None, fl = 0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_widget = DataPathWidget(self,
data_model = self._path_template, layout = 'vertical')
self._vertical_dimension_widget = loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
# Layout --------------------------------------------------------------
_main_vlayout = QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(2, 2, 2, 2)
_main_vlayout.setSpacing(6)
_main_vlayout.addStretch(0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.\
connect(self.path_template_changed)
self._acq_widget.acqParametersChangedSignal.\
connect(self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
#self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
self._char_widget.characterisation_gbox.toggled.connect(\
self.characterisation_gbox_toggled)
self._char_widget.wait_result_cbx.toggled.connect(\
self.wait_results_cbx_toggled)
self._char_widget.execute_plan_cbx.toggled.connect(\
self.run_diffraction_plan_cbx_toggled)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx,
bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx,
bool, None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox,
int, None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(
queue_model_enumerables.XTAL_SPACEGROUPS
)
self._data_path_widget.data_path_layout.compression_cbox.setVisible(False)
class CreateCharWidget(CreateTaskBase):
"""
Descript. :
"""
def __init__(self, parent=None, name=None, fl=0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_widget = DataPathWidget(self,
data_model=self._path_template,
layout='vertical')
self._vertical_dimension_widget = loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
# Layout --------------------------------------------------------------
_main_vlayout = QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(2, 2, 2, 2)
_main_vlayout.setSpacing(6)
_main_vlayout.addStretch(0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.\
connect(self.path_template_changed)
self._acq_widget.acqParametersChangedSignal.\
connect(self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
#self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
self._char_widget.characterisation_gbox.toggled.connect(\
self.characterisation_gbox_toggled)
self._char_widget.wait_result_cbx.toggled.connect(\
self.wait_results_cbx_toggled)
self._char_widget.execute_plan_cbx.toggled.connect(\
self.run_diffraction_plan_cbx_toggled)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool,
None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox, int,
None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(
XTAL_SPACEGROUPS)
def enable_compression(self, state):
CreateTaskBase.enable_compression(self, False)
def use_induced_burn(self, state):
"""
Descript. :
"""
self._acquisition_parameters.induce_burn = state
def _space_group_change(self, index):
"""
Descript. :
"""
self._char_params.space_group = queue_model_enumerables.\
XTAL_SPACEGROUPS[index]
def _set_space_group(self, space_group):
"""
Descript. :
"""
index = 0
if self._vertical_dimension_widget:
if space_group in XTAL_SPACEGROUPS:
index = XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self._vertical_dimension_widget.space_group_ledit.\
setCurrentIndex(index)
def init_models(self):
"""
Descript. :
"""
CreateTaskBase.init_models(self)
self._init_models()
def _init_models(self):
"""
Descript. :
"""
self._char = queue_model_objects.Characterisation()
self._char_params = self._char.characterisation_parameters
self._processing_parameters = queue_model_objects.ProcessingParameters(
)
self._set_space_group(self._processing_parameters.space_group)
if self._beamline_setup_hwobj is not None:
self._acquisition_parameters = self._beamline_setup_hwobj.\
get_default_char_acq_parameters()
self._char_params = self._beamline_setup_hwobj.\
get_default_characterisation_parameters()
else:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters(
)
self._path_template.reference_image_prefix = 'ref'
# The num images drop down default value is 1
# we would like it to be 2
self._acquisition_parameters.num_images = 2
self._char.characterisation_software =\
queue_model_enumerables.COLLECTION_ORIGIN.EDNA
self._path_template.num_files = 2
self._path_template.compression = False
self._acquisition_parameters.shutterless = False
def single_item_selection(self, tree_item):
"""
Descript. :
"""
CreateTaskBase.single_item_selection(self, tree_item)
if isinstance(tree_item, Qt4_queue_item.SampleQueueItem):
#self._init_models()
if self._char_params.space_group == "":
sample_model = tree_item.get_model()
self._set_space_group(
sample_model.processing_parameters.space_group)
#self._acq_widget.update_data_model(self._acquisition_parameters,
# self._path_template)
#self._char_params_mib.set_model(self._char_params)
elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem):
self.setDisabled(False)
elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem):
if tree_item.get_model().is_executed():
self.setDisabled(True)
else:
self.setDisabled(False)
self._char = tree_item.get_model()
if self._char.get_path_template():
self._path_template = self._char.get_path_template()
self._data_path_widget.update_data_model(self._path_template)
data_collection = self._char.reference_image_collection
self._char_params = self._char.characterisation_parameters
self._char_params_mib.set_model(self._char_params)
self._acquisition_parameters = data_collection.acquisitions[0].\
acquisition_parameters
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
#self.get_acquisition_widget().use_osc_start(True)
if len(data_collection.acquisitions) == 1:
self.select_shape_with_cpos(self._acquisition_parameters.\
centred_position)
self._processing_parameters = data_collection.processing_parameters
else:
self.setDisabled(True)
def update_processing_parameters(self, crystal):
"""
Descript. :
"""
self._processing_parameters.space_group = crystal.space_group
self._char_params.space_group = crystal.space_group
self._processing_parameters.cell_a = crystal.cell_a
self._processing_parameters.cell_alpha = crystal.cell_alpha
self._processing_parameters.cell_b = crystal.cell_b
self._processing_parameters.cell_beta = crystal.cell_beta
self._processing_parameters.cell_c = crystal.cell_c
self._processing_parameters.cell_gamma = crystal.cell_gamma
def approve_creation(self):
"""
Descript. :
"""
result = CreateTaskBase.approve_creation(self)
selected_shapes = self._graphics_manager_hwobj.get_selected_shapes()
for shape in selected_shapes:
if isinstance(shape, GraphicsItemPoint):
result = True
return result
# Called by the owning widget (task_toolbox_widget) to create
# a collection. when a data collection group is selected.
def _create_task(self, sample, shape):
"""
Descript. :
"""
tasks = []
if not shape or not isinstance(shape, GraphicsItemPoint):
cpos = queue_model_objects.CentredPosition()
cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot(
)
else:
# Shapes selected and sample is mounted, get the
# centred positions for the shapes
snapshot = self._graphics_manager_hwobj.\
get_scene_snapshot(shape)
cpos = copy.deepcopy(shape.get_centred_position())
cpos.snapshot_image = snapshot
char_params = copy.deepcopy(self._char_params)
acq = self._create_acq(sample)
dc = queue_model_objects.\
DataCollection([acq], sample.crystals[0],
self._processing_parameters)
# Reference images for characterisations should be taken 90 deg apart
# this is achived by setting overap to -89
acq.acquisition_parameters.overlap = -89
acq.acquisition_parameters.centred_position = cpos
dc.acquisitions[0] = acq
dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF
dc.run_processing_parallel = False
char = queue_model_objects.Characterisation(dc, char_params)
char.set_name(dc.acquisitions[0].\
path_template.get_prefix())
char.set_number(dc.acquisitions[0].\
path_template.run_number)
char.run_characterisation = self._char_widget.characterisation_gbox.isChecked(
)
char.wait_result = self._char_widget.wait_result_cbx.isChecked()
char.run_diffraction_plan = self._char_widget.execute_plan_cbx.isChecked(
)
tasks.append(char)
self._path_template.run_number += 1
return tasks
def characterisation_gbox_toggled(self, state):
if self._char:
self._char.run_characterisation = state
def wait_results_cbx_toggled(self, state):
if self._char:
self._char.wait_result = state
def run_diffraction_plan_cbx_toggled(self, state):
if self._char:
self._char.run_diffraction_plan = state
def __init__(self, parent=None, name=None, fl=0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_widget = DataPathWidget(self,
data_model=self._path_template,
layout='vertical')
self._vertical_dimension_widget = loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
# Layout --------------------------------------------------------------
_main_vlayout = QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(2, 2, 2, 2)
_main_vlayout.setSpacing(6)
_main_vlayout.addStretch(0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.\
connect(self.path_template_changed)
self._acq_widget.acqParametersChangedSignal.\
connect(self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
#self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
self._char_widget.characterisation_gbox.toggled.connect(\
self.characterisation_gbox_toggled)
self._char_widget.wait_result_cbx.toggled.connect(\
self.wait_results_cbx_toggled)
self._char_widget.execute_plan_cbx.toggled.connect(\
self.run_diffraction_plan_cbx_toggled)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool,
None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox, int,
None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(
XTAL_SPACEGROUPS)
def __init__(self, parent=None, name=None, fl=0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, "Characterisation")
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = AcquisitionWidgetSimple(
self, acq_params=self._acquisition_parameters, path_template=self._path_template
)
self._data_path_widget = DataPathWidget(self, data_model=self._path_template, layout="vertical")
self._vertical_dimension_widget = uic.loadUi(
os.path.join(os.path.dirname(__file__), "ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui")
)
self._char_widget = uic.loadUi(
os.path.join(os.path.dirname(__file__), "ui_files/Qt4_characterise_simple_widget_vertical_layout.ui")
)
# Layout --------------------------------------------------------------
_main_vlayout = QtGui.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(0, 0, 0, 0)
_main_vlayout.setSpacing(2)
_main_vlayout.addStretch(10)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.connect(self.acq_parameters_changed)
self._acq_widget.acqParametersChangedSignal.connect(self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.connect(self._space_group_change)
# self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
self._char_widget.characterisation_gbox.toggled.connect(self.characterisation_gbox_toggled)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update("opt_sad", self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update("account_rad_damage", self._char_widget.account_rad_dmg_cbx, bool, None)
# self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update("strategy_complexity", self._char_widget.start_comp_cbox, int, None)
self._char_params_mib.bind_value_update(
"max_crystal_vdim",
self._vertical_dimension_widget.max_vdim_ledit,
float,
QtGui.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vdim",
self._vertical_dimension_widget.min_vdim_ledit,
float,
QtGui.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vphi",
self._vertical_dimension_widget.min_vphi_ledit,
float,
QtGui.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vphi",
self._vertical_dimension_widget.max_vphi_ledit,
float,
QtGui.QDoubleValidator(0.0, 1000, 2, self),
)
self._vertical_dimension_widget.space_group_ledit.addItems(XTAL_SPACEGROUPS)
def __init__(self, parent=None, name=None, fl=0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
if not name:
self.setName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_gbox = QtGui.QGroupBox('Data location', self)
self._data_path_widget = DataPathWidget(self._data_path_gbox,
data_model=self._path_template,
layout='vertical')
self._vertical_dimension_widget = uic.loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = uic.loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
gbox = self._char_widget.findChild(QtGui.QGroupBox,
"characterisation_gbox")
p = gbox.palette()
p.setColor(QtGui.QPalette.Window, QtCore.Qt.red)
p.setColor(QtGui.QPalette.Highlight, QtCore.Qt.red)
gbox.setPalette(p)
# Layout --------------------------------------------------------------
_data_path_gbox_layout = QtGui.QVBoxLayout(self)
_data_path_gbox_layout.addWidget(self._data_path_widget)
_data_path_gbox_layout.setSpacing(0)
_data_path_gbox_layout.setContentsMargins(0, 0, 0, 0)
self._data_path_gbox.setLayout(_data_path_gbox_layout)
_main_vlayout = QtGui.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_gbox)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setSpacing(0)
_main_vlayout.setContentsMargins(0, 0, 0, 0)
self.setLayout(_main_vlayout)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool,
None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox, int,
None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(
XTAL_SPACEGROUPS)
self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\
connect(self._prefix_ledit_change)
self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\
connect(self._run_number_ledit_change)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
self.connect(self._data_path_widget,
QtCore.SIGNAL("pathTemplateChanged"),
self.handle_path_conflict)
class CreateCharWidget(CreateTaskBase):
"""
Descript. :
"""
def __init__(self, parent=None, name=None, fl=0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
if not name:
self.setName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_gbox = QtGui.QGroupBox('Data location', self)
self._data_path_widget = DataPathWidget(self._data_path_gbox,
data_model=self._path_template,
layout='vertical')
self._vertical_dimension_widget = uic.loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = uic.loadUi(
os.path.join(
os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
gbox = self._char_widget.findChild(QtGui.QGroupBox,
"characterisation_gbox")
p = gbox.palette()
p.setColor(QtGui.QPalette.Window, QtCore.Qt.red)
p.setColor(QtGui.QPalette.Highlight, QtCore.Qt.red)
gbox.setPalette(p)
# Layout --------------------------------------------------------------
_data_path_gbox_layout = QtGui.QVBoxLayout(self)
_data_path_gbox_layout.addWidget(self._data_path_widget)
_data_path_gbox_layout.setSpacing(0)
_data_path_gbox_layout.setContentsMargins(0, 0, 0, 0)
self._data_path_gbox.setLayout(_data_path_gbox_layout)
_main_vlayout = QtGui.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_gbox)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setSpacing(0)
_main_vlayout.setContentsMargins(0, 0, 0, 0)
self.setLayout(_main_vlayout)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool,
None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox, int,
None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(
XTAL_SPACEGROUPS)
self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\
connect(self._prefix_ledit_change)
self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\
connect(self._run_number_ledit_change)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
self.connect(self._data_path_widget,
QtCore.SIGNAL("pathTemplateChanged"),
self.handle_path_conflict)
#self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
def use_induced_burn(self, state):
"""
Descript. :
"""
self._acquisition_parameters.induce_burn = state
def _space_group_change(self, index):
"""
Descript. :
"""
self._char_params.space_group = queue_model_enumerables.\
XTAL_SPACEGROUPS[index]
def _set_space_group(self, space_group):
"""
Descript. :
"""
index = 0
if space_group in XTAL_SPACEGROUPS:
index = XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self._vertical_dimension_widget.space_group_ledit.setCurrentIndex(
index)
def init_models(self):
"""
Descript. :
"""
CreateTaskBase.init_models(self)
self._init_models()
def _init_models(self):
"""
Descript. :
"""
self._char = queue_model_objects.Characterisation()
self._char_params = self._char.characterisation_parameters
self._processing_parameters = queue_model_objects.ProcessingParameters(
)
if self._beamline_setup_hwobj is not None:
self._acquisition_parameters = self._beamline_setup_hwobj.\
get_default_char_acq_parameters()
self._char_params = self._beamline_setup_hwobj.\
get_default_characterisation_parameters()
try:
transmission = self._beamline_setup_hwobj.transmission_hwobj.getAttFactor(
)
transmission = round(float(transmission), 1)
except AttributeError:
transmission = 0
try:
resolution = self._beamline_setup_hwobj.resolution_hwobj.getPosition(
)
resolution = round(float(resolution), 3)
except AttributeError:
resolution = 0
try:
energy = self._beamline_setup_hwobj.energy_hwobj.getCurrentEnergy(
)
energy = round(float(energy), 4)
except AttributeError:
energy = 0
self._acquisition_parameters.resolution = resolution
self._acquisition_parameters.energy = energy
self._acquisition_parameters.transmission = transmission
else:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters(
)
return
self._path_template.reference_image_prefix = 'ref'
# The num images drop down default value is 1
# we would like it to be 2
self._acquisition_parameters.num_images = 2
self._char.characterisation_software =\
queue_model_enumerables.COLLECTION_ORIGIN.EDNA
self._path_template.num_files = 2
self._acquisition_parameters.shutterless = False
def single_item_selection(self, tree_item):
"""
Descript. :
"""
CreateTaskBase.single_item_selection(self, tree_item)
if isinstance(tree_item, Qt4_queue_item.SampleQueueItem):
self._init_models()
self._set_space_group(self._char_params.space_group)
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
self._char_params_mib.set_model(self._char_params)
#self._char_params = copy.deepcopy(self._char_params)
#self._acquisition_parameters = copy.deepcopy(self._acquisition_parameters)
elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem):
if tree_item.get_model().is_executed():
self.setDisabled(True)
else:
self.setDisabled(False)
self._char = tree_item.get_model()
if self._char.get_path_template():
self._path_template = self._char.get_path_template()
self._data_path_widget.update_data_model(self._path_template)
data_collection = self._char.reference_image_collection
self._char_params = self._char.characterisation_parameters
self._char_params_mib.set_model(self._char_params)
self._acquisition_parameters = data_collection.acquisitions[0].\
acquisition_parameters
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
self.get_acquisition_widget().use_osc_start(True)
if len(data_collection.acquisitions) == 1:
self.select_shape_with_cpos(self._acquisition_parameters.\
centred_position)
self._processing_parameters = data_collection.processing_parameters
else:
self.setDisabled(True)
def update_processing_parameters(self, crystal):
"""
Descript. :
"""
self._processing_parameters.space_group = crystal.space_group
self._char_params.space_group = crystal.space_group
self._processing_parameters.cell_a = crystal.cell_a
self._processing_parameters.cell_alpha = crystal.cell_alpha
self._processing_parameters.cell_b = crystal.cell_b
self._processing_parameters.cell_beta = crystal.cell_beta
self._processing_parameters.cell_c = crystal.cell_c
self._processing_parameters.cell_gamma = crystal.cell_gamma
def approve_creation(self):
"""
Descript. :
"""
result = CreateTaskBase.approve_creation(self)
selected_shapes = self._graphics_manager_hwobj.get_selected_shapes()
for shape in selected_shapes:
if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint):
result = True
return result
# Called by the owning widget (task_toolbox_widget) to create
# a collection. when a data collection group is selected.
def _create_task(self, sample, shape):
"""
Descript. :
"""
tasks = []
if not shape:
cpos = queue_model_objects.CentredPosition()
cpos.snapshot_image = self._graphics_manager_hwobj.get_snapshot()
else:
# Shapes selected and sample is mounted, get the
# centred positions for the shapes
if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint):
snapshot = self._graphics_manager_hwobj.\
get_snapshot([shape])
cpos = copy.deepcopy(shape.get_centred_positions()[0])
cpos.snapshot_image = snapshot
char_params = copy.deepcopy(self._char_params)
acq = self._create_acq(sample)
dc = queue_model_objects.\
DataCollection([acq], sample.crystals[0],
self._processing_parameters)
# Reference images for characterisations should be taken 90 deg apart
# this is achived by setting overap to -89
acq.acquisition_parameters.overlap = -89
acq.acquisition_parameters.centred_position = cpos
dc.acquisitions[0] = acq
dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF
char = queue_model_objects.Characterisation(dc, char_params)
char.set_name(dc.acquisitions[0].\
path_template.get_prefix())
char.set_number(dc.acquisitions[0].\
path_template.run_number)
tasks.append(char)
self._path_template.run_number += 1
return tasks
def __init__(self,parent = None,name = None, fl = 0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
if not name:
self.setName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_gbox = QtGui.QGroupBox('Data location', self)
self._data_path_widget = DataPathWidget(
self._data_path_gbox,
data_model = self._path_template,
layout = 'vertical')
self._vertical_dimension_widget = uic.loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = uic.loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
gbox = self._char_widget.findChild(QtGui.QGroupBox, "characterisation_gbox")
p = gbox.palette();
p.setColor(QtGui.QPalette.Window, QtCore.Qt.red);
p.setColor(QtGui.QPalette.Highlight, QtCore.Qt.red);
gbox.setPalette(p);
# Layout --------------------------------------------------------------
_data_path_gbox_layout = QtGui.QVBoxLayout(self)
_data_path_gbox_layout.addWidget(self._data_path_widget)
_data_path_gbox_layout.setSpacing(0)
_data_path_gbox_layout.setContentsMargins(0,0,0,0)
self._data_path_gbox.setLayout(_data_path_gbox_layout)
_main_vlayout = QtGui.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_gbox)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setSpacing(0)
_main_vlayout.setContentsMargins(0,0,0,0)
self.setLayout(_main_vlayout)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx,
bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx,
bool, None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox,
int, None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(XTAL_SPACEGROUPS)
self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\
connect(self._prefix_ledit_change)
self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\
connect(self._run_number_ledit_change)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
self.connect(self._data_path_widget,
QtCore.SIGNAL("pathTemplateChanged"),
self.handle_path_conflict)
class CreateCharWidget(CreateTaskBase):
"""
Descript. :
"""
def __init__(self,parent = None,name = None, fl = 0):
"""
Descript. :
"""
CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation')
if not name:
self.setName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._current_selected_item = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = \
AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters,
path_template = self._path_template)
self._data_path_gbox = QtGui.QGroupBox('Data location', self)
self._data_path_widget = DataPathWidget(
self._data_path_gbox,
data_model = self._path_template,
layout = 'vertical')
self._vertical_dimension_widget = uic.loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui'))
self._char_widget = uic.loadUi(os.path.join(os.path.dirname(__file__),
'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui'))
gbox = self._char_widget.findChild(QtGui.QGroupBox, "characterisation_gbox")
p = gbox.palette();
p.setColor(QtGui.QPalette.Window, QtCore.Qt.red);
p.setColor(QtGui.QPalette.Highlight, QtCore.Qt.red);
gbox.setPalette(p);
# Layout --------------------------------------------------------------
_data_path_gbox_layout = QtGui.QVBoxLayout(self)
_data_path_gbox_layout.addWidget(self._data_path_widget)
_data_path_gbox_layout.setSpacing(0)
_data_path_gbox_layout.setContentsMargins(0,0,0,0)
self._data_path_gbox.setLayout(_data_path_gbox_layout)
_main_vlayout = QtGui.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_gbox)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setSpacing(0)
_main_vlayout.setContentsMargins(0,0,0,0)
self.setLayout(_main_vlayout)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
'opt_sad', self._char_widget.optimised_sad_cbx,
bool, None)
self._char_params_mib.bind_value_update(
'account_rad_damage', self._char_widget.account_rad_dmg_cbx,
bool, None)
#self._char_params_mib.bind_value_update('determine_rad_params',
# induced_burn_cbx,
# bool, None)
self._char_params_mib.bind_value_update(
'strategy_complexity', self._char_widget.start_comp_cbox,
int, None)
self._char_params_mib.\
bind_value_update('max_crystal_vdim',
self._vertical_dimension_widget.max_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vdim',
self._vertical_dimension_widget.min_vdim_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('min_crystal_vphi',
self._vertical_dimension_widget.min_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._char_params_mib.\
bind_value_update('max_crystal_vphi',
self._vertical_dimension_widget.max_vphi_ledit, float,
QtGui.QDoubleValidator(0.0, 1000, 2, self))
self._vertical_dimension_widget.space_group_ledit.addItems(XTAL_SPACEGROUPS)
self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\
connect(self._prefix_ledit_change)
self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\
connect(self._run_number_ledit_change)
self._vertical_dimension_widget.space_group_ledit.activated.\
connect(self._space_group_change)
self.connect(self._data_path_widget,
QtCore.SIGNAL("pathTemplateChanged"),
self.handle_path_conflict)
#self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"),
# self.use_induced_burn)
def use_induced_burn(self, state):
"""
Descript. :
"""
self._acquisition_parameters.induce_burn = state
def _space_group_change(self, index):
"""
Descript. :
"""
self._char_params.space_group = queue_model_enumerables.\
XTAL_SPACEGROUPS[index]
def _set_space_group(self, space_group):
"""
Descript. :
"""
index = 0
if space_group in XTAL_SPACEGROUPS:
index = XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self._vertical_dimension_widget.space_group_ledit.setCurrentIndex(index)
def init_models(self):
"""
Descript. :
"""
CreateTaskBase.init_models(self)
self._init_models()
def _init_models(self):
"""
Descript. :
"""
self._char = queue_model_objects.Characterisation()
self._char_params = self._char.characterisation_parameters
self._processing_parameters = queue_model_objects.ProcessingParameters()
if self._beamline_setup_hwobj is not None:
self._acquisition_parameters = self._beamline_setup_hwobj.\
get_default_char_acq_parameters()
self._char_params = self._beamline_setup_hwobj.\
get_default_characterisation_parameters()
try:
transmission = self._beamline_setup_hwobj.transmission_hwobj.getAttFactor()
transmission = round(float(transmission), 1)
except AttributeError:
transmission = 0
try:
resolution = self._beamline_setup_hwobj.resolution_hwobj.getPosition()
resolution = round(float(resolution), 3)
except AttributeError:
resolution = 0
try:
energy = self._beamline_setup_hwobj.energy_hwobj.getCurrentEnergy()
energy = round(float(energy), 4)
except AttributeError:
energy = 0
self._acquisition_parameters.resolution = resolution
self._acquisition_parameters.energy = energy
self._acquisition_parameters.transmission = transmission
else:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters()
return
self._path_template.reference_image_prefix = 'ref'
# The num images drop down default value is 1
# we would like it to be 2
self._acquisition_parameters.num_images = 2
self._char.characterisation_software =\
queue_model_enumerables.COLLECTION_ORIGIN.EDNA
self._path_template.num_files = 2
self._acquisition_parameters.shutterless = False
def single_item_selection(self, tree_item):
"""
Descript. :
"""
CreateTaskBase.single_item_selection(self, tree_item)
if isinstance(tree_item, Qt4_queue_item.SampleQueueItem):
self._init_models()
self._set_space_group(self._char_params.space_group)
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
self._char_params_mib.set_model(self._char_params)
#self._char_params = copy.deepcopy(self._char_params)
#self._acquisition_parameters = copy.deepcopy(self._acquisition_parameters)
elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem):
if tree_item.get_model().is_executed():
self.setDisabled(True)
else:
self.setDisabled(False)
self._char = tree_item.get_model()
if self._char.get_path_template():
self._path_template = self._char.get_path_template()
self._data_path_widget.update_data_model(self._path_template)
data_collection = self._char.reference_image_collection
self._char_params = self._char.characterisation_parameters
self._char_params_mib.set_model(self._char_params)
self._acquisition_parameters = data_collection.acquisitions[0].\
acquisition_parameters
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
self.get_acquisition_widget().use_osc_start(True)
if len(data_collection.acquisitions) == 1:
self.select_shape_with_cpos(self._acquisition_parameters.\
centred_position)
self._processing_parameters = data_collection.processing_parameters
else:
self.setDisabled(True)
def update_processing_parameters(self, crystal):
"""
Descript. :
"""
self._processing_parameters.space_group = crystal.space_group
self._char_params.space_group = crystal.space_group
self._processing_parameters.cell_a = crystal.cell_a
self._processing_parameters.cell_alpha = crystal.cell_alpha
self._processing_parameters.cell_b = crystal.cell_b
self._processing_parameters.cell_beta = crystal.cell_beta
self._processing_parameters.cell_c = crystal.cell_c
self._processing_parameters.cell_gamma = crystal.cell_gamma
def approve_creation(self):
"""
Descript. :
"""
result = CreateTaskBase.approve_creation(self)
selected_shapes = self._graphics_manager_hwobj.get_selected_shapes()
for shape in selected_shapes:
if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint):
result = True
return result
# Called by the owning widget (task_toolbox_widget) to create
# a collection. when a data collection group is selected.
def _create_task(self, sample, shape):
"""
Descript. :
"""
tasks = []
if not shape:
cpos = queue_model_objects.CentredPosition()
cpos.snapshot_image = self._graphics_manager_hwobj.get_snapshot()
else:
# Shapes selected and sample is mounted, get the
# centred positions for the shapes
if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint):
snapshot = self._graphics_manager_hwobj.\
get_snapshot([shape])
cpos = copy.deepcopy(shape.get_centred_positions()[0])
cpos.snapshot_image = snapshot
char_params = copy.deepcopy(self._char_params)
acq = self._create_acq(sample)
dc = queue_model_objects.\
DataCollection([acq], sample.crystals[0],
self._processing_parameters)
# Reference images for characterisations should be taken 90 deg apart
# this is achived by setting overap to -89
acq.acquisition_parameters.overlap = -89
acq.acquisition_parameters.centred_position = cpos
dc.acquisitions[0] = acq
dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF
char = queue_model_objects.Characterisation(dc,
char_params)
char.set_name(dc.acquisitions[0].\
path_template.get_prefix())
char.set_number(dc.acquisitions[0].\
path_template.run_number)
tasks.append(char)
self._path_template.run_number += 1
return tasks
