Exemple #1
0
    def make_READnome(self, fq_id, run_ID, buff=500, out_path=None):

        if out_path != None:
            fout_name = os.path.split(fq_id)[-1]
            fout = os.path.join(out_path, fout_name)
        else:
            fout = os.path.split(fq_id)[-1]

        asm = "{}.asm.out".format(fout)
        fa = "{}.asm.fa".format(fout)

        G = GenerateRADnome()
        G.make_READnome(asm, fa, buff, run_ID, out_path)
        return 1