def subset_image_baseimage(output_file,input_file,baseimage,same_res=False):
"""
subset a image base on the extent of another image
Args:
output_file:the result file
input_file:the image need to subset
baseimage:the base image which provide the extend for subset
same_res: if true, then will resample the output to the resolution of baseimage, otherwise, keep the resolution
Returns:True is successful, False otherwise
"""
(ulx,uly,lrx,lry) = RSImage.get_image_proj_extent(baseimage)
if ulx is False:
return False
# check the save folder is valid or not
save_dir = os.path.dirname(output_file)
if len(save_dir) < 1:
basic.outputlogMessage('output save to current folder')
else:
basic.outputlogMessage('result save to %s'%save_dir)
img_obj = RSImageclass()
if same_res:
img_obj.open(baseimage)
else:
img_obj.open(input_file) # the resolution should keep the same
xres = img_obj.GetXresolution()
yres = img_obj.GetYresolution()
img_obj=None
if subset_image_projwin(output_file,input_file,ulx,uly,lrx,lry,xres=xres,yres=yres) is False:
return False
return True
def subset_image_by_shapefile(imagefile, shapefile, bkeepmidfile):
"""
subset an image by polygons contained in the shapefile
Args:
imagefile:input image file path
shapefile:input shapefile contains polygon
bkeepmidfile:indicate whether keep middle file
Returns:output file name if succussful, False Otherwise
"""
if io_function.is_file_exist(imagefile) is False:
return False
if io_function.is_file_exist(shapefile) is False:
return False
Outfilename = io_function.get_name_by_adding_tail(imagefile, 'vsub')
# ds = ogr.Open(shapefile)
# lyr = ds.GetLayer(0)
# lyr.ResetReading()
# ft = lyr.GetNextFeature()
# subprocess.call(['gdalwarp', imagefile, Outfilename, '-cutline', shapefile,\
# '-crop_to_cutline'])
orgimg_obj = RSImageclass()
if orgimg_obj.open(imagefile) is False:
return False
x_res = abs(orgimg_obj.GetXresolution())
y_res = abs(orgimg_obj.GetYresolution())
CommandString = 'gdalwarp ' + ' -tr ' + str(x_res) + ' ' + str(
y_res
) + ' ' + imagefile + ' ' + Outfilename + ' -cutline ' + shapefile + ' -crop_to_cutline ' + ' -overwrite '
if basic.exec_command_string_one_file(CommandString, Outfilename) is False:
return False
# while ft:
# country_name = ft.GetFieldAsString('admin')
# outraster = imagefile.replace('.tif', '_%s.tif' % country_name.replace(' ', '_'))
# subprocess.call(['gdalwarp', imagefile, Outfilename, '-cutline', shapefile,
# '-crop_to_cutline', '-cwhere', "'admin'='%s'" % country_name])
#
# ft = lyr.GetNextFeature()
if not bkeepmidfile:
io_function.delete_file_or_dir(imagefile)
os.remove(imagefile)
if io_function.is_file_exist(Outfilename):
return Outfilename
else:
# basic.outputlogMessage(result)
basic.outputlogMessage(
'The version of GDAL must be great than 2.0 in order to use the r option '
)
return False
def subset_image_by_shapefile(imagefile,
shapefile,
bkeepmidfile=True,
overwrite=False,
format='GTiff',
save_path=None,
resample_m='bilinear',
src_nodata=None,
dst_nondata=None,
xres=None,
yres=None,
compress=None,
tiled=None,
bigtiff=None,
thread_num=None):
"""
subset an image by polygons contained in the shapefile
the shapefile and imagefile may have different projections, the gdalwarp can handle
Args:
imagefile:input image file path
shapefile:input shapefile contains polygon
bkeepmidfile:indicate whether keep middle file
format: output format, default is GTiff, GeoTIFF File Format. Use "VRT": GDAL Virtual Format to save disk storage
Returns:output file name if succussful, False Otherwise
"""
if io_function.is_file_exist(imagefile) is False:
return False
if io_function.is_file_exist(shapefile) is False:
return False
if save_path is None:
Outfilename = io_function.get_name_by_adding_tail(imagefile, 'vsub')
else:
Outfilename = save_path
# ds = ogr.Open(shapefile)
# lyr = ds.GetLayer(0)
# lyr.ResetReading()
# ft = lyr.GetNextFeature()
# subprocess.call(['gdalwarp', imagefile, Outfilename, '-cutline', shapefile,\
# '-crop_to_cutline'])
if overwrite is False and os.path.isfile(Outfilename):
basic.outputlogMessage('warning, crop file: %s already exist, skip' %
Outfilename)
return Outfilename
orgimg_obj = RSImageclass()
if orgimg_obj.open(imagefile) is False:
return False
if xres is None or yres is None:
x_res = abs(orgimg_obj.GetXresolution())
y_res = abs(orgimg_obj.GetYresolution())
else:
x_res = xres
y_res = yres
CommandString = 'gdalwarp -r %s '% resample_m+' -tr ' + str(x_res) + ' '+ str(y_res)+ ' -of ' + format + ' ' + \
imagefile +' ' + Outfilename +' -cutline ' +shapefile +' -crop_to_cutline ' + ' -overwrite '
if src_nodata != None:
CommandString += ' -srcnodata %d ' % src_nodata
if dst_nondata != None:
CommandString += ' -dstnodata %d ' % dst_nondata
if compress != None:
CommandString += ' -co ' + 'compress=%s' % compress # lzw
if tiled != None:
CommandString += ' -co ' + 'TILED=%s' % tiled # yes
if bigtiff != None:
CommandString += ' -co ' + 'bigtiff=%s' % bigtiff # IF_SAFER
if thread_num != None:
CommandString += ' -multi -wo NUM_THREADS=%d ' % thread_num
if basic.exec_command_string_one_file(CommandString, Outfilename) is False:
return False
# while ft:
# country_name = ft.GetFieldAsString('admin')
# outraster = imagefile.replace('.tif', '_%s.tif' % country_name.replace(' ', '_'))
# subprocess.call(['gdalwarp', imagefile, Outfilename, '-cutline', shapefile,
# '-crop_to_cutline', '-cwhere', "'admin'='%s'" % country_name])
#
# ft = lyr.GetNextFeature()
if not bkeepmidfile:
io_function.delete_file_or_dir(imagefile)
os.remove(imagefile)
if io_function.is_file_exist(Outfilename):
return Outfilename
else:
# basic.outputlogMessage(result)
basic.outputlogMessage(
'The version of GDAL must be great than 2.0 in order to use the r option '
)
return False
def coregistration_siftGPU(basefile, warpfile, bkeepmidfile, xml_obj):
tiepointfile = '0_1_after.pts'
if os.path.isfile(tiepointfile):
basic.outputlogMessage(
'warning:tie points already exist in dir, skip get_tie_points_by_ZY3ImageMatch'
)
else:
tiepointfile = tiepoints.get_tie_points_by_ZY3ImageMatch(
basefile, warpfile, bkeepmidfile)
if tiepointfile is False:
basic.outputlogMessage('Get tie points by ZY3ImageMatch failed')
return False
xml_obj.add_coregistration_info('tie_points_file', tiepointfile)
#draw tie points rms vector on base image
result_rms_files = '0_1_fs.txt'
tiepoint_vector_ = 'tiepoints_vector.png'
output_tie_points_vector_on_base_image(basefile, result_rms_files,
tiepoint_vector_)
xml_obj.add_coregistration_info('tie_points_drawed_image',
os.path.abspath(tiepoint_vector_))
#check the tie points
try:
rms_files_obj = open(result_rms_files, 'r')
rms_lines = rms_files_obj.readlines()
if len(rms_lines) < 2:
basic.outputlogMessage("%s do not contain tie points information" %
os.path.abspath(result_rms_files))
return False
required_point_count = parameters.get_required_minimum_tiepoint_number(
)
acceptable_rms = parameters.get_acceptable_maximum_RMS()
xml_obj.add_coregistration_info('required_tie_point_count',
str(required_point_count))
xml_obj.add_coregistration_info('acceptable_rms', str(acceptable_rms))
try:
digit_str = re.findall('\d+', rms_lines[0])
tiepoints_count = int(digit_str[0])
xml_obj.add_coregistration_info('tie_points_count',
str(tiepoints_count))
if tiepoints_count < required_point_count:
basic.outputlogMessage(
"ERROR: tiepoints count(%d) is less than required one(%d)"
% (tiepoints_count, required_point_count))
return False
digit_str = re.findall('\d+\.?\d*', rms_lines[1])
totalrms_value = float(digit_str[2])
xml_obj.add_coregistration_info('total_rms_value',
str(totalrms_value))
if totalrms_value > acceptable_rms:
basic.outputlogMessage(
"ERROR:Total RMS(%f) exceeds the acceptable one(%f)" %
(totalrms_value, acceptable_rms))
return False
except ValueError:
return basic.outputlogMessage(str(ValueError))
return False
rms_files_obj.close()
except IOError:
syslog.outputlogMessage(str(IOError))
return False
baseimg = RSImageclass()
if not baseimg.open(basefile):
return False
proj = baseimg.GetProjection()
geotransform = baseimg.GetGeoTransform()
xres = baseimg.GetXresolution()
yres = baseimg.GetYresolution()
try:
Outputtiff = setGCPsfromptsFile(warpfile, proj, geotransform,
tiepointfile)
except RuntimeError as e:
basic.outputlogMessage('setGCPsfromptsFile failed: ')
basic.outputlogMessage(str(e))
return False
if Outputtiff is False:
return False
else:
basic.outputlogMessage('setGCPsfromptsFile completed, Out file: ' +
Outputtiff)
# if not bkeepmidfile:
# os.remove(warpfile)
xml_obj.add_coregistration_info('setted_gcps_file', Outputtiff)
#warp image
warpresultfile = Outputtiff.split('.')[0] + '_warp.tif'
#-order 1 -tps
#-tr xres yres: set output file resolution (in target georeferenced units)
# set resolution as the same as base image is important
order_number = parameters.get_gdalwarp_polynomial_order()
xml_obj.add_coregistration_info('warp_polynomial_order_number',
str(order_number))
if order_number is False:
return False
CommandString = 'gdalwarp ' + ' -order ' + str(
order_number) + ' -r bilinear -tr ' + str(xres) + ' ' + str(
yres) + ' ' + Outputtiff + ' ' + warpresultfile
basic.outputlogMessage(CommandString)
(status, result) = commands.getstatusoutput(CommandString)
basic.outputlogMessage(result)
if not os.path.isfile(warpresultfile):
return False
if not bkeepmidfile:
os.remove(Outputtiff)
return warpresultfile
def calculate_terrain_offset(output, dem_file, image_file, exec_dir,
bkeepmidfile):
if io_function.is_file_exist(
image_file) is False or io_function.is_file_exist(
dem_file, ) is False:
return False
exefile = os.path.join(exec_dir, 'geometry_pro')
nodata = parameters.get_nodata_value()
(centre_lat, centre_lon) = RSImage.get_image_latlon_centre(image_file)
if centre_lat is False or centre_lon is False:
return False
image_obj = RSImageclass()
if image_obj.open(image_file) is False:
return False
dem_obj = RSImageclass()
if dem_obj.open(dem_file) is False:
return False
x_res = image_obj.GetXresolution()
y_res = image_obj.GetYresolution()
x_res_dem = dem_obj.GetXresolution()
y_res_dem = dem_obj.GetYresolution()
image_prj = image_obj.GetProjection()
dem_prj = dem_obj.GetProjection()
#check projection and resolution, and convert it if need
#use orthometricH_file as base image
dem_convertedfile = io_function.get_name_by_adding_tail(dem_file, 'tran')
if x_res != x_res_dem or y_res != y_res_dem or image_prj != dem_prj:
if os.path.isfile(dem_convertedfile) is False:
if map_projection.transforms_raster_srs(
dem_file, image_prj, dem_convertedfile, abs(x_res),
abs(y_res)) is False:
return False
if os.path.isfile(dem_convertedfile):
dem_file = dem_convertedfile
#sub dem file
(ulx, uly, lrx, lry) = RSImage.get_image_proj_extent(image_file)
if ulx is False:
return False
tail = os.path.splitext(os.path.basename(image_file))[0]
dem_file_sub = io_function.get_name_by_adding_tail(dem_file, tail)
if os.path.isfile(dem_file_sub) is False:
if RSImageProcess.subset_image_projwin(dem_file_sub, dem_file, ulx,
uly, lrx, lry) is False:
return False
#calculateing terrain contains a lot of I/O operations, the parallel computing will slow down it
nblockwidth = 8000
nblcckheight = 8000
njobs = 1
logfile = 'cal_terrain_offset_log.txt'
CommandString = exefile \
+ ' -i ' + image_file + ' -d ' + dem_file_sub \
+ ' -o ' + output + ' -n ' + str(nodata)\
+ ' -w ' + str(nblockwidth) + ' -h ' + str(nblcckheight) + ' -j ' +str(njobs) \
+ ' --centre_lat=' + str(centre_lat) \
+ ' --logfile=' + logfile
basic.outputlogMessage(CommandString)
(status, result) = commands.getstatusoutput(CommandString)
basic.outputlogMessage(result)
if bkeepmidfile is False:
# if os.path.isfile(dem_convertedfile):
# io_function.delete_file_or_dir(dem_convertedfile)
if os.path.isfile(dem_file_sub):
io_function.delete_file_or_dir(dem_file_sub)
if os.path.isfile(output):
if os.path.getsize(output) > 0:
return output
else:
basic.outputlogMessage('error: the size of file %s is 0' %
os.path.basename(output))
return False
else:
return False
def prepare_gimpdem_for_Jakobshavn(workdir):
nodata = parameters.get_nodata_value()
#mosaics gimdem files
os.chdir(workdir)
gimpdem_file = ['gimpdem1_2.tif', 'gimpdem2_2.tif']
gimpdem_output = 'dem_gimp_jako.tif'
if os.path.isfile(gimpdem_output) is False:
if RSImageProcess.mosaics_images(gimpdem_file,
gimpdem_output) is False:
return False
geoid_file = 'geoid_hegith_jako.tif'
#convert srs
img_temp = RSImageclass()
if not img_temp.open(gimpdem_output):
return False
x_res = img_temp.GetXresolution()
y_res = img_temp.GetYresolution()
srs_UTM_prj4 = '\'+proj=utm +zone=22 +datum=WGS84 +units=m +no_defs\' '
gimpdem_utm = io_function.get_name_by_adding_tail(gimpdem_output, 'utm22')
if os.path.isfile(gimpdem_utm) is False:
if RSImageProcess.transforms_raster_srs(gimpdem_output, srs_UTM_prj4,
gimpdem_utm, abs(x_res),
abs(y_res)) is False:
return False
# print img_temp.GetGDALDataType(),type(img_temp.GetGDALDataType())
# print img_temp.GetProjection(),type(img_temp.GetProjection())
# print img_temp.GetGeoTransform(),type(img_temp.GetGeoTransform())
#get geoid_height
# srs_longlat_wkt = "GEOGCS[\"WGS 84\",DATUM[\"WGS_1984\",SPHEROID[\"WGS 84\",6378137,298.257223563]],PRIMEM[\"Greenwich\",0],UNIT[\"degree\",0.01745329251994328]]"
# srs_longlat_prj4 = '\'+proj=longlat +datum=WGS84 +no_defs\' '
# image = RSImageclass(syslog)
# if not image.open(gimpdem_utm):
# return False
#
# img_pro = RSImgProclass(syslog)
# dem_data = img_pro.Read_Image_band_data_to_numpy_array_all_pixel(1,gimpdem_utm)
# if dem_data is False:
# return False
#
# # geoid_height = geoid_height + -9999
# geoid_utm_file = basic.get_name_by_adding_tail(geoid_file,'tran',syslog)
# if RSImageProcess.transforms_raster_srs_to_base_image(geoid_file,gimpdem_utm,geoid_utm_file,\
# x_res,y_res,syslog) is False:
# return False
# geoid_height = img_pro.Read_Image_band_data_to_numpy_array_all_pixel(1,geoid_utm_file)
# if geoid_height is False:
# return False
#
# #get ellipsoidal height
# Image_array = dem_data + geoid_height
# gimpdem_utm_elli = basic.get_name_by_adding_tail(gimpdem_utm,'elli',syslog)
# RSImageProcess.save_numpy_2d_array_to_image_tif(gimpdem_utm_elli,Image_array,\
# image.GetGDALDataType(),image.GetGeoTransform(),image.GetProjection(),nodata)
# image = None
# img_pro = None
return True
def convert_orthometricH_to_elliopsoidalH(output, orthometricH_file,
geoidHfile):
if io_function.is_file_exist(
orthometricH_file) is False or io_function.is_file_exist(
geoidHfile) is False:
return False
orthom_obj = RSImageclass()
if orthom_obj.open(orthometricH_file) is False:
return False
geoidH_obj = RSImageclass()
if geoidH_obj.open(geoidHfile) is False:
return False
Nodata = parameters.get_nodata_value()
x_res = orthom_obj.GetXresolution()
y_res = orthom_obj.GetYresolution()
x_res_geoid = geoidH_obj.GetXresolution()
y_res_geoid = geoidH_obj.GetYresolution()
orthom_prj = orthom_obj.GetProjection()
geoid_prj = geoidH_obj.GetProjection()
#check projection and resolution, and convert it if need
#use orthometricH_file as base image
if x_res != x_res_geoid or y_res != y_res_geoid or orthom_prj != geoid_prj:
geoid_convertfile = io_function.get_name_by_adding_tail(
geoidHfile, 'tran')
if os.path.isfile(geoid_convertfile) is False:
if RSImageProcess.transforms_raster_srs(
geoidHfile, orthom_prj, geoid_convertfile, abs(x_res),
abs(y_res)) is False:
return False
else:
basic.outputlogMessage(geoid_convertfile + ' already exist')
#sub geoidHfile base on the small one
(ulx, uly, lrx,
lry) = RSImageProcess.get_image_proj_extent(orthometricH_file)
if ulx is False:
return False
geoid_convertfile_sub = io_function.get_name_by_adding_tail(
geoid_convertfile, 'sub')
if os.path.isfile(geoid_convertfile_sub) is False:
result = RSImageProcess.subset_image_projwin(geoid_convertfile_sub,
geoid_convertfile, ulx,
uly, lrx, lry)
if result is False:
return False
else:
basic.outputlogMessage(geoid_convertfile_sub + ' already exist')
##caculate elliopsoidal height
# orthometricH_data = img_pro.Read_Image_band_data_to_numpy_array_all_pixel(1,orthometricH_file)
# img_pro = None
# img_pro = RSImgProclass(syslog)
# geoidH_data = img_pro.Read_Image_band_data_to_numpy_array_all_pixel(1,geoid_convertfile_sub)
# img_pro = None
# if orthometricH_data.shape != geoidH_data.shape:
# syslog.outputlogMessage("the shape of orthometricH_data and geoidH_data is different")
# return False
#
# nodata = parameters.get_nodata_value(syslog)
# width = orthom_obj.GetWidth()
# height = orthom_obj.GetHeight()
# orthometricH_data = orthometricH_data.astype(numpy.float32)
# geoidH_data = geoidH_data.astype(numpy.float32)
# elliopsoidalH = orthometricH_data + geoidH_data
# elliopsoidalH = elliopsoidalH.reshape(height,width)
#
# RSImageProcess.save_numpy_2d_array_to_image_tif(output,elliopsoidalH,6,\
# orthom_obj.GetGeoTransform(),orthom_obj.GetProjection(),nodata,syslog)
#
# orthom_obj = None
# geoidH_obj = None
CommandString = 'gdal_calc.py -A '+orthometricH_file + ' -B ' + geoid_convertfile_sub +\
' --NoDataValue='+str(Nodata) +' --outfile='+output + ' --calc="A+B"'
if RSImageProcess.exec_commond_string_one_file(CommandString,
output) is False:
return False
else:
basic.outputlogMessage(
"converting orthometric Height to elliopsoidal Height is completed"
)
return True
def get_geoimage_range_geoid_height(outputfile, ref_image):
#convert srs
ref_img_obj = RSImageclass()
if not ref_img_obj.open(ref_image):
return False
# x_res = ref_img_obj.GetXresolution()
# y_res = ref_img_obj.GetYresolution()
width = ref_img_obj.GetWidth()
height = ref_img_obj.GetHeight()
img_pro = RSImgProclass()
ref_image_data = img_pro.Read_Image_band_data_to_numpy_array_all_pixel(
1, ref_image)
if ref_image_data is False:
return False
nodata = parameters.get_nodata_value()
Image_array = ref_image_data.reshape(height, width)
start_x = ref_img_obj.GetStartX()
start_y = ref_img_obj.GetStartY()
resolution_x = ref_img_obj.GetXresolution()
resolution_y = ref_img_obj.GetYresolution()
ref_img_WKT = ref_img_obj.GetProjection()
# ref_img_WKT = RSImageProcess.get_raster_or_vector_srs_info_wkt(ref_image,syslog)
(i, j) = numpy.where(Image_array != nodata)
input_x = start_x + j * resolution_x
input_y = start_y + i * resolution_y
# srs_longlat_prj4 = '\'+proj=longlat +datum=WGS84 +no_defs\''
# intput_proj4 = RSImage.wkt_to_proj4(ref_img_WKT,syslog)
# intput_proj4 = RSImageProcess.get_raster_or_vector_srs_info_proj4(ref_image,syslog)
# map_projection.convert_points_coordinate_proj4(input_x,input_y,intput_proj4,srs_longlat_prj4,syslog)
srs_longlat_wkt = "GEOGCS[\"WGS 84\",DATUM[\"WGS_1984\",SPHEROID[\"WGS 84\",6378137,298.257223563]],PRIMEM[\"Greenwich\",0],UNIT[\"degree\",0.01745329251994328]]"
map_projection.convert_points_coordinate(input_x, input_y, ref_img_WKT,
srs_longlat_wkt)
tempsave_str = []
save_point_txt_file = 'TXTgeoid_' + os.path.splitext(
os.path.basename(ref_image))[0] + '.txt'
if os.path.isfile(save_point_txt_file):
file_object = open(save_point_txt_file, 'r')
savepoints = file_object.readlines()
for point in savepoints:
tempsave_str.append(point)
file_object.close()
io_function.delete_file_or_dir(save_point_txt_file)
file_object = open(save_point_txt_file, 'a')
nsize = Image_array.size
Image_array = Image_array.astype(numpy.float32)
for index in range(0, nsize):
lon_deg = input_x[index]
lat_deg = input_y[index]
if index < len(tempsave_str):
temp_point = tempsave_str[index].split()
value = float(temp_point[2])
else:
(LongitudeDeg, LongitudeMin, LongitudeSec) = degree_to_dms(lon_deg)
(LatitudeDeg, LatitudeMin, LatitudeSec) = degree_to_dms(lat_deg)
value = get_geoid_height(LatitudeDeg, LatitudeMin, LatitudeSec,
LongitudeDeg, LongitudeMin, LongitudeSec,
nodata)
if value is False:
break
saved_point = ('%f %f %f' % (lon_deg, lat_deg, value))
print saved_point
# tempsave_str.append(saved_point)
file_object.writelines(saved_point + '\n')
file_object.flush()
basic.outputlogMessage('Longitude=%f, Latitude=%f, geoid = %f' %
(lon_deg, lat_deg, value))
# Image_array[index] = value
Image_array[i[index], j[index]] = value
print(i[index], j[index], Image_array[i[index], j[index]])
file_object.close()
if index != (nsize - 1):
return False
#save geoid height
RSImageProcess.save_numpy_2d_array_to_image_tif(outputfile,Image_array,\
6,ref_img_obj.GetGeoTransform(),ref_img_WKT,nodata)
return True