def protocolPage(protocol_id):
protocol = getProtocol(protocol_id)
if not os.path.exists('protocol_files/{}.py'.format(protocol_id)):
getDownload(protocol_id)
labware = findLabware(protocol_id)
pipettes = findPipettes(protocol_id)
metadata = findMetadata(protocol_id)
modFields = []
wellmap = 'false'
for data in metadata:
if data['field'].lower() == 'modify':
if data['value'].lower() == 'true':
modFields = findModFields(protocol_id)
if data['field'].lower() == 'well-map':
if data['value'].lower() == 'true':
wellmap = 'true'
return render_template('protocol.html',
id=protocol_id,
name=protocol['name'],
modifiedTime=protocol['modifiedTime'],
pipettes=pipettes,
labware=labware,
metadata=metadata,
modFields=modFields,
wellmap=wellmap)
def ApplyWellMap(filename, wellmap):
folder = "TemporaryFiles"
temp_filename = 'temp_' + filename
editScriptRTPCR(folder, temp_filename, wellmap)
modFields = findModFields(folder, temp_filename)
if modFields != []:
return redirect(url_for('Modify', filename=filename))
return redirect(url_for('Confirm', filename=filename))
def HistoryConfirm(filename):
folder = "History/{}".format(filename)
labware = findLabware(folder, filename)
pipettes = findPipettes(folder, filename)
metadata = findMetadata(folder, filename)
modFields = findModFields(folder, filename)
description = getHistoryDescription(folder)
return render_template('confirm.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList = metadata, modFieldList=modFields, history=True, description=description)
def Protocol(filename):
folder = "ProtocolFiles"
labware = findLabware(folder, filename)
pipettes = findPipettes(folder, filename)
metadata = findMetadata(folder, filename)
modFields = findModFields(folder, filename)
makeTempFile(filename)
wellMap = wellMapEnabled(metadata)
return render_template('protocol.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList=metadata, modFieldList=modFields, wellMapEnabled=wellMap)
def ProtocolHistory(filename):
folder = "History/{}".format(filename)
labware = findLabware(folder, filename)
pipettes = findPipettes(folder, filename)
metadata = findMetadata(folder, filename)
modFields = findModFields(folder, filename)
wellmap = findWellmap(folder, filename)
simulationLog = simulateScript(folder, filename)
description = getHistoryDescription(folder)
return render_template('confirm.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList = metadata, modFieldList=modFields, history=True, wellmap=wellmap, simulationLog=simulationLog[1], error=simulationLog[0], description=description)
def Confirm(filename):
temp_filename = 'temp_' + filename
folder = "TemporaryFiles"
labware = findLabware(folder, temp_filename)
pipettes = findPipettes(folder, temp_filename)
metadata = findMetadata(folder, temp_filename)
modFields = findModFields(folder, temp_filename)
wellmap = findWellmap(folder, temp_filename)
simulationLog = simulateScript(folder, temp_filename)
return render_template('confirm.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList = metadata, modFieldList=modFields, history=False, wellmap=wellmap, simulationLog=simulationLog[1], error=simulationLog[0])
def Modify(filename):
folder = "ProtocolFiles"
modFields = findModFields(folder, filename)
form = modifyForm(fields=modFields)
if form.validate_on_submit():
results=[]
for data in enumerate(form.fields.data):
results.append(data)
editModFields(filename, results)
return redirect(url_for('Confirm', filename=filename))
return render_template('modify.html', protocol=filename, form=form, modFieldList=modFields)
def protocolConfirm(protocol_id):
protocol = getProtocol(protocol_id)
modfields = []
modFields = findModFields(protocol_id)
return render_template('confirm.html',
protocol_id=protocol_id,
protocol_name=protocol['name'],
modifiedTimeProtocol=protocol['modifiedTime'],
wellmap_info=None,
wellmap_name=None,
wellmapdata=None,
modFields=modFields)
def wellMapConfirm(protocol_id, wellmap_id):
protocol = getProtocol(protocol_id)
wellmap = getWellMap(wellmap_id)
wellmapdata = getWellMapData(wellmap_id)
editScriptRTPCR(protocol_id, wellmapdata)
modfields = []
modFields = findModFields(protocol_id)
return render_template('confirm.html',
protocol_id=protocol_id,
protocol_name=protocol['name'],
modifiedTimeProtocol=protocol['modifiedTime'],
wellmap_id=wellmap_id,
wellmap_name=wellmap['name'],
wellmapdata=wellmapdata,
modifiedTimeWellmap=wellmap['modifiedTime'],
modFields=modFields)
def modifyPage(protocol_id):
modFields = findModFields(protocol_id)
# fields = []
# for field in modFields:
# fields.append(field['value'])
form = modifyForm(fields=modFields)
if form.validate_on_submit():
results = []
for data in enumerate(form.fields.data):
results.append(data)
editModFields(protocol_id, results)
return redirect(url_for('protocolPage', protocol_id=protocol_id))
protocol = getProtocol(protocol_id)
return render_template('modify.html',
id=protocol_id,
name=protocol['name'],
form=form,
modFields=modFields)
def sendPage(protocol_id):
protocol = getProtocol(protocol_id)
wellmap = None
modfields = []
modFields = findModFields(protocol_id)
fields = ['description']
form = modifyForm(fields=fields)
if form.validate_on_submit():
results = []
for data in enumerate(form.fields.data):
results.append(data)
sendProtocol(protocol)
saveHistory(protocol, wellmap, modFields, results)
return render_template('send.html',
id=protocol_id,
name=protocol['name'])
return render_template('description.html',
id=protocol_id,
name=protocol['name'],
form=form)