def submit_nsg(self, simjob, validate_only, server):
nsg_template_param_file = "param.properties"
nsg_template_input_file = "input.properties"
return_filename = simjob.sim_name + '-nsg-return'
simjob.append_log("Creating NSG parameter files: " +
nsg_template_param_file + "," +
nsg_template_input_file)
#generate new properties
with open(
os.path.join(simjob.sim_directory_object.sim_results_dir,
simjob.job_directory, nsg_template_input_file),
'w') as the_file:
the_file.write('{}={}\n'.format(
"infile_",
os.path.join(simjob.job_directory, simjob.file_snapshotzip)))
with open(
os.path.join(simjob.sim_directory_object.sim_results_dir,
simjob.job_directory, nsg_template_param_file),
'w') as the_file:
the_file.write('{}={}\n'.format("toolId", simjob.server_nsg_tool))
the_file.write('{}={}\n'.format("filename_", simjob.batch_file))
the_file.write('{}={}\n'.format("number_nodes_",
simjob.server_nodes))
the_file.write('{}={}\n'.format("number_cores_",
simjob.server_cores))
the_file.write('{}={}\n'.format("pythonoption_",
simjob.server_nsg_python))
the_file.write('{}={}\n'.format("outputfilename_",
return_filename))
the_file.write('{}={}\n'.format("runtime_",
simjob.server_max_runtime))
the_file.write('{}={}\n'.format("singlelayer_", "0"))
#validate
simjob.file_resultszip = return_filename + ".tar.gz"
simjob.dir_results = return_filename
simjob.write_properties()
nsg = Client(server.nsg_api_appname, server.nsg_api_appid, server.user,
server.password, server.nsg_api_url)
simjob.append_log("Validating job build with NSG...")
try:
status = nsg.validateJobTemplate(simjob.job_directory_absolute)
if status.isError():
simjob.append_log("NSG template validation failed. See debug.")
else:
simjob.append_log("NSG template validation success")
except CipresError as e:
simjob.append_log("Error validating NSG template: " + e.message)
simjob.append_log("Job stopped")
simjob.status = ServerInterface.nsg_status[3]
simjob.write_properties()
return
if (validate_only):
return
try:
sm = 'false'
if simjob.server_status_email:
sm = 'true'
status = nsg.submitJobTemplate(simjob.job_directory_absolute,
metadata={"statusEmail": sm})
simjob.server_remote_identifier = status.jobUrl
simjob.write_properties()
if status.isError():
simjob.append_log("NSG template submit failed. See debug.")
else:
simjob.append_log("NSG template submit success")
simjob.status = ServerInterface.nsg_status[0]
simjob.write_properties()
except CipresError as e:
simjob.append_log("Error submitting NSG template: " + e.message)
simjob.append_log("Job stopped")
return
def submit_nsg(self, simjob, validate_only, server):
nsg_template_param_file = "param.properties"
nsg_template_input_file = "input.properties"
return_filename = simjob.sim_name + '-nsg-return'
simjob.append_log("Creating NSG parameter files: " +
nsg_template_param_file + "," +
nsg_template_input_file)
#generate new properties
with open(
os.path.join(simjob.sim_directory_object.sim_results_dir,
simjob.job_directory, nsg_template_input_file),
'w') as the_file:
the_file.write('{}={}\n'.format(
"infile_",
os.path.join(simjob.job_directory, simjob.file_snapshotzip)))
with open(
os.path.join(simjob.sim_directory_object.sim_results_dir,
simjob.job_directory, nsg_template_param_file),
'w') as the_file:
the_file.write('{}={}\n'.format("filename_", simjob.batch_file))
the_file.write('{}={}\n'.format("runtime_",
simjob.server_max_runtime))
the_file.write('{}={}\n'.format("outputfilename_",
return_filename))
if (simjob.server_nsg_tool in [
"NEURON77_TG", "NEURON75_TG", "NEURON74_TG", "NEURON73_TG",
"EEGLAB_TG"
]):
the_file.write('{}={}\n'.format("toolId",
simjob.server_nsg_tool))
if (simjob.server_nsg_tool in [
"NEURON77_TG", "NEURON75_TG", "NEURON74_TG", "NEURON73_TG",
"PY_TG_2.7.9", "PY_TG_3.5.0"
]):
the_file.write('{}={}\n'.format("number_nodes_",
simjob.server_nodes))
the_file.write('{}={}\n'.format("number_cores_",
simjob.server_cores))
if (simjob.server_nsg_tool in [
"NEURON77_TG", "NEURON75_TG", "NEURON74_TG", "NEURON73_TG"
]):
the_file.write('{}={}\n'.format("pythonoption_",
simjob.server_nsg_python))
the_file.write('{}={}\n'.format("singlelayer_", "0"))
if (simjob.server_nsg_tool in ["PY_TG_2.7.9", "PY_TG_3.5.0"]):
the_file.write(
'{}={}\n'.format("nrnivmodl_o_", "1")
) #Just assume we'll need neuron at some point. TODO: Add button to turn off
the_file.write(
'{}={}\n'.format("toolId", "PY_TG")
) #Our naming is just for convenience, nsg uses different names and a version
if (simjob.server_nsg_tool in ["PY_TG_2.7.9"]):
the_file.write('{}={}\n'.format("version_", "2.7.9"))
else:
the_file.write('{}={}\n'.format("version_", "3.5.0"))
#validate
simjob.file_resultszip = return_filename + ".tar.gz"
simjob.dir_results = return_filename
simjob.write_properties()
nsg = Client(server.nsg_api_appname, server.nsg_api_appid, server.user,
server.password, server.nsg_api_url)
simjob.append_log("Validating job build with NSG...")
try:
status = nsg.validateJobTemplate(simjob.job_directory_absolute)
if status.isError():
simjob.append_log("NSG template validation failed. See debug.")
else:
simjob.append_log("NSG template validation success")
except CipresError as e:
simjob.append_log("Error validating NSG template: " + e.message)
simjob.append_log("Job stopped")
simjob.status = ServerInterface.nsg_status[3]
simjob.write_properties()
return
if (validate_only):
return
try:
sm = 'false'
if simjob.server_status_email:
sm = 'true'
status = nsg.submitJobTemplate(simjob.job_directory_absolute,
metadata={"statusEmail": sm})
simjob.server_remote_identifier = status.jobUrl
simjob.write_properties()
if status.isError():
simjob.append_log("NSG template submit failed. See debug.")
else:
simjob.append_log("NSG template submit success")
simjob.status = ServerInterface.nsg_status[0]
simjob.write_properties()
except CipresError as e:
simjob.append_log("Error submitting NSG template: " + e.message)
simjob.append_log("Job stopped")
return