def getPatientInformation(self):
if not self.patientInfo:
masterVolume = ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(self.segmentationNode)
self.patientInfo = self.patientInfoTemplate.format(ModuleLogicMixin.getDICOMValue(masterVolume,
DICOMTAGS.PATIENT_NAME),
ModuleLogicMixin.getDICOMValue(masterVolume,
DICOMTAGS.PATIENT_ID),
ModuleLogicMixin.getDICOMValue(masterVolume,
DICOMTAGS.PATIENT_BIRTH_DATE))
return self.patientInfo
def getPatientInformation(self):
if not self.patientInfo:
masterVolume = ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(self.segmentationNode)
self.patientInfo = self.patientInfoTemplate.format(ModuleLogicMixin.getDICOMValue(masterVolume,
DICOMTAGS.PATIENT_NAME),
ModuleLogicMixin.getDICOMValue(masterVolume,
DICOMTAGS.PATIENT_ID),
ModuleLogicMixin.getDICOMValue(masterVolume,
DICOMTAGS.PATIENT_BIRTH_DATE))
return self.patientInfo
def refresh():
self.segmentEditorWidget.editor.masterVolumeNodeSelectorVisible = \
self.measurementReportSelector.currentNode() and \
not ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(self.segmentEditorWidget.segmentationNode)
masterVolume = self.segmentEditorWidget.masterVolumeNode
self.importSegmentationCollapsibleButton.enabled = masterVolume is not None
if not self.importSegmentationCollapsibleButton.collapsed:
self.importSegmentationCollapsibleButton.collapsed = masterVolume is None
self.importLabelMapCollapsibleButton.enabled = masterVolume is not None
if not self.importLabelMapCollapsibleButton.collapsed:
self.importLabelMapCollapsibleButton.collapsed = masterVolume is None
if not self.tableNode:
self.enableReportButtons(False)
self.updateMeasurementsTable(triggered=True)
def refresh():
self.segmentEditorWidget.editor.masterVolumeNodeSelectorVisible = \
self.measurementReportSelector.currentNode() and \
not ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(self.segmentEditorWidget.segmentationNode)
masterVolume = self.segmentEditorWidget.masterVolumeNode
self.importSegmentationCollapsibleButton.enabled = masterVolume is not None
if not self.importSegmentationCollapsibleButton.collapsed:
self.importSegmentationCollapsibleButton.collapsed = masterVolume is None
self.importLabelMapCollapsibleButton.enabled = masterVolume is not None
if not self.importLabelMapCollapsibleButton.collapsed:
self.importLabelMapCollapsibleButton.collapsed = masterVolume is None
if not self.tableNode:
self.enableReportButtons(False)
self.updateMeasurementsTable(triggered=True)
def onSegmentationSelected(self, node):
if not node:
return
masterVolume = ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(node)
if masterVolume:
self.initializeWatchBox(masterVolume)
def getData(self):
annotationLogic = slicer.modules.annotations.logic()
qrLogic = CustomSegmentEditorLogic
data = ""
def find_2nd(string, substring):
return string.find(substring, string.find(substring) + 1)
widget = self.redWidget
for w in [self.redWidget, self.greenWidget]:
ScreenShotHelper.addRuler(w)
self.setFOV2Largest2DRegion(widget)
self.greenWidget.sliceLogic().FitSliceToAll()
fov = self.greenSliceNode.GetFieldOfView()
masterVolume = ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(self.segmentationNode)
xNumSlices = masterVolume.GetImageData().GetDimensions() [0]
xSpacing = masterVolume.GetSpacing()[0]
size = xNumSlices * xSpacing
self.greenSliceNode.SetFieldOfView(size, fov[1] * size/fov[0], fov[2])
tableHelper = vtkMRMLTableNodeHTMLHelper(self.statistics)
for idx, segment in enumerate(qrLogic.getAllSegments(self.segmentationNode)):
redAnnotationNode = self.jumpToSegmentAndCreateScreenShot(self.segmentationNode, segment,
[widget], center=True)
redSS = annotationLogic.GetHTMLRepresentation(redAnnotationNode, 0)
redSS = redSS[find_2nd(redSS, "<img src="):redSS.find(">", find_2nd(redSS, "<img src=")) + 1]
redSS = redSS.replace("width='400'", "width=100%")
greenAnnotationNode = self.jumpToSegmentAndCreateScreenShot(self.segmentationNode, segment,
[self.greenWidget], center=False, crosshair=True)
greenSS = annotationLogic.GetHTMLRepresentation(greenAnnotationNode, 0)
greenSS = greenSS[find_2nd(greenSS, "<img src="):greenSS.find(">", find_2nd(greenSS, "<img src=")) + 1]
greenSS = greenSS.replace("width='400'", "width=100%")
data += '''
<div class="print-friendly">
<h2>{0}</h2>
<table border=1 width='100%' cellPadding=3 cellSpacing=0>
<thead>
<tr>
<th><b>Terminology</b></th>
<th><b>Patient Info</b></th>
</tr>
</thead>
<tr>
<td valign='top' width='50%'>{1}</td>
<td valign='top' width='50%'>{2}</td>
</tr>
</table>
<br>
<table border=1 width='100%' cellPadding=3 cellSpacing=0>
<thead border=1>
<tr>
<th colspan="2"><b>Screenshots</b></th>
</tr>
<tr>
<th><b>Axial</b></th>
<th><b>Coronal</b></th>
</tr>
</thead>
<tr>
<td>{3}</td>
<td>{4}</td>
</tr>
</table>
<br>
<table border=1 width='100%' cellPadding=3 cellSpacing=0>
<thead border=1>
<tr>
<th><b>Measurements</b></th>
</tr>
</thead>
<tr>
<td valign='top' width='100%'>{5}</td>
</tr>
</table>
</div>
'''.format(tableHelper.getNthSegmentName(idx),
self.getTerminologyInformation(segment), self.getPatientInformation(),
redSS, greenSS,
tableHelper.getHeaderAndNthRow(idx))
for w in [self.redWidget, self.greenWidget]:
ScreenShotHelper.hideRuler(w)
# ModuleWidgetMixin.setFOV(sliceLogic, savedFOV)
return data
def getData(self):
annotationLogic = slicer.modules.annotations.logic()
qrLogic = CustomSegmentEditorLogic
data = ""
def find_2nd(string, substring):
return string.find(substring, string.find(substring) + 1)
widget = self.redWidget
for w in [self.redWidget, self.greenWidget]:
ScreenShotHelper.addRuler(w)
self.setFOV2Largest2DRegion(widget)
self.greenWidget.sliceLogic().FitSliceToAll()
fov = self.greenSliceNode.GetFieldOfView()
masterVolume = ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(self.segmentationNode)
xNumSlices = masterVolume.GetImageData().GetDimensions() [0]
xSpacing = masterVolume.GetSpacing()[0]
size = xNumSlices * xSpacing
self.greenSliceNode.SetFieldOfView(size, fov[1] * size/fov[0], fov[2])
tableHelper = vtkMRMLTableNodeHTMLHelper(self.statistics)
for idx, segment in enumerate(qrLogic.getAllSegments(self.segmentationNode)):
redAnnotationNode = self.jumpToSegmentAndCreateScreenShot(self.segmentationNode, segment,
[widget], center=True)
redSS = annotationLogic.GetHTMLRepresentation(redAnnotationNode, 0)
redSS = redSS[find_2nd(redSS, "<img src="):redSS.find(">", find_2nd(redSS, "<img src=")) + 1]
redSS = redSS.replace("width='400'", "width=100%")
greenAnnotationNode = self.jumpToSegmentAndCreateScreenShot(self.segmentationNode, segment,
[self.greenWidget], center=False, crosshair=True)
greenSS = annotationLogic.GetHTMLRepresentation(greenAnnotationNode, 0)
greenSS = greenSS[find_2nd(greenSS, "<img src="):greenSS.find(">", find_2nd(greenSS, "<img src=")) + 1]
greenSS = greenSS.replace("width='400'", "width=100%")
data += '''
<div class="print-friendly">
<h2>{0}</h2>
<table border=1 width='100%' cellPadding=3 cellSpacing=0>
<thead>
<tr>
<th><b>Terminology</b></th>
<th><b>Patient Info</b></th>
</tr>
</thead>
<tr>
<td valign='top' width='50%'>{1}</td>
<td valign='top' width='50%'>{2}</td>
</tr>
</table>
<br>
<table border=1 width='100%' cellPadding=3 cellSpacing=0>
<thead border=1>
<tr>
<th colspan="2"><b>Screenshots</b></th>
</tr>
<tr>
<th><b>Axial</b></th>
<th><b>Coronal</b></th>
</tr>
</thead>
<tr>
<td>{3}</td>
<td>{4}</td>
</tr>
</table>
<br>
<table border=1 width='100%' cellPadding=3 cellSpacing=0>
<thead border=1>
<tr>
<th><b>Measurements</b></th>
</tr>
</thead>
<tr>
<td valign='top' width='100%'>{5}</td>
</tr>
</table>
</div>
'''.format(tableHelper.getNthSegmentName(idx),
self.getTerminologyInformation(segment), self.getPatientInformation(),
redSS, greenSS,
tableHelper.getHeaderAndNthRow(idx))
for w in [self.redWidget, self.greenWidget]:
ScreenShotHelper.hideRuler(w)
# ModuleWidgetMixin.setFOV(sliceLogic, savedFOV)
return data
def onSegmentationSelected(self, node):
if not node:
return
masterVolume = ModuleLogicMixin.getReferencedVolumeFromSegmentationNode(node)
if masterVolume:
self.initializeWatchBox(masterVolume)