def __init__(self):
"""
"""
EDPluginControl.__init__(self)
self.__edPluginExecDatcmp = None
self.__edPluginExecDataver = None
self.__edPluginExecWaitFile = None
self.__edPluginExecAutoSub = None
self.__edPluginSaxsAnalysis = None
self.__edPluginSaxsISPyB = None
self.setXSDataInputClass(XSDataInputBioSaxsSmartMergev1_0)
self.__edPluginExecDatCmp = None
self.lstInput = []
self.curves = []
self.lstMerged = []
self.lstXsdInput = []
self.absoluteFidelity = None
self.relativeFidelity = None
self.dictSimilarities = {} # key: 2-tuple of images, similarities
self.lstSummary = []
self.lstStrInput = []
self.autoRg = None
self.gnom = None
self.volume = None
self.strRadiationDamage = None
self.strMergedFile = None
self.lstSub = []
self.strSubFile = None
self.fConcentration = None
self.xsDataResult = XSDataResultBioSaxsSmartMergev1_0()
self.xsBestBuffer = None
def postProcess(self, _edObject=None):
EDPluginControl.postProcess(self)
self.DEBUG("EDPluginBioSaxsSmartMergev1_0.postProcess")
# Create some output data
xsDataResult = XSDataResultBioSaxsSmartMergev1_0()
xsDataResult.mergedCurve = self.dataInput.mergedCurve
executiveSummary = os.linesep.join(self.lstSummary)
xsDataResult.status = XSDataStatus(
executiveSummary=XSDataString(executiveSummary))
self.setDataOutput(xsDataResult)
self.DEBUG(executiveSummary)
def postProcess(self, _edObject=None):
EDPluginControl.postProcess(self)
self.DEBUG("EDPluginBioSaxsSmartMergev1_3.postProcess")
# Create some output data
xsDataResult = XSDataResultBioSaxsSmartMergev1_0()
xsDataResult.mergedCurve = self.dataInput.mergedCurve
executiveSummary = os.linesep.join(self.lstSummary)
xsDataResult.status = XSDataStatus(executiveSummary=XSDataString(executiveSummary))
if self.autoRg is not None:
xsDataResult.autoRg = self.autoRg
if self.strSubFile is not None and os.path.isfile(self.strSubFile):
xsDataResult.subtractedCurve = XSDataFile(XSDataString(self.strSubFile))
self.setDataOutput(xsDataResult)
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
#self.__edPluginExecDatcmp = None
self.__edPluginExecDataver = None
self.__edPluginExecWaitFile = None
self.__edPluginExecAutoSub = None
self.__edPluginSaxsAnalysis = None
self.__edPluginSaxsISPyB = None
self.setXSDataInputClass(XSDataInputBioSaxsSmartMergev1_0)
#self.__edPluginExecDatCmp = None
self.lstInput = []
self.curves = []
self.forgetLastSample = False
self.lstMerged = []
self.lstDiscarded = []
self.lstXsdInput = []
self.absoluteFidelity = 0.01 #None
self.relativeFidelity = 0.01 #None
self.dictSimilarities = {} # key: 2-tuple of images, similarities
self.lstStrInput = []
self.autoRg = None
self.gnom = None
self.volume = None
self.rti = None
self.strRadiationDamage = None
self.strMergedFile = None
self.lstSub = []
self.strSubFile = None
self.fConcentration = None
self.xsDataResult = XSDataResultBioSaxsSmartMergev1_0()
self.xsBestBuffer = None
self.bestBufferType = ""
self.bufferFrames = []
self.xsScatterPlot = None
self.xsGuinierPlot = None
self.xsKratkyPlot = None
self.xsDensityPlot = None
self.xsdSubtractedCurve = None
self.outdir = None #directory on rnice for analysis results to go to
