def postProcess(self, _edObject=None):
EDPluginExecProcessScript.postProcess(self)
self.DEBUG("EDPluginExecDatPorodv1_0.postProcess")
# Create some output data
logfile = os.path.join(self.getWorkingDirectory(),
self.getScriptLogFileName())
out = open(logfile, "r").read().split()
if self.atsasVersion < "2.6":
try:
res = float(out[0])
except (ValueError, IndexError):
self.error("Unable to read porod log file: " + logfile)
self.setFailure()
else:
xsDataResult = XSDataResultDatPorod(
volume=XSDataDoubleWithUnit(value=res))
self.setDataOutput(xsDataResult)
else:
try:
res = float(out[2])
except (ValueError, IndexError):
self.error("Unable to read porod log file: " + logfile)
self.setFailure()
else:
xsDataResult = XSDataResultDatPorod(
volume=XSDataDoubleWithUnit(value=res))
self.setDataOutput(xsDataResult)
def fileName2xml(filename):
"""Here we create the XML string to be passed to the EDNA plugin from the input filename
This can / should be modified by the final user
@param filename: full path of the input file
@type filename: python string representing the path
@rtype: XML string
@return: python string
"""
if filename.endswith(".jpg"):
xm = None
else:
upperDir = os.path.dirname(os.path.dirname(filename))
if not os.path.isdir(os.path.join(upperDir, "Thumbnail")):
os.makedirs(os.path.join(upperDir, "Thumbnail"), int("775", 8))
destinationPath = os.path.join(upperDir, "Thumbnail")
xsd = XSDataInputExecThumbnail()
xsdFile = XSDataFile()
xsdFile.setPath(XSDataString(filename))
xsd.setInputImagePath(xsdFile)
xsdPath = XSDataFile()
xsdPath.setPath(XSDataString(destinationPath))
xsd.setOutputPath(xsdPath)
# xsd.setLevelsColorize(XSDataBoolean(True))
# xsd.setLevelsNormalize(XSDataBoolean(True))
xsd.setLevelsEqualize(XSDataBoolean(True))
# xsd.setLevelsGamma(XSDataDouble(gamma))
xsd.setLevelsMin(XSDataDouble(0.0))
xsdMax = XSDataDoubleWithUnit()
xsdMax.setValue(99.9)
xsdMax.setUnit(XSDataString("""%"""))
xsd.setLevelsMax(xsdMax)
# xsd.setLevelsAutoContrast(XSDataDouble(1.0))
xsd.setFilterBlur([XSDataInteger(5)])
xsd.setFilterDilatation([XSDataInteger(10)])
# xsd.setCropBorders(XSDataInteger(), XSDataInteger())
xsd.setLevelsInvert(XSDataBoolean(True))
xsd.setThumbHeight(XSDataInteger(256))
xsd.setThumbWidth(XSDataInteger(256))
xml = xsd.marshal()
return xml
def fileName2xml(filename):
"""Here we create the XML string to be passed to the EDNA plugin from the input filename
This can / should be modified by the final user
@param filename: full path of the input file
@type filename: python string representing the path
@rtype: XML string
@return: python string
"""
if filename.endswith(".jpg"):
xm = None
else:
upperDir = os.path.dirname(os.path.dirname(filename))
if not os.path.isdir(os.path.join(upperDir, "Thumbnail")):
os.makedirs(os.path.join(upperDir, "Thumbnail"), int("775", 8))
destinationPath = os.path.join(upperDir, "Thumbnail")
xsd = XSDataInputExecThumbnail()
xsdFile = XSDataFile()
xsdFile.setPath(XSDataString(filename))
xsd.setInputImagePath(xsdFile)
xsdPath = XSDataFile()
xsdPath.setPath(XSDataString(destinationPath))
xsd.setOutputPath(xsdPath)
# xsd.setLevelsColorize(XSDataBoolean(True))
# xsd.setLevelsNormalize(XSDataBoolean(True))
xsd.setLevelsEqualize(XSDataBoolean(True))
# xsd.setLevelsGamma(XSDataDouble(gamma))
xsd.setLevelsMin(XSDataDouble(0.0))
xsdMax = XSDataDoubleWithUnit()
xsdMax.setValue(99.9)
xsdMax.setUnit(XSDataString("""%"""))
xsd.setLevelsMax(xsdMax)
# xsd.setLevelsAutoContrast(XSDataDouble(1.0))
xsd.setFilterBlur([XSDataInteger(5)])
xsd.setFilterDilatation([XSDataInteger(10)])
#xsd.setCropBorders(XSDataInteger(), XSDataInteger())
xsd.setLevelsInvert(XSDataBoolean(True))
xsd.setThumbHeight(XSDataInteger(256))
xsd.setThumbWidth(XSDataInteger(256))
xml = xsd.marshal()
return xml
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
EDVerbose.DEBUG("EDPluginControlPyarchThumbnailGeneratorv1_0.preProcess")
# Check that the input image exists and is of the expected type
strPathToDiffractionImage = self.getDataInput().getDiffractionImage().getPath().getValue()
strImageFileNameExtension = os.path.splitext(strPathToDiffractionImage)[1]
if not strImageFileNameExtension in [".img", ".marccd", ".mccd", ".cbf"]:
print strImageFileNameExtension
EDVerbose.error("Unknown image file name extension for pyarch thumbnail generator: %s" % strPathToDiffractionImage)
self.setFailure()
else:
# Load the waitFile plugin
xsDataInputWaitFile = XSDataInputWaitFile()
xsDataInputWaitFile.setExpectedSize(XSDataInteger(self.__iExpectedSize))
xsDataInputWaitFile.setExpectedFile(self.getDataInput().getDiffractionImage())
if self.getDataInput().getWaitForFileTimeOut():
xsDataInputWaitFile.setTimeOut(self.getDataInput().getWaitForFileTimeOut())
self.__edPluginWaitFile = EDPluginWaitFile()
self.__edPluginWaitFile.setDataInput(xsDataInputWaitFile)
# Load the execution plugin
self.__edPluginExecThumbnail = self.loadPlugin(self.__strExecThumbnailPluginName)
xsDataInputExecThumbnail = XSDataInputExecThumbnail()
xsDataInputExecThumbnail.setInputImagePath(self.getDataInput().getDiffractionImage())
xsDataInputExecThumbnail.setLevelsInvert(XSDataBoolean(True))
xsDataInputExecThumbnail.setLevelsMin(XSDataDoubleWithUnit(0.0))
xsDataDoubleWithUnitLevelsMax = XSDataDoubleWithUnit(99.95)
xsDataDoubleWithUnitLevelsMax.setUnit(XSDataString("%"))
xsDataInputExecThumbnail.setLevelsMax(xsDataDoubleWithUnitLevelsMax)
xsDataInputExecThumbnail.setFilterDilatation([XSDataInteger(4)])
xsDataInputExecThumbnail.setLevelsColorize(XSDataBoolean(False))
xsDataInputExecThumbnail.setThumbHeight(XSDataInteger(1024))
xsDataInputExecThumbnail.setThumbWidth(XSDataInteger(1024))
xsDataInputExecThumbnail.setKeepRatio(XSDataBoolean(False))
# Output path
strImageNameWithoutExt = os.path.basename(os.path.splitext(strPathToDiffractionImage)[0])
strImageDirname = os.path.dirname(strPathToDiffractionImage)
if self.getDataInput().getForcedOutputDirectory():
strForcedOutputDirectory = self.getDataInput().getForcedOutputDirectory().getPath().getValue()
if not os.access(strForcedOutputDirectory, os.W_OK):
EDVerbose.error("Cannot write to forced output directory : %s" % strForcedOutputDirectory)
self.setFailure()
else:
self.strOutputPathWithoutExtension = os.path.join(strForcedOutputDirectory, strImageNameWithoutExt)
else:
# Try to store in the ESRF pyarch directory
strOutputDirname = EDHandlerESRFPyarchv1_0.createPyarchFilePath(strImageDirname)
# Check that output pyarch path exists and is writeable:
bIsOk = False
if strOutputDirname:
if not os.path.exists(strOutputDirname):
# Try to create the directory
try:
os.makedirs(strOutputDirname)
bIsOk = True
except BaseException, e:
EDVerbose.WARNING("Couldn't create the directory %s" % strOutputDirname)
elif os.access(strOutputDirname, os.W_OK):
bIsOk = True
if not bIsOk:
EDVerbose.warning("Cannot write to pyarch directory: %s" % strOutputDirname)
strOutputDirname = tempfile.mkdtemp("", "EDPluginPyarchThumbnailv10_", "/tmp")
EDVerbose.warning("Writing thumbnail images to: %s" % strOutputDirname)
self.strOutputPathWithoutExtension = os.path.join(strOutputDirname, strImageNameWithoutExt)
self.strOutputPath = os.path.join(self.strOutputPathWithoutExtension + ".jpeg")
xsDataInputExecThumbnail.setOutputPath(XSDataFile(XSDataString(self.strOutputPath)))
self.__edPluginExecThumbnail.setDataInput(xsDataInputExecThumbnail)
