def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'matrixA':
obj_ = XSDataMatrixDouble()
obj_.build(child_)
self.setMatrixA(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'matrixU':
obj_ = XSDataMatrixDouble()
obj_.build(child_)
self.setMatrixU(obj_)
XSData.buildChildren(self, child_, nodeName_)
def buildChildren(self, child_, nodeName_):
if child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'matrixA':
obj_ = XSDataMatrixDouble()
obj_.build(child_)
self.setMatrixA(obj_)
elif child_.nodeType == Node.ELEMENT_NODE and \
nodeName_ == 'matrixU':
obj_ = XSDataMatrixDouble()
obj_.build(child_)
self.setMatrixU(obj_)
XSData.buildChildren(self, child_, nodeName_)
def getDataMOSFLMNewmat(self, _strNewmatFileName=None):
self.DEBUG("EDPluginMOSFLMv10.getDataMOSFLMNewmat")
xsDataMOSFLMNewmat = None
strNewmatFileName = None
listOfListOfFloat = []
if (_strNewmatFileName == None):
strNewmatFileName = self.getNewmatFileName()
else:
strNewmatFileName = _strNewmatFileName
strNewmat = None
try:
strNewmat = self.readProcessFile(strNewmatFileName)
except:
strError = self.readProcessErrorLogFile()
if (strError is not None) and (strError != ""):
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat: %s : error reading newmat file : %s" % \
(self.getClassName(), strError)
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat : Cannot read MOSFLM NEWMAT file : " + strNewmatFileName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
#print strNewmat
if (strNewmat is not None):
listLine = strNewmat.split("\n")
# Convert into list of lists of float
for strLine in listLine:
if not strLine.startswith("SYMM"):
listOfListOfFloat.append(self.splitStringIntoListOfFloats(strLine))
# Fill in the data
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(listOfListOfFloat[0][0])
XSDataMatrixDoubleA.setM12(listOfListOfFloat[0][1])
XSDataMatrixDoubleA.setM13(listOfListOfFloat[0][2])
XSDataMatrixDoubleA.setM21(listOfListOfFloat[1][0])
XSDataMatrixDoubleA.setM22(listOfListOfFloat[1][1])
XSDataMatrixDoubleA.setM23(listOfListOfFloat[1][2])
XSDataMatrixDoubleA.setM31(listOfListOfFloat[2][0])
XSDataMatrixDoubleA.setM32(listOfListOfFloat[2][1])
XSDataMatrixDoubleA.setM33(listOfListOfFloat[2][2])
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(listOfListOfFloat[3][0]))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(listOfListOfFloat[3][1]))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(listOfListOfFloat[3][2]))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(listOfListOfFloat[4][0])
XSDataMatrixDoubleU.setM12(listOfListOfFloat[4][1])
XSDataMatrixDoubleU.setM13(listOfListOfFloat[4][2])
XSDataMatrixDoubleU.setM21(listOfListOfFloat[5][0])
XSDataMatrixDoubleU.setM22(listOfListOfFloat[5][1])
XSDataMatrixDoubleU.setM23(listOfListOfFloat[5][2])
XSDataMatrixDoubleU.setM31(listOfListOfFloat[6][0])
XSDataMatrixDoubleU.setM32(listOfListOfFloat[6][1])
XSDataMatrixDoubleU.setM33(listOfListOfFloat[6][2])
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(listOfListOfFloat[7][0]))
xsDataCellRefined.setLength_b(XSDataLength(listOfListOfFloat[7][1]))
xsDataCellRefined.setLength_c(XSDataLength(listOfListOfFloat[7][2]))
xsDataCellRefined.setAngle_alpha(XSDataAngle(listOfListOfFloat[7][3]))
xsDataCellRefined.setAngle_beta(XSDataAngle(listOfListOfFloat[7][4]))
xsDataCellRefined.setAngle_gamma(XSDataAngle(listOfListOfFloat[7][5]))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def getReferenceDataMOSFLMNewmat(self):
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(-0.00826416)
XSDataMatrixDoubleA.setM12(0.00885073)
XSDataMatrixDoubleA.setM13(0.00937013)
XSDataMatrixDoubleA.setM21(0.00126554)
XSDataMatrixDoubleA.setM22(0.01251971)
XSDataMatrixDoubleA.setM23(-0.00845341)
XSDataMatrixDoubleA.setM31(-0.01484956)
XSDataMatrixDoubleA.setM32(-0.00385867)
XSDataMatrixDoubleA.setM33(-0.00593515)
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(1.000))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(2.000))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(3.000))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(-0.4849475)
XSDataMatrixDoubleU.setM12(0.5598049)
XSDataMatrixDoubleU.setM13(0.6718960)
XSDataMatrixDoubleU.setM21(0.0742629)
XSDataMatrixDoubleU.setM22(0.7918670)
XSDataMatrixDoubleU.setM23(-0.6061614)
XSDataMatrixDoubleU.setM31(-0.8713845)
XSDataMatrixDoubleU.setM32(-0.2440595)
XSDataMatrixDoubleU.setM33(-0.4255866)
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(54.8079))
xsDataCellRefined.setLength_b(XSDataLength(59.0751))
xsDataCellRefined.setLength_c(XSDataLength(66.9736))
xsDataCellRefined.setAngle_alpha(XSDataAngle(91.0000))
xsDataCellRefined.setAngle_beta(XSDataAngle(92.0000))
xsDataCellRefined.setAngle_gamma(XSDataAngle(93.0000))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def getDataMOSFLMNewmat(self, _strNewmatFileName=None):
self.DEBUG("EDPluginMOSFLMv10.getDataMOSFLMNewmat")
xsDataMOSFLMNewmat = None
strNewmatFileName = None
listOfListOfFloat = []
if (_strNewmatFileName == None):
strNewmatFileName = self.getNewmatFileName()
else:
strNewmatFileName = _strNewmatFileName
strNewmat = None
try:
strNewmat = self.readProcessFile(strNewmatFileName)
except:
strError = self.readProcessErrorLogFile()
if (strError is not None) and (strError != ""):
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat: %s : error reading newmat file : %s" % \
(self.getClassName(), strError)
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
strErrorMessage = "EDPluginMOSFLMv10.getDataMOSFLMNewmat : Cannot read MOSFLM NEWMAT file : " + strNewmatFileName
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
# print strNewmat
if (strNewmat is not None):
listLine = strNewmat.split("\n")
# Convert into list of lists of float
for strLine in listLine:
if not strLine.startswith("SYMM"):
listOfListOfFloat.append(
self.splitStringIntoListOfFloats(strLine))
# Fill in the data
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(listOfListOfFloat[0][0])
XSDataMatrixDoubleA.setM12(listOfListOfFloat[0][1])
XSDataMatrixDoubleA.setM13(listOfListOfFloat[0][2])
XSDataMatrixDoubleA.setM21(listOfListOfFloat[1][0])
XSDataMatrixDoubleA.setM22(listOfListOfFloat[1][1])
XSDataMatrixDoubleA.setM23(listOfListOfFloat[1][2])
XSDataMatrixDoubleA.setM31(listOfListOfFloat[2][0])
XSDataMatrixDoubleA.setM32(listOfListOfFloat[2][1])
XSDataMatrixDoubleA.setM33(listOfListOfFloat[2][2])
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(
XSDataAngle(listOfListOfFloat[3][0]))
xsDataMOSFLMMissettingsAngles.setPhiy(
XSDataAngle(listOfListOfFloat[3][1]))
xsDataMOSFLMMissettingsAngles.setPhiz(
XSDataAngle(listOfListOfFloat[3][2]))
xsDataMOSFLMNewmat.setMissettingAngles(
xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(listOfListOfFloat[4][0])
XSDataMatrixDoubleU.setM12(listOfListOfFloat[4][1])
XSDataMatrixDoubleU.setM13(listOfListOfFloat[4][2])
XSDataMatrixDoubleU.setM21(listOfListOfFloat[5][0])
XSDataMatrixDoubleU.setM22(listOfListOfFloat[5][1])
XSDataMatrixDoubleU.setM23(listOfListOfFloat[5][2])
XSDataMatrixDoubleU.setM31(listOfListOfFloat[6][0])
XSDataMatrixDoubleU.setM32(listOfListOfFloat[6][1])
XSDataMatrixDoubleU.setM33(listOfListOfFloat[6][2])
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(
listOfListOfFloat[7][0]))
xsDataCellRefined.setLength_b(XSDataLength(
listOfListOfFloat[7][1]))
xsDataCellRefined.setLength_c(XSDataLength(
listOfListOfFloat[7][2]))
xsDataCellRefined.setAngle_alpha(
XSDataAngle(listOfListOfFloat[7][3]))
xsDataCellRefined.setAngle_beta(
XSDataAngle(listOfListOfFloat[7][4]))
xsDataCellRefined.setAngle_gamma(
XSDataAngle(listOfListOfFloat[7][5]))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat
def parseMosflmScriptsOutput(self, _strMOSFLMScript):
"""
This method parses the MOSFLM script generated by Labelit and populates
the A- and U-matrices in the XSDataLabelitMosflmScriptsOutput object.
"""
self.DEBUG("EDPluginLabelitIndexingv1_1.parseMOSFLMMatrices")
xsDataLabelitMosflmScriptsOutput = XSDataLabelitMosflmScriptsOutput()
listMOSFLMScriptLines = _strMOSFLMScript.split("\n")
XSDataMatrixDoubleA = XSDataMatrixDouble()
# Fix for bug 315: it's not enough to just spit the lines
listMOSFLMScriptLine2 = [
listMOSFLMScriptLines[2][0:12], listMOSFLMScriptLines[2][12:24],
listMOSFLMScriptLines[2][24:]
]
listMOSFLMScriptLine3 = [
listMOSFLMScriptLines[3][0:12], listMOSFLMScriptLines[3][12:24],
listMOSFLMScriptLines[3][24:]
]
listMOSFLMScriptLine4 = [
listMOSFLMScriptLines[4][0:12], listMOSFLMScriptLines[4][12:24],
listMOSFLMScriptLines[4][24:]
]
XSDataMatrixDoubleA.setM11(float(listMOSFLMScriptLine2[0]))
XSDataMatrixDoubleA.setM12(float(listMOSFLMScriptLine2[1]))
XSDataMatrixDoubleA.setM13(float(listMOSFLMScriptLine2[2]))
XSDataMatrixDoubleA.setM21(float(listMOSFLMScriptLine3[0]))
XSDataMatrixDoubleA.setM22(float(listMOSFLMScriptLine3[1]))
XSDataMatrixDoubleA.setM23(float(listMOSFLMScriptLine3[2]))
XSDataMatrixDoubleA.setM31(float(listMOSFLMScriptLine4[0]))
XSDataMatrixDoubleA.setM32(float(listMOSFLMScriptLine4[1]))
XSDataMatrixDoubleA.setM33(float(listMOSFLMScriptLine4[2]))
xsDataLabelitMosflmScriptsOutput.setAMatrix(XSDataMatrixDoubleA)
XSDataMatrixDoubleU = XSDataMatrixDouble()
listMOSFLMScriptLine6 = [
listMOSFLMScriptLines[6][0:12], listMOSFLMScriptLines[6][12:24],
listMOSFLMScriptLines[6][24:]
]
listMOSFLMScriptLine7 = [
listMOSFLMScriptLines[7][0:12], listMOSFLMScriptLines[7][12:24],
listMOSFLMScriptLines[7][24:]
]
listMOSFLMScriptLine8 = [
listMOSFLMScriptLines[8][0:12], listMOSFLMScriptLines[8][12:24],
listMOSFLMScriptLines[8][24:]
]
XSDataMatrixDoubleU.setM11(float(listMOSFLMScriptLine6[0]))
XSDataMatrixDoubleU.setM12(float(listMOSFLMScriptLine6[1]))
XSDataMatrixDoubleU.setM13(float(listMOSFLMScriptLine6[2]))
XSDataMatrixDoubleU.setM21(float(listMOSFLMScriptLine7[0]))
XSDataMatrixDoubleU.setM22(float(listMOSFLMScriptLine7[1]))
XSDataMatrixDoubleU.setM23(float(listMOSFLMScriptLine7[2]))
XSDataMatrixDoubleU.setM31(float(listMOSFLMScriptLine8[0]))
XSDataMatrixDoubleU.setM32(float(listMOSFLMScriptLine8[1]))
XSDataMatrixDoubleU.setM33(float(listMOSFLMScriptLine8[2]))
xsDataLabelitMosflmScriptsOutput.setUMatrix(XSDataMatrixDoubleU)
return xsDataLabelitMosflmScriptsOutput
def parseMosflmScriptsOutput(self, _strMOSFLMScript):
"""
This method parses the MOSFLM script generated by Labelit and populates
the A- and U-matrices in the XSDataLabelitMosflmScriptsOutput object.
"""
self.DEBUG("EDPluginLabelitIndexingv1_1.parseMOSFLMMatrices")
xsDataLabelitMosflmScriptsOutput = XSDataLabelitMosflmScriptsOutput()
listMOSFLMScriptLines = _strMOSFLMScript.split("\n")
XSDataMatrixDoubleA = XSDataMatrixDouble()
# Fix for bug 315: it's not enough to just spit the lines
listMOSFLMScriptLine2 = [ listMOSFLMScriptLines[2][0:12],
listMOSFLMScriptLines[2][12:24],
listMOSFLMScriptLines[2][24:] ]
listMOSFLMScriptLine3 = [ listMOSFLMScriptLines[3][0:12],
listMOSFLMScriptLines[3][12:24],
listMOSFLMScriptLines[3][24:] ]
listMOSFLMScriptLine4 = [ listMOSFLMScriptLines[4][0:12],
listMOSFLMScriptLines[4][12:24],
listMOSFLMScriptLines[4][24:] ]
XSDataMatrixDoubleA.setM11(float(listMOSFLMScriptLine2[0]))
XSDataMatrixDoubleA.setM12(float(listMOSFLMScriptLine2[1]))
XSDataMatrixDoubleA.setM13(float(listMOSFLMScriptLine2[2]))
XSDataMatrixDoubleA.setM21(float(listMOSFLMScriptLine3[0]))
XSDataMatrixDoubleA.setM22(float(listMOSFLMScriptLine3[1]))
XSDataMatrixDoubleA.setM23(float(listMOSFLMScriptLine3[2]))
XSDataMatrixDoubleA.setM31(float(listMOSFLMScriptLine4[0]))
XSDataMatrixDoubleA.setM32(float(listMOSFLMScriptLine4[1]))
XSDataMatrixDoubleA.setM33(float(listMOSFLMScriptLine4[2]))
xsDataLabelitMosflmScriptsOutput.setAMatrix(XSDataMatrixDoubleA)
XSDataMatrixDoubleU = XSDataMatrixDouble()
listMOSFLMScriptLine6 = [ listMOSFLMScriptLines[6][0:12],
listMOSFLMScriptLines[6][12:24],
listMOSFLMScriptLines[6][24:] ]
listMOSFLMScriptLine7 = [ listMOSFLMScriptLines[7][0:12],
listMOSFLMScriptLines[7][12:24],
listMOSFLMScriptLines[7][24:] ]
listMOSFLMScriptLine8 = [ listMOSFLMScriptLines[8][0:12],
listMOSFLMScriptLines[8][12:24],
listMOSFLMScriptLines[8][24:] ]
XSDataMatrixDoubleU.setM11(float(listMOSFLMScriptLine6[0]))
XSDataMatrixDoubleU.setM12(float(listMOSFLMScriptLine6[1]))
XSDataMatrixDoubleU.setM13(float(listMOSFLMScriptLine6[2]))
XSDataMatrixDoubleU.setM21(float(listMOSFLMScriptLine7[0]))
XSDataMatrixDoubleU.setM22(float(listMOSFLMScriptLine7[1]))
XSDataMatrixDoubleU.setM23(float(listMOSFLMScriptLine7[2]))
XSDataMatrixDoubleU.setM31(float(listMOSFLMScriptLine8[0]))
XSDataMatrixDoubleU.setM32(float(listMOSFLMScriptLine8[1]))
XSDataMatrixDoubleU.setM33(float(listMOSFLMScriptLine8[2]))
xsDataLabelitMosflmScriptsOutput.setUMatrix(XSDataMatrixDoubleU)
return xsDataLabelitMosflmScriptsOutput
def getReferenceDataMOSFLMNewmat(self):
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
XSDataMatrixDoubleA = XSDataMatrixDouble()
XSDataMatrixDoubleA.setM11(-0.00826416)
XSDataMatrixDoubleA.setM12(0.00885073)
XSDataMatrixDoubleA.setM13(0.00937013)
XSDataMatrixDoubleA.setM21(0.00126554)
XSDataMatrixDoubleA.setM22(0.01251971)
XSDataMatrixDoubleA.setM23(-0.00845341)
XSDataMatrixDoubleA.setM31(-0.01484956)
XSDataMatrixDoubleA.setM32(-0.00385867)
XSDataMatrixDoubleA.setM33(-0.00593515)
xsDataMOSFLMNewmat.setAMatrix(XSDataMatrixDoubleA)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(1.000))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(2.000))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(3.000))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
XSDataMatrixDoubleU = XSDataMatrixDouble()
XSDataMatrixDoubleU.setM11(-0.4849475)
XSDataMatrixDoubleU.setM12(0.5598049)
XSDataMatrixDoubleU.setM13(0.6718960)
XSDataMatrixDoubleU.setM21(0.0742629)
XSDataMatrixDoubleU.setM22(0.7918670)
XSDataMatrixDoubleU.setM23(-0.6061614)
XSDataMatrixDoubleU.setM31(-0.8713845)
XSDataMatrixDoubleU.setM32(-0.2440595)
XSDataMatrixDoubleU.setM33(-0.4255866)
xsDataMOSFLMNewmat.setUMatrix(XSDataMatrixDoubleU)
xsDataCellRefined = XSDataCell()
xsDataCellRefined.setLength_a(XSDataLength(54.8079))
xsDataCellRefined.setLength_b(XSDataLength(59.0751))
xsDataCellRefined.setLength_c(XSDataLength(66.9736))
xsDataCellRefined.setAngle_alpha(XSDataAngle(91.0000))
xsDataCellRefined.setAngle_beta(XSDataAngle(92.0000))
xsDataCellRefined.setAngle_gamma(XSDataAngle(93.0000))
xsDataMOSFLMNewmat.setRefinedCell(xsDataCellRefined)
return xsDataMOSFLMNewmat