def process(self, _edPlugin=None):
EDPluginControl.process(self, _edPlugin)
self.DEBUG("EDPluginControlInterfaceToMXCuBEv1_3.process...")
xsDataInputMXCuBE = self.getDataInput()
xsDataInputInterface = XSDataInputInterface()
self.edPluginControlInterface = self.loadPlugin(self.strPluginControlInterface)
xsDataFirstImage = None
for xsDataSetMXCuBE in xsDataInputMXCuBE.getDataSet():
for xsDataFile in xsDataSetMXCuBE.getImageFile():
xsDataInputInterface.addImagePath(xsDataFile)
if xsDataFirstImage is None:
xsDataFirstImage = xsDataFile
xsDataExperimentalCondition = self.getFluxAndBeamSizeFromISPyB(xsDataFirstImage, \
xsDataInputMXCuBE.getExperimentalCondition())
xsDataInputInterface.setExperimentalCondition(xsDataExperimentalCondition)
xsDataInputInterface.setDiffractionPlan(xsDataInputMXCuBE.getDiffractionPlan())
xsDataInputInterface.setSample(xsDataInputMXCuBE.getSample())
xsDataInputInterface.setDataCollectionId(xsDataInputMXCuBE.getDataCollectionId())
self.edPluginControlInterface.setDataInput(xsDataInputInterface)
if self.edPluginControlInterface is not None:
self.connectProcess(self.edPluginControlInterface.executeSynchronous)
self.edPluginControlInterface.connectSUCCESS(self.doSuccessActionInterface)
self.edPluginControlInterface.connectFAILURE(self.doFailureActionInterface)
def preProcess(self, _edPlugin=None):
"""
This method prepares the input for the CCP4i plugin and loads it.
"""
EDPluginControl.preProcess(self, _edPlugin)
self.DEBUG("EDPluginControlInterfaceToMXCuBEv1_3.preProcess...")
self.tStart = time.time()
xsDataInputMXCuBE = self.getDataInput()
xsDataInputInterface = XSDataInputInterface()
self.edPluginControlInterface = self.loadPlugin(
self.strPluginControlInterface)
for xsDataSetMXCuBE in xsDataInputMXCuBE.getDataSet():
for xsDataFile in xsDataSetMXCuBE.getImageFile():
xsDataInputInterface.addImagePath(xsDataFile)
xsDataInputInterface.setExperimentalCondition(
xsDataInputMXCuBE.getExperimentalCondition())
xsDataInputInterface.setDiffractionPlan(
xsDataInputMXCuBE.getDiffractionPlan())
xsDataInputInterface.setSample(xsDataInputMXCuBE.getSample())
xsDataInputInterface.setDataCollectionId(
xsDataInputMXCuBE.getDataCollectionId())
self.edPluginControlInterface.setDataInput(xsDataInputInterface)
#self.edPluginExecOutputHTML = self.loadPlugin(self.strPluginExecOutputHTMLName, "OutputHTML")
self.edPluginExecSimpleHTML = self.loadPlugin(
self.strPluginExecSimpleHTMLName, "SimpleHTML")
self.xsDataResultMXCuBE = XSDataResultMXCuBE()
def process(self, _edPlugin=None):
EDPluginControl.process(self, _edPlugin)
self.DEBUG("EDPluginControlInterfaceToMXCuBEv1_3.process...")
xsDataInputMXCuBE = self.getDataInput()
xsDataInputInterface = XSDataInputInterface()
self.edPluginControlInterface = self.loadPlugin(
self.strPluginControlInterface)
xsDataFirstImage = None
for xsDataSetMXCuBE in xsDataInputMXCuBE.getDataSet():
for xsDataFile in xsDataSetMXCuBE.getImageFile():
xsDataInputInterface.addImagePath(xsDataFile)
if xsDataFirstImage is None:
xsDataFirstImage = xsDataFile
xsDataExperimentalCondition = self.getFluxAndBeamSizeFromISPyB(xsDataFirstImage, \
xsDataInputMXCuBE.getExperimentalCondition())
xsDataInputInterface.setExperimentalCondition(
xsDataExperimentalCondition)
xsDataInputInterface.setDiffractionPlan(
xsDataInputMXCuBE.getDiffractionPlan())
xsDataInputInterface.setSample(xsDataInputMXCuBE.getSample())
xsDataInputInterface.setDataCollectionId(
xsDataInputMXCuBE.getDataCollectionId())
self.edPluginControlInterface.setDataInput(xsDataInputInterface)
if self.edPluginControlInterface is not None:
self.connectProcess(
self.edPluginControlInterface.executeSynchronous)
self.edPluginControlInterface.connectSUCCESS(
self.doSuccessActionInterface)
self.edPluginControlInterface.connectFAILURE(
self.doFailureActionInterface)
def preProcess(self, _edPlugin=None):
"""
This method prepares the input for the CCP4i plugin and loads it.
"""
EDPluginControl.preProcess(self, _edPlugin)
self.DEBUG("EDPluginControlInterfaceToMXCuBEv1_3.preProcess...")
self.tStart = time.time()
xsDataInputMXCuBE = self.getDataInput()
xsDataInputInterface = XSDataInputInterface()
self.edPluginControlInterface = self.loadPlugin(self.strPluginControlInterface)
for xsDataSetMXCuBE in xsDataInputMXCuBE.getDataSet():
for xsDataFile in xsDataSetMXCuBE.getImageFile():
xsDataInputInterface.addImagePath(xsDataFile)
xsDataInputInterface.setExperimentalCondition(xsDataInputMXCuBE.getExperimentalCondition())
xsDataInputInterface.setDiffractionPlan(xsDataInputMXCuBE.getDiffractionPlan())
xsDataInputInterface.setSample(xsDataInputMXCuBE.getSample())
xsDataInputInterface.setDataCollectionId(xsDataInputMXCuBE.getDataCollectionId())
self.edPluginControlInterface.setDataInput(xsDataInputInterface)
#self.edPluginExecOutputHTML = self.loadPlugin(self.strPluginExecOutputHTMLName, "OutputHTML")
self.edPluginExecSimpleHTML = self.loadPlugin(self.strPluginExecSimpleHTMLName, "SimpleHTML")
self.xsDataResultMXCuBE = XSDataResultMXCuBE()
def process(self, _edPlugin=None):
EDPluginControl.process(self, _edPlugin)
self.DEBUG("EDPluginControlInterfaceToMXCuBEv1_4.process...")
xsDataInputMXCuBE = self.getDataInput()
xsDataInputInterface = XSDataInputInterface()
self.edPluginControlInterface = self.loadPlugin(self.strPluginControlInterface)
self.xsDataFirstImage = None
for xsDataSetMXCuBE in xsDataInputMXCuBE.getDataSet():
for xsDataFile in xsDataSetMXCuBE.getImageFile():
if xsDataFile.path.value.endswith(".h5"):
self.bIsEigerDetector = True
self.xsDataFirstImage = xsDataFile
xsDataInputControlH5ToCBF = XSDataInputControlH5ToCBF()
xsDataInputControlH5ToCBF.hdf5File = XSDataFile(xsDataFile.path)
xsDataInputControlH5ToCBF.imageNumber = XSDataInteger(
EDUtilsImage.getImageNumber(xsDataFile.path.value)
)
edPluginControlH5ToCBF = self.loadPlugin(self.strPluginControlH5ToCBF, "ControlH5ToCBF")
edPluginControlH5ToCBF.dataInput = xsDataInputControlH5ToCBF
edPluginControlH5ToCBF.executeSynchronous()
cbfFile = edPluginControlH5ToCBF.dataOutput.outputCBFFile
xsDataInputInterface.addImagePath(cbfFile)
else:
xsDataInputInterface.addImagePath(xsDataFile)
if self.xsDataFirstImage is None:
self.xsDataFirstImage = xsDataFile
xsDataExperimentalCondition = self.getFluxAndBeamSizeFromISPyB(
self.xsDataFirstImage, xsDataInputMXCuBE.getExperimentalCondition()
)
xsDataInputInterface.setExperimentalCondition(xsDataExperimentalCondition)
xsDataInputInterface.setDiffractionPlan(xsDataInputMXCuBE.getDiffractionPlan())
xsDataInputInterface.setSample(xsDataInputMXCuBE.getSample())
xsDataInputInterface.setDataCollectionId(xsDataInputMXCuBE.getDataCollectionId())
self.edPluginControlInterface.setDataInput(xsDataInputInterface)
if self.edPluginControlInterface is not None:
self.connectProcess(self.edPluginControlInterface.executeSynchronous)
self.edPluginControlInterface.connectSUCCESS(self.doSuccessActionInterface)
self.edPluginControlInterface.connectFAILURE(self.doFailureActionInterface)
def process(self, _edPlugin=None):
EDPluginControl.process(self, _edPlugin)
self.DEBUG("EDPluginControlInterfaceToMXCuBEv1_4.process...")
xsDataInputMXCuBE = self.getDataInput()
xsDataInputInterface = XSDataInputInterface()
self.edPluginControlInterface = self.loadPlugin(self.strPluginControlInterface)
self.xsDataFirstImage = None
for xsDataSetMXCuBE in xsDataInputMXCuBE.getDataSet():
for xsDataFile in xsDataSetMXCuBE.getImageFile():
if xsDataFile.path.value.endswith(".h5"):
self.bIsEigerDetector = True
self.xsDataFirstImage = xsDataFile
xsDataInputControlH5ToCBF = XSDataInputControlH5ToCBF()
xsDataInputControlH5ToCBF.hdf5File = XSDataFile(xsDataFile.path)
xsDataInputControlH5ToCBF.imageNumber = XSDataInteger(EDUtilsImage.getImageNumber(xsDataFile.path.value))
edPluginControlH5ToCBF = self.loadPlugin(self.strPluginControlH5ToCBF, "ControlH5ToCBF")
edPluginControlH5ToCBF.dataInput = xsDataInputControlH5ToCBF
edPluginControlH5ToCBF.executeSynchronous()
cbfFile = edPluginControlH5ToCBF.dataOutput.outputCBFFile
xsDataInputInterface.addImagePath(cbfFile)
else:
xsDataInputInterface.addImagePath(xsDataFile)
if self.xsDataFirstImage is None:
self.xsDataFirstImage = xsDataFile
# Check that images are on disk, otherwise wait
for xsDataImagePath in xsDataInputInterface.imagePath:
imagePath = xsDataImagePath.path.value
if os.path.exists(imagePath):
message = "Input file ok: {0}".format(imagePath)
self.screen(message)
self.sendMessageToMXCuBE(message)
else:
self.sendMessageToMXCuBE("Waiting for file: {0}, timeout {1} s".format(imagePath, self.fMXWaitFileTimeOut))
edPluginMXWaitFile = self.loadPlugin(self.strPluginMXWaitFileName)
xsDataInputMXWaitFile = XSDataInputMXWaitFile()
xsDataInputMXWaitFile.file = XSDataFile(XSDataString(imagePath))
xsDataInputMXWaitFile.setSize(XSDataInteger(self.minImageSize))
xsDataInputMXWaitFile.setTimeOut(XSDataTime(self.fMXWaitFileTimeOut))
self.DEBUG("Wait file timeOut set to %f" % self.fMXWaitFileTimeOut)
edPluginMXWaitFile.setDataInput(xsDataInputMXWaitFile)
edPluginMXWaitFile.executeSynchronous()
if edPluginMXWaitFile.dataOutput.timedOut.value:
errorMessage = "ERROR! File {0} does not exist on disk.".format(imagePath)
self.ERROR(errorMessage)
self.sendMessageToMXCuBE(errorMessage, "error")
self.setFailure()
break
xsDataExperimentalCondition = self.getFluxAndBeamSizeFromISPyB(self.xsDataFirstImage, \
xsDataInputMXCuBE.getExperimentalCondition())
xsDataInputInterface.setExperimentalCondition(xsDataExperimentalCondition)
xsDataInputInterface.setDiffractionPlan(xsDataInputMXCuBE.getDiffractionPlan())
xsDataInputInterface.setSample(xsDataInputMXCuBE.getSample())
xsDataInputInterface.setDataCollectionId(xsDataInputMXCuBE.getDataCollectionId())
self.edPluginControlInterface.setDataInput(xsDataInputInterface)
if not self.isFailure() and self.edPluginControlInterface is not None:
self.connectProcess(self.edPluginControlInterface.executeSynchronous)
self.edPluginControlInterface.connectSUCCESS(self.doSuccessActionInterface)
self.edPluginControlInterface.connectFAILURE(self.doFailureActionInterface)
