class EDPluginControlCharacterisationv2_0(EDPluginControl):
"""
The Plugin that controls the whole characterisation: Indexing-Integration-(Kappa)Strategy
Indexing-Integration is the same as mxv1 characterisation.
KappaStrategy:
Preferred Strategy is given at the initial orientation, but if KAPPA features are enabled,
strategies are calculated to some alignments.
"""
def __init__ (self):
"""
"""
EDPluginControl.__init__(self)
#self.setXSDataInputClass( XSDataInputCharacterisation )
#self.setXSDataInputClass(EDList)
#self.strPluginIndexingName = "EDPluginControlIndexingv2_0"
self.strPluginIndexingName = "EDPluginControlIndexingv10"
self.edPluginIndexing = None
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
self.edPluginIntegration = None
self.xsDataResultCharacterisationv2_0 = None
self.xsDataResultCharacterisation = None
self.xsDataInputStrategy = None
self.setXSDataInputClass(XSDataInputCharacterisationv2_0)
EDFactoryPluginStatic.loadModule("XSDataMXv1")
import XSDataMXv1
self.setXSDataInputClass(XSDataMXv1.XSDataInputCharacterisation, "mxv1InputCharacterisation")
EDFactoryPluginStatic.loadModule("XSDataMXv2")
import XSDataMXv2
self.setXSDataInputClass(XSDataMXv2.XSDataCollection, "mxv2DataCollection")
def checkParameters(self):
"""
Checks the mandatory parameters
"""
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.checkParameters")
# Check for mxv1InputCharacterisation:
if self.hasDataInput():
if self.hasDataInput("mxv1InputCharacterisation") or self.hasDataInput("mxv2DataCollection"):
EDVerbose.WARNING("Ambiguous input! Both XSDataInputCharacterisatiov2_0 input, and mxv1InputCharacterisation or mxv2DataCollection input(s), are given")
self.setDataInput(self.getDataInput().getMxv1InputCharacterisation().marshal(), "mxv1InputCharacterisation")
self.setDataInput(self.getDataInput().getMxv2DataCollection().marshal(), "mxv2DataCollection")
# Check for mxv1InputCharacterisation
self.checkMandatoryParameters(self.getDataInput("mxv1InputCharacterisation"), "Data Input is None")
self.checkMandatoryParameters(self.getDataInput("mxv1InputCharacterisation")[0].getDataCollection(), "dataCollection")
self.checkMandatoryParameters(self.getDataInput("mxv1InputCharacterisation")[0].getDataCollection().getDiffractionPlan(), "diffractionPlan")
def preProcess(self, _edObject=None):
"""
Gets the Configuration Parameters, if found, overrides default parameters
"""
EDPluginControl.preProcess(self, _edObject)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.preProcess...")
self.edPluginIndexing = self.loadPlugin(self.strPluginIndexingName , "Indexing")
self.edPluginIntegration = self.loadPlugin(self.strPluginIntegrationName, "Integration")
self.edPluginStrategy = self.loadPlugin(self.strPluginStrategyName , "Strategy")
if (self.edPluginIndexing is not None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.preProcess: " + self.strPluginIndexingName + " Found... setting Data Input")
# create Data Input for indexing
xsDataInputStrategy = self.getDataInput("mxv1InputCharacterisation")[0]
xsDataCollection = xsDataInputStrategy.getDataCollection()
#xsDataSample = xsDataCollection.getSample()
xsDataSubWedgeList = xsDataCollection.getSubWedge()
xsDataExperimentalCondition = xsDataSubWedgeList[0].getExperimentalCondition()
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(xsDataCollection)
xsDataIndexingInput.setExperimentalCondition(xsDataExperimentalCondition)
xsDataDiffractionPlan = xsDataCollection.getDiffractionPlan()
xsDataStringForcedSpaceGroup = xsDataDiffractionPlan.getForcedSpaceGroup()
if (xsDataStringForcedSpaceGroup is not None):
xsDataCrystal = XSDataCrystal()
xsDataSpaceGroup = XSDataSpaceGroup()
xsDataSpaceGroup.setName(xsDataStringForcedSpaceGroup)
xsDataCrystal.setSpaceGroup(xsDataSpaceGroup)
xsDataIndexingInput.setCrystal(xsDataCrystal)
self.edPluginIndexing.setDataInput(xsDataIndexingInput)
# Populate characterisation object
self.xsDataResultCharacterisationv2_0 = XSDataResultCharacterisationv2_0()
self.xsDataResultCharacterisation = XSDataResultCharacterisation()
self.xsDataResultCharacterisationv2_0.setMxv1ResultCharacterisation(self.xsDataResultCharacterisation)
self.xsDataResultCharacterisation.setDataCollection(XSDataCollection.parseString(xsDataCollection.marshal()))
def process(self, _edObject=None):
EDPluginControl.process(self, _edObject)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.process")
self.connectProcess(self.edPluginIndexing.executeSynchronous)
self.edPluginIndexing.connectSUCCESS(self.doIndexingToIntegrationTransition)
self.edPluginIndexing.connectFAILURE(self.doFailureActionIndexing)
self.edPluginIntegration.connectSUCCESS(self.doIntegrationToStrategyTransition)
self.edPluginIntegration.connectFAILURE(self.doFailureActionIntegration)
self.edPluginStrategy.connectFAILURE(self.doFailureActionStrategy)
self.edPluginStrategy.connectSUCCESS(self.doSuccessActionStrategy)
def postProcess(self, _edObject=None):
"""
"""
EDPluginControl.postProcess(self, _edObject)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.postProcess")
if (self.xsDataResultCharacterisationv2_0 is not None):
self.setDataOutput(self.xsDataResultCharacterisationv2_0)
def doIndexingToIntegrationTransition(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.doIndexingToIntegrationTransition")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
xsDataIndexingResult = self.edPluginIndexing.getDataOutput()
self.xsDataResultCharacterisation.setIndexingResult(xsDataIndexingResult)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(self.xsDataResultCharacterisation.getDataCollection())
xsDataIntegrationInput.setExperimentalConditionRefined(xsDataIndexingResult.getSelectedSolution().getExperimentalConditionRefined())
xsDataIntegrationInput.setSelectedIndexingSolution(xsDataIndexingResult.getSelectedSolution())
self.edPluginIntegration.setDataInput(xsDataIntegrationInput)
self.edPluginIntegration.executeSynchronous()
def doIntegrationToStrategyTransition(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
xsDataIntegrationOutput = self.edPluginIntegration.getDataOutput()
self.xsDataResultCharacterisation.setIntegrationResult(xsDataIntegrationOutput)
#EDVerbose.DEBUG( self.xsDataExperimentCharacterisation.marshal() )
from XSDataMXv1 import XSDataInputStrategy
xsDataInputStrategyOLD = XSDataInputStrategy()
xsDataSolutionSelected = self.xsDataResultCharacterisation.getIndexingResult().getSelectedSolution()
xsDataInputStrategyOLD.setCrystalRefined(xsDataSolutionSelected.getCrystal())
xsDataInputStrategyOLD.setSample(self.xsDataResultCharacterisation.getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = xsDataIntegrationOutput.getIntegrationSubWedgeResult()
xsDataInputStrategyOLD.setBestFileContentDat(xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategyOLD.setBestFileContentPar(xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategyOLD.setExperimentalCondition(xsDataIntegrationSubWedgeResultList[0].getExperimentalConditionRefined())
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategyOLD.addBestFileContentHKL(xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategyOLD.setDiffractionPlan(self.xsDataResultCharacterisation.getDataCollection().getDiffractionPlan())
xsDataInputStrategyOLD.setXdsBackgroundImage(self.xsDataResultCharacterisation.getXdsBackgroundImage())
#print xsDataInputStrategy.marshal()
self.edPluginStrategy.setDataInput(xsDataInputStrategyOLD, "mxv1InputStrategy")
if self.hasDataInput("mxv2DataCollection"):
self.edPluginStrategy.setDataInput(self.getDataInput("mxv2DataCollection")[0], "mxv2DataCollection")
self.edPluginStrategy.setDataInput(self.xsDataResultCharacterisation.getIndexingResult(), "mxv1IndexingResult")
# xsDataInputStrategy= EDList()
# xsDataInputStrategy.add(xsDataInputStrategyOLD)
# xsDataInputStrategy.add(self.getDataInput()[1])
# xsDataInputStrategy.add(self.xsDataResultCharacterisationv2_0.getIndexingResult())
# self.edPluginStrategy.setDataInput( xsDataInputStrategy )
self.edPluginStrategy.executeSynchronous()
def doFailureActionIndexing(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.doFailureActionIndexing")
self.retrieveFailureMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doFailureActionIndexing")
def doFailureActionIntegration(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.doFailureActionIntegration")
self.retrieveFailureMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doFailureActionIntegration")
def doFailureActionStrategy(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.doFailureActionStrategy")
self.retrieveFailureMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doFailureActionStrategy")
def doSuccessActionStrategy(self, _edPlugin):
"""
retrieve the potential warning messages
"""
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.doSuccessActionStrategy")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doSuccessActionStrategy")
xsDataResultStrategy = self.edPluginStrategy.getDataOutput()
self.xsDataResultCharacterisation.setStrategyResult(xsDataResultStrategy)
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.configure")
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration != None):
strPointlessOn = EDConfiguration.getStringParamValue(pluginConfiguration, "POINTLESS")
if(strPointlessOn == None or strPointlessOn != "True"):
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def generateExecutiveSummary(self, _edPlugin):
"""
Generates a summary of the execution of the plugin.
"""
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.generateExecutiveSummary")
self.addExecutiveSummaryLine("Summary of characterisation:")
self.addErrorWarningMessagesToExecutiveSummary("Characterisation failure! Error messages: ")
self.addExecutiveSummarySeparator()
xsDataInputStrategy = self.getDataInput("mxv1InputCharacterisation")[0]
xsDataCollection = xsDataInputStrategy.getDataCollection()
xsDataDiffractionPlan = xsDataCollection.getDiffractionPlan()
self.addExecutiveSummaryLine("Diffraction plan:")
if (xsDataDiffractionPlan.getComplexity() is not None):
self.addExecutiveSummaryLine("BEST complexity : %s" % xsDataDiffractionPlan.getComplexity().getValue())
if (xsDataDiffractionPlan.getAimedCompleteness() is not None):
self.addExecutiveSummaryLine("Aimed completeness : %6.1f [%%]" % (100.0 * xsDataDiffractionPlan.getAimedCompleteness().getValue()))
if (xsDataDiffractionPlan.getRequiredCompleteness() is not None):
self.addExecutiveSummaryLine("Required completeness : %6.1f [%%]" % (100.0 * xsDataDiffractionPlan.getRequiredCompleteness().getValue()))
if (xsDataDiffractionPlan.getAimedIOverSigmaAtHighestResolution() is not None):
self.addExecutiveSummaryLine("Aimed I/sigma at highest resolution : %6.1f" % xsDataDiffractionPlan.getAimedIOverSigmaAtHighestResolution().getValue())
if (xsDataDiffractionPlan.getAimedResolution() is not None):
self.addExecutiveSummaryLine("Aimed resolution : %6.1f [A]" % xsDataDiffractionPlan.getAimedResolution().getValue())
if (xsDataDiffractionPlan.getRequiredResolution() is not None):
self.addExecutiveSummaryLine("Required resolution : %6.1f [A]" % xsDataDiffractionPlan.getRequiredResolution().getValue())
if (xsDataDiffractionPlan.getAimedMultiplicity() is not None):
self.addExecutiveSummaryLine("Aimed multiplicity : %6.1f" % xsDataDiffractionPlan.getAimedMultiplicity().getValue())
if (xsDataDiffractionPlan.getRequiredMultiplicity() is not None):
self.addExecutiveSummaryLine("Required multiplicity : %6.1f" % xsDataDiffractionPlan.getRequiredMultiplicity().getValue())
if (xsDataDiffractionPlan.getForcedSpaceGroup() is not None):
self.addExecutiveSummaryLine("Forced space group : %6s" % xsDataDiffractionPlan.getForcedSpaceGroup().getValue())
if (xsDataDiffractionPlan.getMaxExposureTimePerDataCollection() is not None):
self.addExecutiveSummaryLine("Max exposure time per data collection : %6.1f [s]" % xsDataDiffractionPlan.getMaxExposureTimePerDataCollection().getValue())
self.addExecutiveSummarySeparator()
if (self.edPluginIndexing is not None):
self.appendExecutiveSummary(self.edPluginIndexing, "Indexing : ")
if (self.edPluginIntegration is not None):
self.appendExecutiveSummary(self.edPluginIntegration, "Integration : ")
if (self.edPluginStrategy is not None):
self.appendExecutiveSummary(self.edPluginStrategy, "Strategy : ")
class EDPluginControlCharacterisationv2_0(EDPluginControl):
"""
The Plugin that controls the whole characterisation: Indexing-Integration-(Kappa)Strategy
Indexing-Integration is the same as mxv1 characterisation.
KappaStrategy:
Preferred Strategy is given at the initial orientation, but if KAPPA features are enabled,
strategies are calculated to some alignments.
"""
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
#self.setXSDataInputClass( XSDataInputCharacterisation )
#self.setXSDataInputClass(EDList)
#self.strPluginIndexingName = "EDPluginControlIndexingv2_0"
self.strPluginIndexingName = "EDPluginControlIndexingv10"
self.edPluginIndexing = None
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
self.edPluginIntegration = None
self.xsDataResultCharacterisationv2_0 = None
self.xsDataResultCharacterisation = None
self.xsDataInputStrategy = None
self.setXSDataInputClass(XSDataInputCharacterisationv2_0)
EDFactoryPluginStatic.loadModule("XSDataMXv1")
import XSDataMXv1
self.setXSDataInputClass(XSDataMXv1.XSDataInputCharacterisation,
"mxv1InputCharacterisation")
EDFactoryPluginStatic.loadModule("XSDataMXv2")
import XSDataMXv2
self.setXSDataInputClass(XSDataMXv2.XSDataCollection,
"mxv2DataCollection")
def checkParameters(self):
"""
Checks the mandatory parameters
"""
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.checkParameters")
# Check for mxv1InputCharacterisation:
if self.hasDataInput():
if self.hasDataInput("mxv1InputCharacterisation"
) or self.hasDataInput("mxv2DataCollection"):
EDVerbose.WARNING(
"Ambiguous input! Both XSDataInputCharacterisatiov2_0 input, and mxv1InputCharacterisation or mxv2DataCollection input(s), are given"
)
self.setDataInput(
self.getDataInput().getMxv1InputCharacterisation().marshal(),
"mxv1InputCharacterisation")
self.setDataInput(
self.getDataInput().getMxv2DataCollection().marshal(),
"mxv2DataCollection")
# Check for mxv1InputCharacterisation
self.checkMandatoryParameters(
self.getDataInput("mxv1InputCharacterisation"),
"Data Input is None")
self.checkMandatoryParameters(
self.getDataInput("mxv1InputCharacterisation")
[0].getDataCollection(), "dataCollection")
self.checkMandatoryParameters(
self.getDataInput("mxv1InputCharacterisation")
[0].getDataCollection().getDiffractionPlan(), "diffractionPlan")
def preProcess(self, _edObject=None):
"""
Gets the Configuration Parameters, if found, overrides default parameters
"""
EDPluginControl.preProcess(self, _edObject)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.preProcess...")
self.edPluginIndexing = self.loadPlugin(self.strPluginIndexingName,
"Indexing")
self.edPluginIntegration = self.loadPlugin(
self.strPluginIntegrationName, "Integration")
self.edPluginStrategy = self.loadPlugin(self.strPluginStrategyName,
"Strategy")
if (self.edPluginIndexing is not None):
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.preProcess: " +
self.strPluginIndexingName + " Found... setting Data Input")
# create Data Input for indexing
xsDataInputStrategy = self.getDataInput(
"mxv1InputCharacterisation")[0]
xsDataCollection = xsDataInputStrategy.getDataCollection()
#xsDataSample = xsDataCollection.getSample()
xsDataSubWedgeList = xsDataCollection.getSubWedge()
xsDataExperimentalCondition = xsDataSubWedgeList[
0].getExperimentalCondition()
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(xsDataCollection)
xsDataIndexingInput.setExperimentalCondition(
xsDataExperimentalCondition)
xsDataDiffractionPlan = xsDataCollection.getDiffractionPlan()
xsDataStringForcedSpaceGroup = xsDataDiffractionPlan.getForcedSpaceGroup(
)
if (xsDataStringForcedSpaceGroup is not None):
xsDataCrystal = XSDataCrystal()
xsDataSpaceGroup = XSDataSpaceGroup()
xsDataSpaceGroup.setName(xsDataStringForcedSpaceGroup)
xsDataCrystal.setSpaceGroup(xsDataSpaceGroup)
xsDataIndexingInput.setCrystal(xsDataCrystal)
self.edPluginIndexing.setDataInput(xsDataIndexingInput)
# Populate characterisation object
self.xsDataResultCharacterisationv2_0 = XSDataResultCharacterisationv2_0(
)
self.xsDataResultCharacterisation = XSDataResultCharacterisation()
self.xsDataResultCharacterisationv2_0.setMxv1ResultCharacterisation(
self.xsDataResultCharacterisation)
self.xsDataResultCharacterisation.setDataCollection(
XSDataCollection.parseString(xsDataCollection.marshal()))
def process(self, _edObject=None):
EDPluginControl.process(self, _edObject)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.process")
self.connectProcess(self.edPluginIndexing.executeSynchronous)
self.edPluginIndexing.connectSUCCESS(
self.doIndexingToIntegrationTransition)
self.edPluginIndexing.connectFAILURE(self.doFailureActionIndexing)
self.edPluginIntegration.connectSUCCESS(
self.doIntegrationToStrategyTransition)
self.edPluginIntegration.connectFAILURE(
self.doFailureActionIntegration)
self.edPluginStrategy.connectFAILURE(self.doFailureActionStrategy)
self.edPluginStrategy.connectSUCCESS(self.doSuccessActionStrategy)
def postProcess(self, _edObject=None):
"""
"""
EDPluginControl.postProcess(self, _edObject)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.postProcess")
if (self.xsDataResultCharacterisationv2_0 is not None):
self.setDataOutput(self.xsDataResultCharacterisationv2_0)
def doIndexingToIntegrationTransition(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.doIndexingToIntegrationTransition"
)
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition"
)
xsDataIndexingResult = self.edPluginIndexing.getDataOutput()
self.xsDataResultCharacterisation.setIndexingResult(
xsDataIndexingResult)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInput = XSDataIntegrationInput()
xsDataIntegrationInput.setDataCollection(
self.xsDataResultCharacterisation.getDataCollection())
xsDataIntegrationInput.setExperimentalConditionRefined(
xsDataIndexingResult.getSelectedSolution(
).getExperimentalConditionRefined())
xsDataIntegrationInput.setSelectedIndexingSolution(
xsDataIndexingResult.getSelectedSolution())
self.edPluginIntegration.setDataInput(xsDataIntegrationInput)
self.edPluginIntegration.executeSynchronous()
def doIntegrationToStrategyTransition(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition"
)
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition"
)
xsDataIntegrationOutput = self.edPluginIntegration.getDataOutput()
self.xsDataResultCharacterisation.setIntegrationResult(
xsDataIntegrationOutput)
#EDVerbose.DEBUG( self.xsDataExperimentCharacterisation.marshal() )
from XSDataMXv1 import XSDataInputStrategy
xsDataInputStrategyOLD = XSDataInputStrategy()
xsDataSolutionSelected = self.xsDataResultCharacterisation.getIndexingResult(
).getSelectedSolution()
xsDataInputStrategyOLD.setCrystalRefined(
xsDataSolutionSelected.getCrystal())
xsDataInputStrategyOLD.setSample(
self.xsDataResultCharacterisation.getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = xsDataIntegrationOutput.getIntegrationSubWedgeResult(
)
xsDataInputStrategyOLD.setBestFileContentDat(
xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategyOLD.setBestFileContentPar(
xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategyOLD.setExperimentalCondition(
xsDataIntegrationSubWedgeResultList[0].
getExperimentalConditionRefined())
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategyOLD.addBestFileContentHKL(
xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategyOLD.setDiffractionPlan(
self.xsDataResultCharacterisation.getDataCollection(
).getDiffractionPlan())
xsDataInputStrategyOLD.setXdsBackgroundImage(
self.xsDataResultCharacterisation.getXdsBackgroundImage())
#print xsDataInputStrategy.marshal()
self.edPluginStrategy.setDataInput(xsDataInputStrategyOLD,
"mxv1InputStrategy")
if self.hasDataInput("mxv2DataCollection"):
self.edPluginStrategy.setDataInput(
self.getDataInput("mxv2DataCollection")[0],
"mxv2DataCollection")
self.edPluginStrategy.setDataInput(
self.xsDataResultCharacterisation.getIndexingResult(),
"mxv1IndexingResult")
# xsDataInputStrategy= EDList()
# xsDataInputStrategy.add(xsDataInputStrategyOLD)
# xsDataInputStrategy.add(self.getDataInput()[1])
# xsDataInputStrategy.add(self.xsDataResultCharacterisationv2_0.getIndexingResult())
# self.edPluginStrategy.setDataInput( xsDataInputStrategy )
self.edPluginStrategy.executeSynchronous()
def doFailureActionIndexing(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.doFailureActionIndexing")
self.retrieveFailureMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doFailureActionIndexing")
def doFailureActionIntegration(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.doFailureActionIntegration")
self.retrieveFailureMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doFailureActionIntegration")
def doFailureActionStrategy(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.doFailureActionStrategy")
self.retrieveFailureMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doFailureActionStrategy")
def doSuccessActionStrategy(self, _edPlugin):
"""
retrieve the potential warning messages
"""
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.doSuccessActionStrategy")
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doSuccessActionStrategy")
xsDataResultStrategy = self.edPluginStrategy.getDataOutput()
self.xsDataResultCharacterisation.setStrategyResult(
xsDataResultStrategy)
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.configure")
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration != None):
strPointlessOn = EDConfiguration.getStringParamValue(
pluginConfiguration, "POINTLESS")
if (strPointlessOn == None or strPointlessOn != "True"):
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def generateExecutiveSummary(self, _edPlugin):
"""
Generates a summary of the execution of the plugin.
"""
EDVerbose.DEBUG(
"EDPluginControlCharacterisationv2_0.generateExecutiveSummary")
self.addExecutiveSummaryLine("Summary of characterisation:")
self.addErrorWarningMessagesToExecutiveSummary(
"Characterisation failure! Error messages: ")
self.addExecutiveSummarySeparator()
xsDataInputStrategy = self.getDataInput("mxv1InputCharacterisation")[0]
xsDataCollection = xsDataInputStrategy.getDataCollection()
xsDataDiffractionPlan = xsDataCollection.getDiffractionPlan()
self.addExecutiveSummaryLine("Diffraction plan:")
if (xsDataDiffractionPlan.getComplexity() is not None):
self.addExecutiveSummaryLine(
"BEST complexity : %s" %
xsDataDiffractionPlan.getComplexity().getValue())
if (xsDataDiffractionPlan.getAimedCompleteness() is not None):
self.addExecutiveSummaryLine(
"Aimed completeness : %6.1f [%%]" %
(100.0 *
xsDataDiffractionPlan.getAimedCompleteness().getValue()))
if (xsDataDiffractionPlan.getRequiredCompleteness() is not None):
self.addExecutiveSummaryLine(
"Required completeness : %6.1f [%%]" %
(100.0 *
xsDataDiffractionPlan.getRequiredCompleteness().getValue()))
if (xsDataDiffractionPlan.getAimedIOverSigmaAtHighestResolution()
is not None):
self.addExecutiveSummaryLine(
"Aimed I/sigma at highest resolution : %6.1f" %
xsDataDiffractionPlan.getAimedIOverSigmaAtHighestResolution(
).getValue())
if (xsDataDiffractionPlan.getAimedResolution() is not None):
self.addExecutiveSummaryLine(
"Aimed resolution : %6.1f [A]" %
xsDataDiffractionPlan.getAimedResolution().getValue())
if (xsDataDiffractionPlan.getRequiredResolution() is not None):
self.addExecutiveSummaryLine(
"Required resolution : %6.1f [A]" %
xsDataDiffractionPlan.getRequiredResolution().getValue())
if (xsDataDiffractionPlan.getAimedMultiplicity() is not None):
self.addExecutiveSummaryLine(
"Aimed multiplicity : %6.1f" %
xsDataDiffractionPlan.getAimedMultiplicity().getValue())
if (xsDataDiffractionPlan.getRequiredMultiplicity() is not None):
self.addExecutiveSummaryLine(
"Required multiplicity : %6.1f" %
xsDataDiffractionPlan.getRequiredMultiplicity().getValue())
if (xsDataDiffractionPlan.getForcedSpaceGroup() is not None):
self.addExecutiveSummaryLine(
"Forced space group : %6s" %
xsDataDiffractionPlan.getForcedSpaceGroup().getValue())
if (xsDataDiffractionPlan.getMaxExposureTimePerDataCollection()
is not None):
self.addExecutiveSummaryLine(
"Max exposure time per data collection : %6.1f [s]" %
xsDataDiffractionPlan.getMaxExposureTimePerDataCollection(
).getValue())
self.addExecutiveSummarySeparator()
if (self.edPluginIndexing is not None):
self.appendExecutiveSummary(self.edPluginIndexing, "Indexing : ")
if (self.edPluginIntegration is not None):
self.appendExecutiveSummary(self.edPluginIntegration,
"Integration : ")
if (self.edPluginStrategy is not None):
self.appendExecutiveSummary(self.edPluginStrategy, "Strategy : ")
