import _TRACK as TRK
#%% --- USER PARAMETERS --- %%#
# Update/Visualize which saved values? #
UPDATE = {'INI': True, 'PRE': True, 'REC': True, 'SEG': True, 'TRK': True}
VISUAL = {'INI': False, 'PRE': False, 'REC': False, 'SEG': False, 'TRK': False}
# Load in which images? #
CODES = ['roi_Test Data_(230,320)_(64x64)_(f100-110)']
#%% INITIALIZATION %%#
for code in CODES:
#%% INITIALIZATION %%#
if (__name__ == '__main__'):
# Make sure all needed folders exist #
OP._MakeDir(OP.FOLD_APR)
OP._MakeDir(OP.FOLD_KER)
OP._MakeDir(OP.FOLD_IMG)
OP._MakeDir(OP.FOLD_SIM)
OP._MakeDir(OP.FOLD_TMP)
OP._MakeDir(OP.FOLD_EVL)
OP._MakeDir(OP.FOLD_MAT)
OP._MakeDir(OP.FOLD_TRUE)
OP._MakeCode(code)
# Initialize Microscope #
print('\n---------- Initialization ----------')
scope = INIT.RUN(code, update=UPDATE['INI'], visual=VISUAL['INI'])
#%% --- USER PARAMETERS --- %%#
## Processing parameters ##
UPDATE = True # Update rois? #
VISUAL = True # Visualize results? #
Frames = [0, 20
] # <(f, f)> Frame range, does not include end frame. Zero indexed #
Roi_cen = [64, 64] # <(px, px)> Center point of the ROI #
Roi_size = [
128, 128
] # <(px, px)> Size of the ROI. Keep equal! Else the phase mask simulates incorrectly (BUG) #
## Files for processing ##
DIR = path.dirname(path.abspath(__file__))
FOLD_EXP = DIR + '\\Experiment\\'
OP._MakeDir(FOLD_EXP) # Make the folder if it doesn't exist #
OP._MakeDir(OP.FOLD_IMG)
# If you want to specify files in the folder, uncomment the second line, else comment it out to grab everything in the folder #
files = glob.glob(FOLD_EXP + '*.tif')
files = ['test_bead.tif']
## Additional parameters ##
# Construct the x and y ranges for cropping #
rng_x = range(Roi_cen[0] - Roi_size[0] // 2, Roi_cen[0] + Roi_size[0] // 2)
rng_y = range(Roi_cen[1] - Roi_size[1] // 2, Roi_cen[1] + Roi_size[1] // 2)
# The footer for information about how these images were cropped #
footer = '_(%i,%i)_(%ix%i)_(f%i-%i)' % (*Roi_cen, *Roi_size, *Frames)
#%% LOAD AND CROP %%#