def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirSelector = ctk.ctkPathLineEdit()
self.inputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.inputDirSelector.settingKey = 'DicomPatcherInputDir'
parametersFormLayout.addRow("Input DICOM directory:", self.inputDirSelector)
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'DicomPatcherOutputDir'
parametersFormLayout.addRow("Output DICOM directory:", self.outputDirSelector)
self.generateMissingIdsCheckBox = qt.QCheckBox()
self.generateMissingIdsCheckBox.checked = True
self.generateMissingIdsCheckBox.setToolTip("If checked, then missing patient, study, series IDs are generated. It is assumed that all files in a directory belong to the same series. Fixes error caused by too aggressive anonymization or incorrect DICOM image converters.")
parametersFormLayout.addRow("Generate missing IDs", self.generateMissingIdsCheckBox)
self.generateImagePositionFromSliceThicknessCheckBox = qt.QCheckBox()
self.generateImagePositionFromSliceThicknessCheckBox.checked = True
self.generateImagePositionFromSliceThicknessCheckBox.setToolTip("If checked, then image position sequence is generated for multi-frame files that only have SliceThickness field. Fixes error in Dolphin 3D CBCT scanners.")
parametersFormLayout.addRow("Generate slice position for multi-frame volumes", self.generateImagePositionFromSliceThicknessCheckBox)
self.anonymizeDicomCheckBox = qt.QCheckBox()
self.anonymizeDicomCheckBox.checked = False
self.anonymizeDicomCheckBox.setToolTip("If checked, then some patient identifiable information will be removed from the patched DICOM files. There are many fields that can identify a patient, this function does not remove all of them.")
parametersFormLayout.addRow("Anonymize DICOM files", self.anonymizeDicomCheckBox)
#
# Patch Button
#
self.patchButton = qt.QPushButton("Patch")
self.patchButton.toolTip = "Fix and optionally anonymize DICOM files"
parametersFormLayout.addRow(self.patchButton)
# connections
self.patchButton.connect('clicked(bool)', self.onPatchButton)
self.statusLabel = qt.QPlainTextEdit()
self.statusLabel.setTextInteractionFlags(qt.Qt.TextSelectableByMouse)
parametersFormLayout.addRow(self.statusLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.logic = DicomPatcherLogic()
self.logic.logCallback = self.addLog
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirSelector = ctk.ctkPathLineEdit()
self.inputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.inputDirSelector.settingKey = 'Philips4dUsDicomPatcherInputDir'
parametersFormLayout.addRow("Input DICOM directory:", self.inputDirSelector)
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'Philips4dUsDicomPatcherOutputDir'
parametersFormLayout.addRow("Output DICOM directory:", self.outputDirSelector)
self.enableDicomOutputCheckBox = qt.QCheckBox()
self.enableDicomOutputCheckBox.checked = True
self.enableDicomOutputCheckBox.setToolTip("If checked, patched 4D US DICOM files will be saved as DICOM files")
parametersFormLayout.addRow("Export to DICOM files", self.enableDicomOutputCheckBox)
self.anonymizeDicomCheckBox = qt.QCheckBox()
self.anonymizeDicomCheckBox.checked = False
self.anonymizeDicomCheckBox.setToolTip("If checked, then patient identifiable information will be removed from the patched DICOM files")
parametersFormLayout.addRow(" Anonymize DICOM files", self.anonymizeDicomCheckBox)
self.enableNrrdOutputCheckBox = qt.QCheckBox()
self.enableNrrdOutputCheckBox.checked = False
self.enableNrrdOutputCheckBox.setToolTip("If checked, 4D US DICOM files will be saved as NRRD files")
parametersFormLayout.addRow("Export to NRRD files", self.enableNrrdOutputCheckBox)
#
# Patch Button
#
self.patchButton = qt.QPushButton("Patch")
self.patchButton.toolTip = "Fix and optionally anonymize DICOM files"
parametersFormLayout.addRow(self.patchButton)
# connections
self.patchButton.connect('clicked(bool)', self.onPatchButton)
self.statusLabel = qt.QPlainTextEdit()
self.statusLabel.setTextInteractionFlags(qt.Qt.TextSelectableByMouse)
parametersFormLayout.addRow(self.statusLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.logic = Philips4dUsDicomPatcherLogic()
self.logic.logCallback = self.addLog
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# Path
#
self.dirPath = ctk.ctkPathLineEdit()
self.dirPath.currentPath = "/tmp"
parametersFormLayout.addRow(self.dirPath)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
# Instantiate and connect widgets ...
# Reload and Test area
if self.developerMode:
# section
reloadCollapsibleButton = ctk.ctkCollapsibleButton()
reloadCollapsibleButton.text = "Reload && Test"
self.layout.addWidget(reloadCollapsibleButton)
reloadFormLayout = qt.QFormLayout(reloadCollapsibleButton)
# reload button
self.reloadButton = qt.QPushButton("Reload")
self.reloadButton.toolTip = "Reload this module."
self.reloadButton.name = "PyDevRemoteDebug Reload"
reloadFormLayout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked()', self.onReload)
# Settings Area
self.settingsCollapsibleButton = ctk.ctkCollapsibleButton()
self.settingsCollapsibleButton.text = "Settings"
self.settingsCollapsibleButton.collapsed = True
self.layout.addWidget(self.settingsCollapsibleButton)
settingsFormLayout = qt.QFormLayout(self.settingsCollapsibleButton)
# pydevd.py path selector
pydevdDir=self.getPydevdDir()
self.pydevdDirSelector = ctk.ctkPathLineEdit()
self.pydevdDirSelector.setCurrentPath(pydevdDir)
self.pydevdDirSelector.filters=self.pydevdDirSelector.Dirs
self.pydevdDirSelector.setMaximumWidth(300)
self.pydevdDirSelector.setToolTip("Set the path to pydevd.py. It is in the eclipse folder within plugins/...pydev.../pysrc.")
settingsFormLayout.addRow("Path to pydevd.py: ", self.pydevdDirSelector)
if not self.isValidPydevdDir(pydevdDir):
self.settingsCollapsibleButton.collapsed = False
# Connection Area
connectionCollapsibleButton = ctk.ctkCollapsibleButton()
connectionCollapsibleButton.text = "Connection"
connectionCollapsibleButton.collapsed = False
self.layout.addWidget(connectionCollapsibleButton)
connectionFormLayout = qt.QFormLayout(connectionCollapsibleButton)
# Connect Button
self.connectButton = qt.QPushButton("Connect")
self.connectButton.toolTip = "Connect to PyDev remote debugger"
self.connectButton.setAutoFillBackground(True)
self.connectButton.setStyleSheet("background-color: rgb(150, 255, 150); color: rgb(0, 0, 0)");
connectionFormLayout.addRow(self.connectButton)
# Connections
self.connectButton.connect('clicked(bool)', self.onConnect)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# Configuration Selection
#
self.configPathEdit = ctk.ctkPathLineEdit()
self.configPathEdit.toolTip = "A json file in the format described in the help tab above."
parametersFormLayout.addRow('Config File', self.configPathEdit)
self.targetDirectoryButton = ctk.ctkDirectoryButton()
self.targetDirectoryButton.directory = slicer.app.temporaryPath
self.targetDirectoryButton.toolTip = "Where you want the customized Slicer application to be created. By default it is the current Slicer temporary directory."
parametersFormLayout.addRow('Target Directory',
self.targetDirectoryButton)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Generate")
self.applyButton.toolTip = "Generate the Custom Slicer."
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
# Possible use for error messages
self.message = qt.QErrorMessage()
self.message.setWindowTitle("CustomSlicerGenerator")
# Add vertical spacer
self.layout.addStretch(1)
self.logic = CustomSlicerGeneratorLogic()
# QPushButton used for signal connection between widget and logic
self.myQObject = qt.QPushButton()
self.myQObject.connect('clicked(bool)', self.doneGenerating)
def __init__(self, parent):
self.vLayout = qt.QVBoxLayout(parent)
self.formLayout = qt.QFormLayout()
self.componentName = qt.QLineEdit()
self.formLayout.addRow("Name:", self.componentName)
self.componentType = qt.QComboBox()
self.formLayout.addRow("Type:", self.componentType)
self.destination = ctk.ctkPathLineEdit()
self.destination.filters = ctk.ctkPathLineEdit.Dirs
self.formLayout.addRow("Destination:", self.destination)
self.vLayout.addLayout(self.formLayout)
self.vLayout.addStretch(1)
self.buttonBox = qt.QDialogButtonBox()
self.buttonBox.setStandardButtons(qt.QDialogButtonBox.Ok
| qt.QDialogButtonBox.Cancel)
self.vLayout.addWidget(self.buttonBox)
def __init__(self, parent):
self.vLayout = qt.QVBoxLayout(parent)
self.formLayout = qt.QFormLayout()
self.componentName = qt.QLineEdit()
self.formLayout.addRow("Name:", self.componentName)
self.componentType = qt.QComboBox()
self.formLayout.addRow("Type:", self.componentType)
self.destination = ctk.ctkPathLineEdit()
self.destination.filters = ctk.ctkPathLineEdit.Dirs
self.formLayout.addRow("Destination:", self.destination)
self.vLayout.addLayout(self.formLayout)
self.vLayout.addStretch(1)
self.buttonBox = qt.QDialogButtonBox()
self.buttonBox.setStandardButtons(qt.QDialogButtonBox.Ok |
qt.QDialogButtonBox.Cancel)
self.vLayout.addWidget(self.buttonBox)
def setup(self):
# Instantiate and connect widgets ...
# Collapsible button
sampleCollapsibleButton = ctk.ctkCollapsibleButton()
sampleCollapsibleButton.text = "Directory to Monitor"
self.layout.addWidget(sampleCollapsibleButton)
# Layout within the sample collapsible button
sampleFormLayout = qt.QFormLayout(sampleCollapsibleButton)
#directory selector
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'BlenderMonitorDir'
sampleFormLayout.addRow("Blender tmp directory:",
self.outputDirSelector)
if not self.outputDirSelector.currentPath:
self_dir = os.path.dirname(os.path.abspath(__file__))
defaultOutputPath = os.path.join(self_dir, "tmp")
if not os.path.exists(defaultOutputPath):
print(defaultOutputPath)
defaultOutputPath = slicer.app.defaultScenePath
self.outputDirSelector.setCurrentPath(defaultOutputPath)
# Play button
playButton = qt.QPushButton("Start")
playButton.toolTip = "Start Monitoring Directory."
playButton.checkable = True
sampleFormLayout.addRow(playButton)
playButton.connect('toggled(bool)', self.onPlayButtonToggled)
self.playButton = playButton
#Report Window
self.text_report = qt.QTextEdit()
self.text_report.setText('Report file changes here')
sampleFormLayout.addRow('Dir Status:', self.text_report)
def setup(self):
# Do not show reload&test in developer mode, as debugger is mostly used by developers
# but they are not interested in debugging this module.
# ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
# Settings Area
self.settingsCollapsibleButton = ctk.ctkCollapsibleButton()
self.settingsCollapsibleButton.text = "Settings"
self.settingsCollapsibleButton.collapsed = True
self.layout.addWidget(self.settingsCollapsibleButton)
settingsFormLayout = qt.QFormLayout(self.settingsCollapsibleButton)
# Debugger selector
self.debuggerSelector = qt.QComboBox()
self.debuggerSelector.toolTip = "Chose debugger server."
debugger = self.logic.getDebugger()
self.debuggerSelector.addItem("Eclipse")
self.debuggerSelector.addItem("PyCharm")
if debugger == 'Eclipse':
self.debuggerSelector.currentIndex = 0
elif debugger == 'PyCharm':
self.debuggerSelector.currentIndex = 1
else:
self.debuggerSelector.currentIndex = -1
settingsFormLayout.addRow("Debugger: ", self.debuggerSelector)
self.debuggerSelector.connect('currentIndexChanged(int)',
self.onDebuggerSelected)
# pydevd.py path selector
pydevdDir = self.logic.getEclipsePydevdDir(
enableAutoDetect=(debugger == 'Eclipse'))
self.pydevdDirSelector = ctk.ctkPathLineEdit()
self.pydevdDirSelector.setCurrentPath(pydevdDir)
self.pydevdDirSelector.filters = self.pydevdDirSelector.Dirs
self.pydevdDirSelector.setMaximumWidth(300)
self.pydevdDirSelector.setToolTip(
"Set the path to pydevd.py. It is in the eclipse folder within plugins/...pydev.../pysrc."
)
settingsFormLayout.addRow("Eclipse pydevd.py directory:",
self.pydevdDirSelector)
# pycharm-debug.egg path selector
pyCharmDebugEggPathSelector = self.logic.getPyCharmDebugEggPath(
enableAutoDetect=(debugger == 'PyCharm'))
self.pyCharmDebugEggPathSelector = ctk.ctkPathLineEdit()
self.pyCharmDebugEggPathSelector.setCurrentPath(
pyCharmDebugEggPathSelector)
self.pyCharmDebugEggPathSelector.nameFilters = ['pycharm-debug.egg']
self.pyCharmDebugEggPathSelector.setMaximumWidth(300)
self.pyCharmDebugEggPathSelector.setToolTip(
"Set the path to pycharm-debug.egg . It is in the .../PyCharm/debug-eggs folder."
)
settingsFormLayout.addRow("PyCharm pycharm-debug.egg path:",
self.pyCharmDebugEggPathSelector)
if not self.isCurrentSettingValid():
self.settingsCollapsibleButton.collapsed = False
# Connection Area
connectionCollapsibleButton = ctk.ctkCollapsibleButton()
connectionCollapsibleButton.text = "Connection"
connectionCollapsibleButton.collapsed = False
self.layout.addWidget(connectionCollapsibleButton)
connectionFormLayout = qt.QFormLayout(connectionCollapsibleButton)
# Connect Button
self.connectButton = qt.QPushButton("Connect to debug server")
self.connectButton.toolTip = "Connect to remote debug server"
self.connectButton.setAutoFillBackground(True)
self.connectButton.setStyleSheet(
"background-color: rgb(150, 255, 150); color: rgb(0, 0, 0)")
connectionFormLayout.addRow(self.connectButton)
# Auto-connect button (only show after a successful connection to make sure
# Slicer does not hang on startup due to failed attempt to connect to debugger)
self.autoConnectCheckBox = qt.QCheckBox()
self.autoConnectCheckBox.visible = False
self.autoConnectCheckBox.checked = self.logic.getDebuggerAutoConnect()
self.autoConnectCheckBox.setToolTip(
"If checked, Slicer will attempt to connect to the remote debugger on startup."
)
self.autoConnectCheckBoxLabel = qt.QLabel(
"Auto-connect on next application startup:")
self.autoConnectCheckBoxLabel.visible = False
connectionFormLayout.addRow(self.autoConnectCheckBoxLabel,
self.autoConnectCheckBox)
if self.logic.isConnected():
# already connected
self.onConnectionComplete(True)
# Connections
self.connectButton.connect('clicked(bool)', self.onConnect)
self.autoConnectCheckBox.connect('toggled(bool)',
self.onAutoConnectChanged)
# Add vertical spacer
self.layout.addStretch(1)
self.onDebuggerSelected()
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirSelector = ctk.ctkPathLineEdit()
self.inputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.inputDirSelector.settingKey = 'Philips4dUsDicomPatcherInputDir'
parametersFormLayout.addRow("Input DICOM directory:",
self.inputDirSelector)
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'Philips4dUsDicomPatcherOutputDir'
parametersFormLayout.addRow("Output DICOM directory:",
self.outputDirSelector)
self.enableDicomOutputCheckBox = qt.QCheckBox()
self.enableDicomOutputCheckBox.checked = True
self.enableDicomOutputCheckBox.setToolTip(
"If checked, patched 4D US DICOM files will be saved as DICOM files"
)
parametersFormLayout.addRow("Export to DICOM files",
self.enableDicomOutputCheckBox)
self.anonymizeDicomCheckBox = qt.QCheckBox()
self.anonymizeDicomCheckBox.checked = False
self.anonymizeDicomCheckBox.setToolTip(
"If checked, then patient identifiable information will be removed from the patched DICOM files"
)
parametersFormLayout.addRow(" Anonymize DICOM files",
self.anonymizeDicomCheckBox)
self.enableNrrdOutputCheckBox = qt.QCheckBox()
self.enableNrrdOutputCheckBox.checked = False
self.enableNrrdOutputCheckBox.setToolTip(
"If checked, 4D US DICOM files will be saved as NRRD files")
parametersFormLayout.addRow("Export to NRRD files",
self.enableNrrdOutputCheckBox)
#
# Patch Button
#
self.patchButton = qt.QPushButton("Patch")
self.patchButton.toolTip = "Fix and optionally anonymize DICOM files"
parametersFormLayout.addRow(self.patchButton)
# connections
self.patchButton.connect('clicked(bool)', self.onPatchButton)
self.statusLabel = qt.QPlainTextEdit()
self.statusLabel.setTextInteractionFlags(qt.Qt.TextSelectableByMouse)
parametersFormLayout.addRow(self.statusLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.logic = Philips4dUsDicomPatcherLogic()
self.logic.logCallback = self.addLog
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirSelector = ctk.ctkPathLineEdit()
self.inputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.inputDirSelector.settingKey = 'DICOMPatcherInputDir'
parametersFormLayout.addRow("Input DICOM directory:", self.inputDirSelector)
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'DICOMPatcherOutputDir'
parametersFormLayout.addRow("Output DICOM directory:", self.outputDirSelector)
self.normalizeFileNamesCheckBox = qt.QCheckBox()
self.normalizeFileNamesCheckBox.checked = True
self.normalizeFileNamesCheckBox.setToolTip("Replace file and folder names with automatically generated names."
" Fixes errors caused by file path containins special characters or being too long.")
parametersFormLayout.addRow("Normalize file names", self.normalizeFileNamesCheckBox)
self.forceSamePatientNameIdInEachDirectoryCheckBox = qt.QCheckBox()
self.forceSamePatientNameIdInEachDirectoryCheckBox.checked = False
self.forceSamePatientNameIdInEachDirectoryCheckBox.setToolTip("Generate patient name and ID from the first file in a directory"
" and force all other files in the same directory to have the same patient name and ID."
" Enable this option if a separate patient directory is created for each patched file.")
parametersFormLayout.addRow("Force same patient name and ID in each directory", self.forceSamePatientNameIdInEachDirectoryCheckBox)
self.generateMissingIdsCheckBox = qt.QCheckBox()
self.generateMissingIdsCheckBox.checked = True
self.generateMissingIdsCheckBox.setToolTip("Generate missing patient, study, series IDs. It is assumed that"
" all files in a directory belong to the same series. Fixes error caused by too aggressive anonymization"
" or incorrect DICOM image converters.")
parametersFormLayout.addRow("Generate missing patient/study/series IDs", self.generateMissingIdsCheckBox)
self.generateImagePositionFromSliceThicknessCheckBox = qt.QCheckBox()
self.generateImagePositionFromSliceThicknessCheckBox.checked = True
self.generateImagePositionFromSliceThicknessCheckBox.setToolTip("Generate 'image position sequence' for"
" multi-frame files that only have 'SliceThickness' field. Fixes error in Dolphin 3D CBCT scanners.")
parametersFormLayout.addRow("Generate slice position for multi-frame volumes", self.generateImagePositionFromSliceThicknessCheckBox)
self.anonymizeDicomCheckBox = qt.QCheckBox()
self.anonymizeDicomCheckBox.checked = False
self.anonymizeDicomCheckBox.setToolTip("If checked, then some patient identifiable information will be removed"
" from the patched DICOM files. There are many fields that can identify a patient, this function does not remove all of them.")
parametersFormLayout.addRow("Partially anonymize", self.anonymizeDicomCheckBox)
#
# Patch Button
#
self.patchButton = qt.QPushButton("Patch")
self.patchButton.toolTip = "Fix DICOM files in input directory and write them to output directory"
parametersFormLayout.addRow(self.patchButton)
#
# Import Button
#
self.importButton = qt.QPushButton("Import")
self.importButton.toolTip = "Import DICOM files in output directory into Slicer DICOM database"
parametersFormLayout.addRow(self.importButton)
#
# Switch to DICOM module Button
#
self.switchToDICOMModuleButton = qt.QPushButton("Go to DICOM module")
self.switchToDICOMModuleButton.toolTip = "Open DICOM module where imported data can be loaded into the scene"
parametersFormLayout.addRow(self.switchToDICOMModuleButton)
# connections
self.patchButton.connect('clicked(bool)', self.onPatchButton)
self.importButton.connect('clicked(bool)', self.onImportButton)
self.switchToDICOMModuleButton.connect('clicked(bool)', self.onSwitchToDICOMModuleButton)
self.statusLabel = qt.QPlainTextEdit()
self.statusLabel.setTextInteractionFlags(qt.Qt.TextSelectableByMouse)
parametersFormLayout.addRow(self.statusLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.logic = DICOMPatcherLogic()
self.logic.logCallback = self.addLog
def setup(self):
#
# Input
#
self.inputCollapsibleButton = ctk.ctkCollapsibleButton()
self.inputCollapsibleButton.text = "Input"
self.layout.addWidget(self.inputCollapsibleButton)
# Layout within the input collapsible button
self.inputFormLayout = qt.QFormLayout(self.inputCollapsibleButton)
import platform
self.inputJsonFn = ctk.ctkPathLineEdit()
self.inputFormLayout.addRow("Input Json:", self.inputJsonFn)
#self.inputJsonFn.setCurrentPath('input.json')
if platform.system() == 'Linux':
self.inputJsonFn.setCurrentPath(
'/home/mrusu/Projects/RadPathFusion/prostate/4_histology/')
if platform.system() == 'Windows':
self.inputJsonFn.setCurrentPath(
'C:/Projects/rad-path-fusion/prostate_RP/3_histology/')
#self.inputJsonFn.setMaximumWidth(425)
self.inputJsonFn.addCurrentPathToHistory()
#
# input fixed volume selector
#
self.inputVolumeSelector = slicer.qMRMLNodeComboBox()
self.inputVolumeSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.inputVolumeSelector.selectNodeUponCreation = True
self.inputVolumeSelector.addEnabled = False
self.inputVolumeSelector.renameEnabled = True
self.inputVolumeSelector.removeEnabled = True
self.inputVolumeSelector.noneEnabled = True
self.inputVolumeSelector.showHidden = False
self.inputVolumeSelector.showChildNodeTypes = False
self.inputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.inputFormLayout.addRow("Fixed Volume: ", self.inputVolumeSelector)
#
# input fixed volume selector
#
self.inputMaskSelector = slicer.qMRMLNodeComboBox()
self.inputMaskSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.inputMaskSelector.selectNodeUponCreation = True
self.inputMaskSelector.addEnabled = False
self.inputMaskSelector.renameEnabled = True
self.inputMaskSelector.removeEnabled = True
self.inputMaskSelector.noneEnabled = True
self.inputMaskSelector.showHidden = False
self.inputMaskSelector.showChildNodeTypes = False
self.inputMaskSelector.setMRMLScene(slicer.mrmlScene)
self.inputFormLayout.addRow("Fixed Mask: ", self.inputMaskSelector)
#
#Output
#
self.outputCollapsibleButton = ctk.ctkCollapsibleButton()
self.outputCollapsibleButton.text = "Output"
self.layout.addWidget(self.outputCollapsibleButton)
# Layout within the output collapsible button
self.outputFormLayout = qt.QFormLayout(self.outputCollapsibleButton)
"""
self.outputJsonFn = ctk.ctkPathLineEdit()
self.outputFormLayout.addRow("Output Json:", self.outputJsonFn)
if platform.system() == 'Linux':
self.outputJsonFn.setCurrentPath('/home/mrusu/Projects/RadPathFusion/prostate/4_histology/')
if platform.system() == 'Windows':
self.outputJsonFn.setCurrentPath( 'C:/Projects/rad-path-fusion/prostate_RP/3_histology/')
#self.outputJsonFn.setMaximumWidth(400)
"""
#
# output volume selector
#
self.outputVolumeSelector = slicer.qMRMLNodeComboBox()
self.outputVolumeSelector.nodeTypes = ["vtkMRMLVectorVolumeNode"]
self.outputVolumeSelector.selectNodeUponCreation = True
self.outputVolumeSelector.addEnabled = True
self.outputVolumeSelector.renameEnabled = True
self.outputVolumeSelector.removeEnabled = True
self.outputVolumeSelector.noneEnabled = True
self.outputVolumeSelector.showHidden = False
self.outputVolumeSelector.showChildNodeTypes = False
self.outputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.outputFormLayout.addRow("Output Volume: ",
self.outputVolumeSelector)
#self.outputVolumeSelector.setMaximumWidth(400)
#
# output mask volume selector
#
self.outputMaskVolumeSelector = slicer.qMRMLNodeComboBox()
self.outputMaskVolumeSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.outputMaskVolumeSelector.selectNodeUponCreation = True
self.outputMaskVolumeSelector.addEnabled = True
self.outputMaskVolumeSelector.renameEnabled = True
self.outputMaskVolumeSelector.removeEnabled = True
self.outputMaskVolumeSelector.noneEnabled = True
self.outputMaskVolumeSelector.showHidden = False
self.outputMaskVolumeSelector.showChildNodeTypes = False
self.outputMaskVolumeSelector.setMRMLScene(slicer.mrmlScene)
# maskIDselector
self.maskIdSelector = qt.QComboBox()
self.populateMaskId()
self.outputFormLayout.addRow("Output Mask: ",
self.outputMaskVolumeSelector)
self.outputFormLayout.addRow("Mask ID", self.maskIdSelector)
#self.outputMaskVolumeSelector.setMaximumWidth(400)
#
# Status and Progress
#
statusLabel = qt.QLabel("Status: ")
self.currentStatusLabel = qt.QLabel("Idle")
hlayout = qt.QHBoxLayout()
hlayout.addStretch(1)
hlayout.addWidget(statusLabel)
hlayout.addWidget(self.currentStatusLabel)
self.layout.addLayout(hlayout)
self.progress = qt.QProgressBar()
self.progress.setRange(0, 0)
#self.progress.setValue(0)
self.layout.addWidget(self.progress)
self.progress.hide()
#Load Input
self.loadJsonButton = qt.QPushButton("Load Json")
self.loadJsonButton.toolTip = "Load the json file."
self.loadJsonButton.enabled = True
# Save Output Json
self.saveJsonButton = qt.QPushButton("Save Json")
self.saveJsonButton.toolTip = "Save the json file."
self.saveJsonButton.enabled = False
# ReconstructVolume
self.refineVolumeButton = qt.QPushButton("Refine Volume")
self.refineVolumeButton.toolTip = "Refine."
self.refineVolumeButton.enabled = True
# RegisterVolume
self.registerVolumeButton = qt.QPushButton("Register")
self.registerVolumeButton.toolTip = "Register"
self.registerVolumeButton.enabled = True
# LoadVolume
self.loadVolumeButton = qt.QPushButton("Load Volume")
self.loadVolumeButton.toolTip = "Load Volume."
self.loadVolumeButton.enabled = True
# LoadMask
self.loadMaskVolumeButton = qt.QPushButton("Load Mask")
self.loadMaskVolumeButton.toolTip = "Load a Mask"
self.loadMaskVolumeButton.enabled = True
# Clear
self.clearAllVolumeButton = qt.QPushButton("Clear ALL")
self.clearAllVolumeButton.toolTip = "Clear"
self.clearAllVolumeButton.enabled = False
hlayout = qt.QHBoxLayout()
hlayout.addWidget(self.loadJsonButton)
hlayout.addWidget(self.refineVolumeButton)
hlayout.addWidget(self.registerVolumeButton)
hlayout.addWidget(self.loadVolumeButton)
hlayout.addWidget(self.loadMaskVolumeButton)
hlayout.addWidget(self.clearAllVolumeButton)
hlayout.addStretch(1)
hlayout.addWidget(self.saveJsonButton)
self.layout.addLayout(hlayout)
self.loadJsonButton.connect('clicked(bool)', self.onLoadJson)
self.saveJsonButton.connect('clicked(bool)', self.onSaveJson)
self.refineVolumeButton.connect('clicked(bool)', self.onRefineVolume)
self.registerVolumeButton.connect('clicked(bool)',
self.onRegisterVolume)
self.loadVolumeButton.connect('clicked(bool)', self.onLoadVolume)
self.loadMaskVolumeButton.connect('clicked(bool)',
self.onLoadMaskVolume)
self.clearAllVolumeButton.connect('clicked(bool)', self.onClearAll)
self.maskIdSelector.connect('currentIndexChanged(int)',
self.onMaskIDSelect)
#
# advanced
#
self.advancedCollapsibleButton = ctk.ctkCollapsibleButton()
self.advancedCollapsibleButton.text = "Advanced"
self.layout.addWidget(self.advancedCollapsibleButton)
self.advancedCollapsibleButton.enabled = False
self.advancedFormLayout = qt.QFormLayout(
self.advancedCollapsibleButton)
# Add vertical spacer
self.layout.addStretch(1)
def populate_advanced_tab(self):
jsonUIInfo = self.logic.getJsonInfo4UI(self.inputJsonFn.currentPath)
self.advancedOptions = []
for el in jsonUIInfo:
#print(el)
self.idxSlide = ctk.ctkDoubleSpinBox()
self.advancedFormLayout.addRow("Idx:", self.idxSlide)
self.idxSlide.setValue(int(el[1]))
self.idxSlide.setEnabled(False)
self.rgbPath = ctk.ctkPathLineEdit()
self.advancedFormLayout.addRow(" Rgb Image:", self.rgbPath)
self.rgbPath.setCurrentPath(el[2])
self.doFlip = ctk.ctkCheckBox()
self.advancedFormLayout.addRow(" Flip:", self.doFlip)
if (not el[4] == None) and el[4] == 1:
self.doFlip.setChecked(True)
else:
self.doFlip.setChecked(False)
self.doRotate = ctk.ctkDoubleSpinBox()
self.advancedFormLayout.addRow(" Rotation angle:",
self.doRotate)
self.doRotate.minimum = 0.0
self.doRotate.maximum = 360.0
self.doRotate.singleStep = 90.0
if el[5]:
self.doRotate.setValue(int(el[5]))
for maskEl in el[3]:
print(maskEl)
self.idxMask2 = ctk.ctkDoubleSpinBox()
self.advancedFormLayout.addRow(" Mask Idx:",
self.idxMask2)
self.idxMask2.setValue(int(maskEl[0]))
self.idxMask2.setEnabled(False)
self.maskPath = ctk.ctkPathLineEdit()
self.advancedFormLayout.addRow(" Mask Image:",
self.maskPath)
self.maskPath.setCurrentPath(maskEl[1])
self.idxMask2.connect(
'valueChanged(double)',
lambda value, idxSlice=el[0], idxMask=int(maskEl[
0]): self.onMaskIdxChange(value, idxSlice, idxMask))
self.maskPath.connect(
'currentPathChanged(QString)',
lambda value, idxSlice=el[0], idxMask=int(maskEl[
0]): self.onMaskFileChange(value, idxSlice, idxMask))
Separador = qt.QFrame()
Separador.setFrameShape(qt.QFrame.HLine)
Separador.setLineWidth(1)
self.advancedFormLayout.addRow(Separador)
self.idxSlide.connect(
'valueChanged(double)',
lambda value, idx=el[0]: self.onSliceIdxChange(value, idx))
self.rgbPath.connect('currentPathChanged(QString)',
lambda value, idx=el[0]: self.
onSliceJsonFileChange(value, idx))
self.doFlip.connect(
'stateChanged(int)',
lambda value, idx=el[0]: self.onSliceFlipChange(value, idx))
self.doRotate.connect('valueChanged(double)',
lambda value, idx=el[0]: self.
onSliceDoRotateChange(value, idx))
advancedUIEl = [
el[0], self.idxSlide, self.rgbPath, self.doRotate,
self.doRotate
]
self.advancedOptions.append(advancedUIEl)
def setup(self):
# Do not show reload&test in developer mode, as debugger is mostly used by developers
# but they are not interested in debugging this module.
# ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
# Settings Area
self.settingsCollapsibleButton = ctk.ctkCollapsibleButton()
self.settingsCollapsibleButton.text = "Settings"
self.settingsCollapsibleButton.collapsed = True
self.layout.addWidget(self.settingsCollapsibleButton)
settingsFormLayout = qt.QFormLayout(self.settingsCollapsibleButton)
# Debugger selector
self.debuggerSelector = qt.QComboBox()
self.debuggerSelector.toolTip = "Chose debugger server."
debugger = self.logic.getDebugger()
self.debuggerSelector.addItem("Eclipse")
self.debuggerSelector.addItem("PyCharm")
if debugger=='Eclipse':
self.debuggerSelector.currentIndex = 0
elif debugger=='PyCharm':
self.debuggerSelector.currentIndex = 1
else:
self.debuggerSelector.currentIndex = -1
settingsFormLayout.addRow("Debugger: ", self.debuggerSelector)
self.debuggerSelector.connect('currentIndexChanged(int)', self.onDebuggerSelected)
# pydevd.py path selector
pydevdDir=self.logic.getEclipsePydevdDir(enableAutoDetect=(debugger=='Eclipse'))
self.pydevdDirSelector = ctk.ctkPathLineEdit()
self.pydevdDirSelector.setCurrentPath(pydevdDir)
self.pydevdDirSelector.filters=self.pydevdDirSelector.Dirs
self.pydevdDirSelector.setMaximumWidth(300)
self.pydevdDirSelector.setToolTip("Set the path to pydevd.py. It is in the eclipse folder within plugins/...pydev.../pysrc.")
settingsFormLayout.addRow("Eclipse pydevd.py directory:", self.pydevdDirSelector)
# pycharm-debug.egg path selector
pyCharmDebugEggPathSelector=self.logic.getPyCharmDebugEggPath(enableAutoDetect=(debugger=='PyCharm'))
self.pyCharmDebugEggPathSelector = ctk.ctkPathLineEdit()
self.pyCharmDebugEggPathSelector.setCurrentPath(pyCharmDebugEggPathSelector)
self.pyCharmDebugEggPathSelector.nameFilters=['pycharm-debug.egg']
self.pyCharmDebugEggPathSelector.setMaximumWidth(300)
self.pyCharmDebugEggPathSelector.setToolTip("Set the path to pycharm-debug.egg . It is in the .../PyCharm/debug-eggs folder.")
settingsFormLayout.addRow("PyCharm pycharm-debug.egg path:", self.pyCharmDebugEggPathSelector)
if not self.isCurrentSettingValid():
self.settingsCollapsibleButton.collapsed = False
# Connection Area
connectionCollapsibleButton = ctk.ctkCollapsibleButton()
connectionCollapsibleButton.text = "Connection"
connectionCollapsibleButton.collapsed = False
self.layout.addWidget(connectionCollapsibleButton)
connectionFormLayout = qt.QFormLayout(connectionCollapsibleButton)
# Connect Button
self.connectButton = qt.QPushButton("Connect to debug server")
self.connectButton.toolTip = "Connect to remote debug server"
self.connectButton.setAutoFillBackground(True)
self.connectButton.setStyleSheet("background-color: rgb(150, 255, 150); color: rgb(0, 0, 0)")
connectionFormLayout.addRow(self.connectButton)
# Auto-connect button (only show after a successful connection to make sure
# Slicer does not hang on startup due to failed attempt to connect to debugger)
self.autoConnectCheckBox = qt.QCheckBox()
self.autoConnectCheckBox.visible = False
self.autoConnectCheckBox.checked = self.logic.getDebuggerAutoConnect()
self.autoConnectCheckBox.setToolTip("If checked, Slicer will attempt to connect to the remote debugger on startup.")
self.autoConnectCheckBoxLabel = qt.QLabel("Auto-connect on next application startup:")
self.autoConnectCheckBoxLabel.visible = False
connectionFormLayout.addRow(self.autoConnectCheckBoxLabel, self.autoConnectCheckBox)
if self.logic.isConnected():
# already connected
self.onConnectionComplete(True)
# Connections
self.connectButton.connect('clicked(bool)', self.onConnect)
self.autoConnectCheckBox.connect('toggled(bool)', self.onAutoConnectChanged)
# Add vertical spacer
self.layout.addStretch(1)
self.onDebuggerSelected()
def setup(self):
#
# Configuration
#
self.configCollapsibleButton = ctk.ctkCollapsibleButton()
self.configCollapsibleButton.text = "Configuration"
self.layout.addWidget(self.configCollapsibleButton)
# Layout within the configuration collapsible button
self.configFormLayout = qt.QFormLayout(self.configCollapsibleButton)
import platform
self.elastixPath = ctk.ctkPathLineEdit()
self.elastixPath.filters = ctk.ctkPathLineEdit.Dirs
self.configFormLayout.addRow("Elastix Executable Path:",
self.elastixPath)
if platform.system() == 'Linux':
self.elastixPath.setCurrentPath(
'/home/mrusu/Programs/elastix-4.9.0-linux/bin/')
if platform.system() == 'Windows':
self.elastixPath.setCurrentPath("C:/Programs/elastix-4.9.0-win64/")
self.slicerElastixPath = ctk.ctkPathLineEdit()
self.slicerElastixPath.filters = ctk.ctkPathLineEdit.Dirs
self.configFormLayout.addRow("Slicer Elastix Path:",
self.slicerElastixPath)
if platform.system() == 'Linux':
self.slicerElastixPath.setCurrentPath(
'/home/mrusu/Programs/SlicerElastix/Elastix')
if platform.system() == 'Windows':
self.slicerElastixPath.setCurrentPath(
"C:/Programs/SlicerElastix/Elastix/")
#
# Input
#
self.inputCollapsibleButton = ctk.ctkCollapsibleButton()
self.inputCollapsibleButton.text = "Input"
self.layout.addWidget(self.inputCollapsibleButton)
# Layout within the input collapsible button
self.inputFormLayout = qt.QFormLayout(self.inputCollapsibleButton)
#
# rgb volume selector
#
self.inputVolumeSelector = slicer.qMRMLNodeComboBox()
self.inputVolumeSelector.nodeTypes = ["vtkMRMLVectorVolumeNode"]
self.inputVolumeSelector.selectNodeUponCreation = True
self.inputVolumeSelector.addEnabled = False
self.inputVolumeSelector.removeEnabled = False
self.inputVolumeSelector.noneEnabled = False
self.inputVolumeSelector.showHidden = False
self.inputVolumeSelector.showChildNodeTypes = False
self.inputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.inputFormLayout.addRow("Fixed volume: ", self.inputVolumeSelector)
###
"""
self.fixedVolumeMaskSelector = slicer.qMRMLNodeComboBox()
self.fixedVolumeMaskSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.fixedVolumeMaskSelector.addEnabled = False
self.fixedVolumeMaskSelector.removeEnabled = False
self.fixedVolumeMaskSelector.noneEnabled = True
self.fixedVolumeMaskSelector.showHidden = False
self.fixedVolumeMaskSelector.showChildNodeTypes = False
self.fixedVolumeMaskSelector.setMRMLScene( slicer.mrmlScene )
self.inputFormLayout.addRow("Fixed volume mask: ", self.fixedVolumeMaskSelector)
self.movingVolumeSelector = slicer.qMRMLNodeComboBox()
self.movingVolumeSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.movingVolumeSelector.selectNodeUponCreation = True
self.movingVolumeSelector.addEnabled = False
self.movingVolumeSelector.removeEnabled = False
self.movingVolumeSelector.noneEnabled = False
self.movingVolumeSelector.showHidden = False
self.movingVolumeSelector.showChildNodeTypes = False
self.movingVolumeSelector.setMRMLScene( slicer.mrmlScene )
self.inputFormLayout.addRow("Moving volume: ", self.movingVolumeSelector)
#
# moving volume mask selector
#
self.movingVolumeMaskSelector = slicer.qMRMLNodeComboBox()
self.movingVolumeMaskSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.movingVolumeMaskSelector.selectNodeUponCreation = True
self.movingVolumeMaskSelector.addEnabled = False
self.movingVolumeMaskSelector.removeEnabled = False
self.movingVolumeMaskSelector.noneEnabled = True
self.movingVolumeMaskSelector.showHidden = False
self.movingVolumeMaskSelector.showChildNodeTypes = False
self.movingVolumeMaskSelector.setMRMLScene( slicer.mrmlScene )
self.movingVolumeMaskSelector.setToolTip("Moving volume mask")
self.inputFormLayout.addRow("Moving volume mask: ", self.movingVolumeMaskSelector)
"""
#
#Output
#
self.outputCollapsibleButton = ctk.ctkCollapsibleButton()
self.outputCollapsibleButton.text = "Output"
self.layout.addWidget(self.outputCollapsibleButton)
# Layout within the output collapsible button
self.outputFormLayout = qt.QFormLayout(self.outputCollapsibleButton)
#
# output volume selector
#
self.outputVolumeSelector = slicer.qMRMLNodeComboBox()
self.outputVolumeSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.outputVolumeSelector.selectNodeUponCreation = True
self.outputVolumeSelector.addEnabled = True
self.outputVolumeSelector.renameEnabled = True
self.outputVolumeSelector.removeEnabled = True
self.outputVolumeSelector.noneEnabled = True
self.outputVolumeSelector.showHidden = False
self.outputVolumeSelector.showChildNodeTypes = False
self.outputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.outputFormLayout.addRow("Output volume: ",
self.outputVolumeSelector)
"""
#
# output transform selector
#
self.outputTransformSelector = slicer.qMRMLNodeComboBox()
self.outputTransformSelector.nodeTypes = ["vtkMRMLTransformNode"]
self.outputTransformSelector.selectNodeUponCreation = True
self.outputTransformSelector.addEnabled = True
self.outputTransformSelector.renameEnabled = True
self.outputTransformSelector.removeEnabled = True
self.outputTransformSelector.noneEnabled = True
self.outputTransformSelector.showHidden = False
self.outputTransformSelector.showChildNodeTypes = False
self.outputTransformSelector.setMRMLScene( slicer.mrmlScene )
self.outputFormLayout.addRow("Output transform: ", self.outputTransformSelector)
"""
# Add vertical spacer
self.layout.addStretch(1)
#
# Status and Progress
#
statusLabel = qt.QLabel("Status: ")
self.currentStatusLabel = qt.QLabel("Idle")
hlayout = qt.QHBoxLayout()
hlayout.addStretch(1)
hlayout.addWidget(statusLabel)
hlayout.addWidget(self.currentStatusLabel)
self.layout.addLayout(hlayout)
self.progress = qt.QProgressBar()
self.progress.setRange(0, 1000)
self.progress.setValue(0)
self.layout.addWidget(self.progress)
self.progress.hide()
#Cancel
self.cancelButton = qt.QPushButton("Cancel")
self.cancelButton.toolTip = "Abort the algorithm."
self.cancelButton.enabled = False
# Apply button
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the Radiology-Pathology Fusion."
self.applyButton.enabled = True
# Test button
self.testButton = qt.QPushButton("Test")
self.testButton.toolTip = "Text elastix."
self.testButton.enabled = True
hlayout = qt.QHBoxLayout()
hlayout.addWidget(self.testButton)
hlayout.addStretch(1)
hlayout.addWidget(self.cancelButton)
hlayout.addWidget(self.applyButton)
self.layout.addLayout(hlayout)
self.cancelButton.connect('clicked(bool)', self.onCancel)
self.applyButton.connect('clicked(bool)', self.onApply)
self.testButton.connect('clicked(bool)', self.onTest)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirSelector = ctk.ctkPathLineEdit()
self.inputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.inputDirSelector.settingKey = 'DICOMPatcherInputDir'
parametersFormLayout.addRow("Input DICOM directory:", self.inputDirSelector)
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'DICOMPatcherOutputDir'
parametersFormLayout.addRow("Output DICOM directory:", self.outputDirSelector)
self.normalizeFileNamesCheckBox = qt.QCheckBox()
self.normalizeFileNamesCheckBox.checked = True
self.normalizeFileNamesCheckBox.setToolTip("Replace file and folder names with automatically generated names."
" Fixes errors caused by file path containins special characters or being too long.")
parametersFormLayout.addRow("Normalize file names", self.normalizeFileNamesCheckBox)
self.forceSamePatientNameIdInEachDirectoryCheckBox = qt.QCheckBox()
self.forceSamePatientNameIdInEachDirectoryCheckBox.checked = False
self.forceSamePatientNameIdInEachDirectoryCheckBox.setToolTip("Generate patient name and ID from the first file in a directory"
" and force all other files in the same directory to have the same patient name and ID."
" Enable this option if a separate patient directory is created for each patched file.")
parametersFormLayout.addRow("Force same patient name and ID in each directory", self.forceSamePatientNameIdInEachDirectoryCheckBox)
self.generateMissingIdsCheckBox = qt.QCheckBox()
self.generateMissingIdsCheckBox.checked = True
self.generateMissingIdsCheckBox.setToolTip("Generate missing patient, study, series IDs. It is assumed that"
" all files in a directory belong to the same series. Fixes error caused by too aggressive anonymization"
" or incorrect DICOM image converters.")
parametersFormLayout.addRow("Generate missing patient/study/series IDs", self.generateMissingIdsCheckBox)
self.generateImagePositionFromSliceThicknessCheckBox = qt.QCheckBox()
self.generateImagePositionFromSliceThicknessCheckBox.checked = True
self.generateImagePositionFromSliceThicknessCheckBox.setToolTip("Generate 'image position sequence' for"
" multi-frame files that only have 'SliceThickness' field. Fixes error in Dolphin 3D CBCT scanners.")
parametersFormLayout.addRow("Generate slice position for multi-frame volumes", self.generateImagePositionFromSliceThicknessCheckBox)
self.anonymizeDicomCheckBox = qt.QCheckBox()
self.anonymizeDicomCheckBox.checked = False
self.anonymizeDicomCheckBox.setToolTip("If checked, then some patient identifiable information will be removed"
" from the patched DICOM files. There are many fields that can identify a patient, this function does not remove all of them.")
parametersFormLayout.addRow("Partially anonymize", self.anonymizeDicomCheckBox)
#
# Patch Button
#
self.patchButton = qt.QPushButton("Patch")
self.patchButton.toolTip = "Fix DICOM files in input directory and write them to output directory"
parametersFormLayout.addRow(self.patchButton)
#
# Import Button
#
self.importButton = qt.QPushButton("Import")
self.importButton.toolTip = "Import DICOM files in output directory into Slicer DICOM database"
parametersFormLayout.addRow(self.importButton)
#
# Switch to DICOM module Button
#
self.switchToDICOMModuleButton = qt.QPushButton("Go to DICOM module")
self.switchToDICOMModuleButton.toolTip = "Open DICOM module where imported data can be loaded into the scene"
parametersFormLayout.addRow(self.switchToDICOMModuleButton)
# connections
self.patchButton.connect('clicked(bool)', self.onPatchButton)
self.importButton.connect('clicked(bool)', self.onImportButton)
self.switchToDICOMModuleButton.connect('clicked(bool)', self.onSwitchToDICOMModuleButton)
self.statusLabel = qt.QPlainTextEdit()
self.statusLabel.setTextInteractionFlags(qt.Qt.TextSelectableByMouse)
parametersFormLayout.addRow(self.statusLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.logic = DICOMPatcherLogic()
self.logic.logCallback = self.addLog
def setup(self):
# Instantiate and connect widgets ...
#
# Reload and Test area
#
reloadCollapsibleButton = ctk.ctkCollapsibleButton()
reloadCollapsibleButton.text = "Reload && Test"
self.layout.addWidget(reloadCollapsibleButton)
reloadFormLayout = qt.QFormLayout(reloadCollapsibleButton)
# reload button
# (use this during development, but remove it when delivering
# your module to users)
self.reloadButton = qt.QPushButton("Reload")
self.reloadButton.toolTip = "Reload this module."
self.reloadButton.name = "BabyBrowser Reload"
reloadFormLayout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked()', self.onReload)
# reload and test button
# (use this during development, but remove it when delivering
# your module to users)
self.reloadAndTestButton = qt.QPushButton("Reload and Test")
self.reloadAndTestButton.toolTip = "Reload this module and then run the self tests."
reloadFormLayout.addWidget(self.reloadAndTestButton)
self.reloadAndTestButton.connect('clicked()', self.onReloadAndTest)
#
# Data Area
#
dataCollapsibleButton = ctk.ctkCollapsibleButton()
dataCollapsibleButton.text = "Data"
self.layout.addWidget(dataCollapsibleButton)
dataFormLayout = qt.QFormLayout(dataCollapsibleButton)
# pick the data directory and file pattern
self.pathEdit = ctk.ctkPathLineEdit()
self.pathEdit.setCurrentPath('/Users/pieper/data/babybrains/to_mprage-19/')
self.patternEdit = qt.QLineEdit()
self.patternEdit.setText('mprage-%d.nrrd')
self.loadButton = qt.QPushButton()
self.loadButton.text = "Load Data"
self.dataSlider = ctk.ctkSliderWidget()
self.dataSlider.setDecimals(0)
self.dataSlider.enabled = False
dataFormLayout.addRow("Data path: ", self.pathEdit)
dataFormLayout.addRow("Data pattern: ", self.patternEdit)
dataFormLayout.addRow(self.loadButton)
dataFormLayout.addRow("Data Select", self.dataSlider)
self.loadButton.connect('clicked()', self.onLoad)
self.dataSlider.connect('valueChanged(double)', self.onDataSlider)
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
parametersCollapsibleButton.collapsed = True
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# input volume selector
#
self.inputSelector = slicer.qMRMLNodeComboBox()
self.inputSelector.nodeTypes = ( ("vtkMRMLScalarVolumeNode"), "" )
self.inputSelector.addAttribute( "vtkMRMLScalarVolumeNode", "LabelMap", 0 )
self.inputSelector.selectNodeUponCreation = True
self.inputSelector.addEnabled = False
self.inputSelector.removeEnabled = False
self.inputSelector.noneEnabled = False
self.inputSelector.showHidden = False
self.inputSelector.showChildNodeTypes = False
self.inputSelector.setMRMLScene( slicer.mrmlScene )
self.inputSelector.setToolTip( "Pick the input to the algorithm." )
parametersFormLayout.addRow("Input Volume: ", self.inputSelector)
#
# output volume selector
#
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = ( ("vtkMRMLScalarVolumeNode"), "" )
self.outputSelector.addAttribute( "vtkMRMLScalarVolumeNode", "LabelMap", 0 )
self.outputSelector.selectNodeUponCreation = False
self.outputSelector.addEnabled = True
self.outputSelector.removeEnabled = True
self.outputSelector.noneEnabled = False
self.outputSelector.showHidden = False
self.outputSelector.showChildNodeTypes = False
self.outputSelector.setMRMLScene( slicer.mrmlScene )
self.outputSelector.setToolTip( "Pick the output to the algorithm." )
parametersFormLayout.addRow("Output Volume: ", self.outputSelector)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = False
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
self.inputSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onSelect)
self.outputSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onSelect)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirSelector = ctk.ctkPathLineEdit()
self.inputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.inputDirSelector.settingKey = 'DicomPatcherInputDir'
parametersFormLayout.addRow("Input DICOM directory:",
self.inputDirSelector)
self.outputDirSelector = ctk.ctkPathLineEdit()
self.outputDirSelector.filters = ctk.ctkPathLineEdit.Dirs
self.outputDirSelector.settingKey = 'DicomPatcherOutputDir'
parametersFormLayout.addRow("Output DICOM directory:",
self.outputDirSelector)
self.generateMissingIdsCheckBox = qt.QCheckBox()
self.generateMissingIdsCheckBox.checked = True
self.generateMissingIdsCheckBox.setToolTip(
"If checked, then missing patient, study, series IDs are generated. It is assumed that all files in a directory belong to the same series. Fixes error caused by too aggressive anonymization or incorrect DICOM image converters."
)
parametersFormLayout.addRow("Generate missing IDs",
self.generateMissingIdsCheckBox)
self.generateImagePositionFromSliceThicknessCheckBox = qt.QCheckBox()
self.generateImagePositionFromSliceThicknessCheckBox.checked = True
self.generateImagePositionFromSliceThicknessCheckBox.setToolTip(
"If checked, then image position sequence is generated for multi-frame files that only have SliceThickness field. Fixes error in Dolphin 3D CBCT scanners."
)
parametersFormLayout.addRow(
"Generate slice position for multi-frame volumes",
self.generateImagePositionFromSliceThicknessCheckBox)
self.anonymizeDicomCheckBox = qt.QCheckBox()
self.anonymizeDicomCheckBox.checked = False
self.anonymizeDicomCheckBox.setToolTip(
"If checked, then some patient identifiable information will be removed from the patched DICOM files. There are many fields that can identify a patient, this function does not remove all of them."
)
parametersFormLayout.addRow("Anonymize DICOM files",
self.anonymizeDicomCheckBox)
#
# Patch Button
#
self.patchButton = qt.QPushButton("Patch")
self.patchButton.toolTip = "Fix and optionally anonymize DICOM files"
parametersFormLayout.addRow(self.patchButton)
# connections
self.patchButton.connect('clicked(bool)', self.onPatchButton)
self.statusLabel = qt.QPlainTextEdit()
self.statusLabel.setTextInteractionFlags(qt.Qt.TextSelectableByMouse)
parametersFormLayout.addRow(self.statusLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.logic = DicomPatcherLogic()
self.logic.logCallback = self.addLog
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
self.logic = BitmapGeneratorLogic()
# Instantiate and connect widgets ...
#
# Printer parameters Area
#
printerParametersCollapsibleButton = ctk.ctkCollapsibleButton()
printerParametersCollapsibleButton.text = "Printer parameters"
self.layout.addWidget(printerParametersCollapsibleButton)
# Layout within the dummy collapsible button
printerParametersFormLayout = qt.QFormLayout(
printerParametersCollapsibleButton)
self.xResolutionDpiSpinBox = ctk.ctkDoubleSpinBox()
self.xResolutionDpiSpinBox.setToolTip(
"Resolution of exported images along X axis.")
self.xResolutionDpiSpinBox.decimals = 0
self.xResolutionDpiSpinBox.minimum = 60
self.xResolutionDpiSpinBox.maximum = 2400
self.xResolutionDpiSpinBox.suffix = "DPI"
self.xResolutionDpiSpinBox.value = self.logic.xResolutionDpi
self.xResolutionDpiSpinBox.singleStep = 100
printerParametersFormLayout.addRow("X resolution: ",
self.xResolutionDpiSpinBox)
self.yResolutionDpiSpinBox = ctk.ctkDoubleSpinBox()
self.yResolutionDpiSpinBox.setToolTip(
"Resolution of exported images along Y axis.")
self.yResolutionDpiSpinBox.decimals = 0
self.yResolutionDpiSpinBox.minimum = 60
self.yResolutionDpiSpinBox.maximum = 2400
self.yResolutionDpiSpinBox.suffix = "DPI"
self.yResolutionDpiSpinBox.value = self.logic.yResolutionDpi
self.yResolutionDpiSpinBox.singleStep = 100
printerParametersFormLayout.addRow("Y resolution: ",
self.yResolutionDpiSpinBox)
self.layerThicknessMmSpinBox = ctk.ctkDoubleSpinBox()
self.layerThicknessMmSpinBox.setToolTip(
"Distance between extracted image slices.")
self.layerThicknessMmSpinBox.decimals = 4
self.layerThicknessMmSpinBox.minimum = 0.0001
self.layerThicknessMmSpinBox.maximum = 50.0
self.layerThicknessMmSpinBox.suffix = "mm"
self.layerThicknessMmSpinBox.value = self.logic.slabSpacingMm
self.layerThicknessMmSpinBox.singleStep = 0.1
printerParametersFormLayout.addRow("Layer thickness: ",
self.layerThicknessMmSpinBox)
#
# Output parameters Area
#
outputParametersCollapsibleButton = ctk.ctkCollapsibleButton()
outputParametersCollapsibleButton.text = "Output parameters"
self.layout.addWidget(outputParametersCollapsibleButton)
# Layout within the dummy collapsible button
outputParametersFormLayout = qt.QFormLayout(
outputParametersCollapsibleButton)
self.printScaleSpinBox = ctk.ctkDoubleSpinBox()
self.printScaleSpinBox.setToolTip(
"Scale of print size relative to real life size. 1.0 means printing in real life size, <1.0 means printed objects are smaller than in real life."
)
self.printScaleSpinBox.decimals = 3
self.printScaleSpinBox.minimum = 0.01
self.printScaleSpinBox.maximum = 100.0
self.printScaleSpinBox.suffix = "x"
self.printScaleSpinBox.value = self.logic.printScale
self.printScaleSpinBox.singleStep = 0.1
outputParametersFormLayout.addRow("Scale: ", self.printScaleSpinBox)
#
# Path
#
self.dirPath = ctk.ctkPathLineEdit()
self.dirPath.filters = ctk.ctkPathLineEdit.Dirs
self.dirPath.settingKey = 'BitmapGeneratorOutputFolder'
#self.dirPath.currentPath = "/tmp"
outputParametersFormLayout.addRow("Output folder: ", self.dirPath)
#
# Apply Button
#
self.applyButtonLabelGenerate = "Generate bitmaps"
self.applyButtonLabelCancel = "Cancel"
self.applyButton = qt.QPushButton(self.applyButtonLabelGenerate)
self.applyButton.toolTip = "Start/cancel bitmap generation"
outputParametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Multi Texture Section
#
multiTextureParametersCollapsibleButton = ctk.ctkCollapsibleButton()
multiTextureParametersCollapsibleButton.text = "Import Multi Texture OBJ"
self.layout.addWidget(multiTextureParametersCollapsibleButton)
multiTextureParametersCollapsibleButton.collapsed = True
# Layout within the dummy collapsible button
multiTextureparametersFormLayout = qt.QFormLayout(
multiTextureParametersCollapsibleButton)
# Input OBJ file path
self.baseMeshSelector = ctk.ctkPathLineEdit()
self.baseMeshSelector.nameFilters = ["*.obj"]
multiTextureparametersFormLayout.addRow("Model file: ",
self.baseMeshSelector)
# Input MTL file path
self.materialFileSelector = ctk.ctkPathLineEdit()
self.materialFileSelector.nameFilters = ["*.mtl"]
multiTextureparametersFormLayout.addRow("Material file: ",
self.materialFileSelector)
# Input texture image directory path
self.textureDirectory = ctk.ctkPathLineEdit()
self.textureDirectory.filters = ctk.ctkPathLineEdit.Dirs
self.textureDirectory.setToolTip(
"Select directory containing texture images")
multiTextureparametersFormLayout.addRow("Texture directory: ",
self.textureDirectory)
self.multiTextureAddColorAsPointAttributeComboBox = qt.QComboBox()
self.multiTextureAddColorAsPointAttributeComboBox.addItem("disabled")
self.multiTextureAddColorAsPointAttributeComboBox.addItem(
"separate scalars")
self.multiTextureAddColorAsPointAttributeComboBox.addItem(
"single vector")
self.multiTextureAddColorAsPointAttributeComboBox.setCurrentIndex(0)
self.multiTextureAddColorAsPointAttributeComboBox.setToolTip(
"It is useful if further color-based filtering will be performed on the model."
)
multiTextureparametersFormLayout.addRow(
"Save color information as point data: ",
self.multiTextureAddColorAsPointAttributeComboBox)
#
# Apply Button
#
self.multiTextureApplyButton = qt.QPushButton("Import")
self.multiTextureApplyButton.toolTip = "Import model with multiple texture images to scene."
self.multiTextureApplyButton.enabled = False
multiTextureparametersFormLayout.addRow(self.multiTextureApplyButton)
# connections
self.multiTextureApplyButton.connect('clicked(bool)',
self.onMultiTextureApplyButton)
self.baseMeshSelector.connect("validInputChanged(bool)",
self.onMultiTextureSelect)
self.materialFileSelector.connect("validInputChanged(bool)",
self.onMultiTextureSelect)
self.textureDirectory.connect("validInputChanged(bool)",
self.onMultiTextureSelect)
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# input volume selector
#
self.inputModelSelector = slicer.qMRMLNodeComboBox()
self.inputModelSelector.nodeTypes = ["vtkMRMLModelNode"]
self.inputModelSelector.addEnabled = False
self.inputModelSelector.removeEnabled = True
self.inputModelSelector.renameEnabled = True
self.inputModelSelector.noneEnabled = False
self.inputModelSelector.showHidden = False
self.inputModelSelector.showChildNodeTypes = False
self.inputModelSelector.setMRMLScene(slicer.mrmlScene)
self.inputModelSelector.setToolTip(
"Model node containing geometry and texture coordinates.")
parametersFormLayout.addRow("Model: ", self.inputModelSelector)
#input texture selector
self.inputTextureSelector = slicer.qMRMLNodeComboBox()
self.inputTextureSelector.nodeTypes = ["vtkMRMLVectorVolumeNode"]
self.inputTextureSelector.addEnabled = False
self.inputTextureSelector.removeEnabled = True
self.inputTextureSelector.renameEnabled = True
self.inputTextureSelector.noneEnabled = False
self.inputTextureSelector.showHidden = False
self.inputTextureSelector.showChildNodeTypes = False
self.inputTextureSelector.setMRMLScene(slicer.mrmlScene)
self.inputTextureSelector.setToolTip(
"Color image containing texture image.")
parametersFormLayout.addRow("Texture: ", self.inputTextureSelector)
self.addColorAsPointAttributeComboBox = qt.QComboBox()
self.addColorAsPointAttributeComboBox.addItem("disabled")
self.addColorAsPointAttributeComboBox.addItem("separate scalars")
self.addColorAsPointAttributeComboBox.addItem("single vector")
self.addColorAsPointAttributeComboBox.setCurrentIndex(0)
self.addColorAsPointAttributeComboBox.setToolTip(
"It is useful if further color-based filtering will be performed on the model."
)
parametersFormLayout.addRow("Save color information as point data: ",
self.addColorAsPointAttributeComboBox)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Apply texture to selected model."
self.applyButton.enabled = False
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
self.inputModelSelector.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
self.inputTextureSelector.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
# Add vertical spacer
self.layout.addStretch(1)
# Refresh Apply button state
self.onSelect()
self.onMultiTextureSelect()
def setupAdvancedPanel(self):
logging.debug('setupAdvancedPanel')
self.advancedCollapsibleButton.setProperty('collapsedHeight', 20)
self.advancedCollapsibleButton.text = "Settings"
self.sliceletPanelLayout.addWidget(self.advancedCollapsibleButton)
self.advancedLayout = qt.QFormLayout(self.advancedCollapsibleButton)
self.advancedLayout.setContentsMargins(12, 4, 4, 4)
self.advancedLayout.setSpacing(4)
# Layout selection combo box
self.viewSelectorComboBox = qt.QComboBox(
self.advancedCollapsibleButton)
self.setupViewerLayouts()
self.advancedLayout.addRow("Layout: ", self.viewSelectorComboBox)
self.registerCustomLayouts()
self.selectView(self.VIEW_ULTRASOUND_3D)
# OpenIGTLink connector node selection
self.linkInputSelector = slicer.qMRMLNodeComboBox()
self.linkInputSelector.nodeTypes = ("vtkMRMLIGTLConnectorNode", "")
self.linkInputSelector.selectNodeUponCreation = True
self.linkInputSelector.addEnabled = False
self.linkInputSelector.removeEnabled = True
self.linkInputSelector.noneEnabled = False
self.linkInputSelector.showHidden = False
self.linkInputSelector.showChildNodeTypes = False
self.linkInputSelector.setMRMLScene(slicer.mrmlScene)
self.linkInputSelector.setToolTip("Select connector node")
self.advancedLayout.addRow("OpenIGTLink connector: ",
self.linkInputSelector)
self.showFullSlicerInterfaceButton = qt.QPushButton()
self.showFullSlicerInterfaceButton.setText(
"Show 3D Slicer user interface")
self.advancedLayout.addRow(self.showFullSlicerInterfaceButton)
self.showGuideletFullscreenButton = qt.QPushButton()
self.showGuideletFullscreenButton.setText(
"Show Guidelet in full screen")
self.advancedLayout.addRow(self.showGuideletFullscreenButton)
self.saveSceneButton = qt.QPushButton()
self.saveSceneButton.setText("Save Guidelet scene")
self.advancedLayout.addRow(self.saveSceneButton)
self.saveDirectoryLineEdit = ctk.ctkPathLineEdit()
node = self.logic.getParameterNode()
sceneSaveDirectory = node.GetParameter('SavedScenesDirectory')
self.saveDirectoryLineEdit.currentPath = sceneSaveDirectory
self.saveDirectoryLineEdit.filters = ctk.ctkPathLineEdit.Dirs
self.saveDirectoryLineEdit.options = ctk.ctkPathLineEdit.DontUseSheet
self.saveDirectoryLineEdit.options = ctk.ctkPathLineEdit.ShowDirsOnly
self.saveDirectoryLineEdit.showHistoryButton = False
self.saveDirectoryLineEdit.setMinimumWidth(100)
self.saveDirectoryLineEdit.setMaximumWidth(500)
saveLabel = qt.QLabel()
saveLabel.setText("Save scene directory:")
hbox = qt.QHBoxLayout()
hbox.addWidget(saveLabel)
hbox.addWidget(self.saveDirectoryLineEdit)
self.advancedLayout.addRow(hbox)
self.exitButton = qt.QPushButton()
self.exitButton.setText("Exit")
self.advancedLayout.addRow(self.exitButton)
def setupAdvancedPanel(self):
logging.debug('setupAdvancedPanel')
self.advancedCollapsibleButton.setProperty('collapsedHeight', 20)
self.advancedCollapsibleButton.text = "Settings"
self.sliceletPanelLayout.addWidget(self.advancedCollapsibleButton)
self.advancedLayout = qt.QFormLayout(self.advancedCollapsibleButton)
self.advancedLayout.setContentsMargins(12, 4, 4, 4)
self.advancedLayout.setSpacing(4)
# Layout selection combo box
self.viewSelectorComboBox = qt.QComboBox(self.advancedCollapsibleButton)
self.advancedLayout.addRow("Layout: ", self.viewSelectorComboBox)
self.registerDefaultGuideletLayouts()
self.selectView(self.VIEW_ULTRASOUND_3D)
# OpenIGTLink connector node selection
self.linkInputSelector = slicer.qMRMLNodeComboBox()
self.linkInputSelector.nodeTypes = ("vtkMRMLIGTLConnectorNode", "")
self.linkInputSelector.selectNodeUponCreation = True
self.linkInputSelector.addEnabled = False
self.linkInputSelector.removeEnabled = True
self.linkInputSelector.noneEnabled = False
self.linkInputSelector.showHidden = False
self.linkInputSelector.showChildNodeTypes = False
self.linkInputSelector.setMRMLScene( slicer.mrmlScene )
self.linkInputSelector.setToolTip( "Select connector node" )
self.advancedLayout.addRow("OpenIGTLink connector: ", self.linkInputSelector)
self.showFullSlicerInterfaceButton = qt.QPushButton()
self.showFullSlicerInterfaceButton.setText("Show 3D Slicer user interface")
self.advancedLayout.addRow(self.showFullSlicerInterfaceButton)
self.showGuideletFullscreenButton = qt.QPushButton()
self.showGuideletFullscreenButton.setText("Show Guidelet in full screen")
self.advancedLayout.addRow(self.showGuideletFullscreenButton)
self.saveSceneButton = qt.QPushButton()
self.saveSceneButton.setText("Save Guidelet scene")
self.advancedLayout.addRow(self.saveSceneButton)
self.saveDirectoryLineEdit = ctk.ctkPathLineEdit()
node = self.logic.getParameterNode()
sceneSaveDirectory = node.GetParameter('SavedScenesDirectory')
self.saveDirectoryLineEdit.currentPath = sceneSaveDirectory
self.saveDirectoryLineEdit.filters = ctk.ctkPathLineEdit.Dirs
self.saveDirectoryLineEdit.options = ctk.ctkPathLineEdit.DontUseSheet
self.saveDirectoryLineEdit.options = ctk.ctkPathLineEdit.ShowDirsOnly
self.saveDirectoryLineEdit.showHistoryButton = False
self.saveDirectoryLineEdit.setMinimumWidth(100)
self.saveDirectoryLineEdit.setMaximumWidth(500)
saveLabel = qt.QLabel()
saveLabel.setText("Save scene directory:")
hbox = qt.QHBoxLayout()
hbox.addWidget(saveLabel)
hbox.addWidget(self.saveDirectoryLineEdit)
self.advancedLayout.addRow(hbox)
self.exitButton = qt.QPushButton()
self.exitButton.setText("Exit")
self.advancedLayout.addRow(self.exitButton)
