def loadSeedsDialog(self):
self.set_busy(True)
fname = QFileDialog.getOpenFileName(self, 'Open seeds file')
if os.path.isfile(fname) :
self.textBox.append('Reading seeds from '+fname+'...')
try:
self.seeds = sbml.readSBMLseeds(fname)
self.textBox.append('done.')
except: self.textBox.append('failed.')
self.set_busy(False)
self.checkState()
args = parser.parse_args()
draft_sbml = args.draftnetwork
repair_sbml = args.repairnetwork
seeds_sbml = args.seeds
targets_sbml = args.targets
print('Reading draft network from ',draft_sbml,'...',end=' ')
sys.stdout.flush()
draftnet = sbml.readSBMLnetwork(draft_sbml, 'draft')
print('done.')
#draftnet.to_file("draftnet.lp")
print('Reading seeds from ',seeds_sbml,'...',end=' ')
sys.stdout.flush()
seeds = sbml.readSBMLseeds(seeds_sbml)
print('done.')
#seeds.to_file("seeds.lp")
print('Reading targets from ',targets_sbml,'...',end=' ')
sys.stdout.flush()
targets = sbml.readSBMLtargets(targets_sbml)
print('done.')
#targets.to_file("targets.lp")
print('\nChecking draftnet for unproducible targets ...',end=' ')
sys.stdout.flush()
model = query.get_unproducible(draftnet, targets, seeds)
print('done.')
print(' ',len(model),'unproducible targets:')
utils.print_met(model.to_list())
