def read(results_file):
"""Parse a CODEML results file."""
results = {}
if not os.path.exists(results_file):
raise IOError, "Results file does not exist."
handle = open(results_file)
lines = handle.readlines()
handle.close()
(results, multi_models) = _parse_codeml.parse_basics(lines, results)
results = _parse_codeml.parse_nssites(lines, results, multi_models)
results = _parse_codeml.parse_pairwise(lines, results)
results = _parse_codeml.parse_distances(lines, results)
if len(results) == 0:
raise ValueError, "Invalid results file"
return results
def read(results_file):
"""Parse a CODEML results file."""
results = {}
if not os.path.exists(results_file):
raise IOError, "Results file does not exist."
handle = open(results_file)
lines = handle.readlines()
handle.close()
(results, multi_models) = _parse_codeml.parse_basics(lines, results)
results = _parse_codeml.parse_nssites(lines, results, multi_models)
results = _parse_codeml.parse_pairwise(lines, results)
results = _parse_codeml.parse_distances(lines, results)
if len(results) == 0:
raise ValueError, "Invalid results file"
return results