def searchImages(allele_id=None, limit=None):
query = Image.query
molimages = []
phenoimagesbyallele = []
phenoimagesbygenotype = []
# for this allele, use it's allele assoc objects to gather images
if allele_id:
allele = getModelByMGIID(Allele, allele_id)
for molecularimagepane in allele.molecularimagepanes:
molimages.append(molecularimagepane.image)
for phenoimagepane in allele.phenoimagepanes:
phenoimagesbyallele.append(phenoimagepane.image)
# images associated to this allele's genotypes
for genotype in allele.genotypes:
for pane in genotype.imagepanes:
phenoimagesbygenotype.append(pane.image)
return molimages, phenoimagesbyallele, phenoimagesbygenotype
def getAssayByMGIID(id):
id = id.upper()
#return Assay.query.filter_by(mgiid=id).first()
return getModelByMGIID(Assay, id)
def getImageByMGIID(id):
id = id.upper()
#image = Image.query.filter_by(mgiid=id).first()
image = getModelByMGIID(Image, id, 'acc_mgitype_key')
return image
def getExperimentByMGIID(id):
id = id.upper()
#marker = Marker.query.filter_by(mgiid=id).first()
experiment = getModelByMGIID(MappingExperiment, id)
_prepExperiment(experiment)
return experiment
def getMarkerByMGIID(id):
id = id.upper()
#marker = Marker.query.filter_by(mgiid=id).first()
marker = getModelByMGIID(Marker, id)
_prepMarker(marker)
return marker
def getProbeByMGIID(id):
id = id.upper()
#marker = Marker.query.filter_by(mgiid=id).first()
probe = getModelByMGIID(Probe, id)
_prepProbe(probe)
return probe
def getAlleleByMGIID(id):
id = id.upper()
#allele = Allele.query.filter_by(mgiid=id).first()
allele = getModelByMGIID(Allele, id)
return allele
def getAntibodyByMGIID(id):
id = id.upper()
antibody = getModelByMGIID(Antibody, id)
_prepAntibody(antibody)
return antibody