def __init__(self, dev, win):
Qt.QWidget.__init__(self)
self.win = win
self.dev = dev
self.layout = Qt.QGridLayout()
self.setLayout(self.layout)
self.axCtrls = {}
self.posLabels = {}
self.limitChecks = {}
cap = dev.capabilities()
self.nextRow = 0
for axis in (0, 1, 2):
if cap['getPos'][axis]:
axLabel = Qt.QLabel('XYZ'[axis])
axLabel.setMaximumWidth(15)
posLabel = Qt.QLabel('0')
self.posLabels[axis] = posLabel
widgets = [axLabel, posLabel]
if cap['limits'][axis]:
minCheck = Qt.QCheckBox('Min:')
minCheck.tag = (axis, 0)
# minBtn = Qt.QPushButton('set')
# minBtn.tag = (axis, 0)
# minBtn.setMaximumWidth(30)
maxCheck = Qt.QCheckBox('Max:')
maxCheck.tag = (axis, 1)
# maxBtn = Qt.QPushButton('set')
# maxBtn.tag = (axis, 1)
# maxBtn.setMaximumWidth(30)
self.limitChecks[axis] = (minCheck, maxCheck)
widgets.extend([minCheck, maxCheck])
for check in (minCheck, maxCheck):
check.clicked.connect(self.limitCheckClicked)
# for btn in (minBtn, maxBtn):
# btn.sigClicked.connect(self.limitBtnClicked)
for i, w in enumerate(widgets):
self.layout.addWidget(w, self.nextRow, i)
self.axCtrls[axis] = widgets
self.nextRow += 1
self.updateLimits()
self.dev.sigPositionChanged.connect(self.update)
self.dev.sigLimitsChanged.connect(self.updateLimits)
self.update()
def writeParams(self):
nodes = self.flowchart.nodes()
params = {}
#excludes=['Input', 'Output', 'GatherInfo', 'NegativeEventFilter', 'EventListPlotter', 'ColumnJoin', 'ColumnSelect', 'Plot']
includes = ['DenoiseFilter','LowPassBesselFilter','HighPassBesselFilter','DetrendFilter','HistogramDetrend','ExpDeconvolve','ThresholdEvents','CaEventFitter']
## get previously stored values
if os.path.exists(self.paramStorageFile):
prev = pg.configfile.readConfigFile(self.paramStorageFile)
else:
prev = {}
for name in includes:
node = nodes[name]
d = {}
if hasattr(node, 'ctrls'):
for k, v in node.ctrls.items():
if type(v) == type(Qt.QCheckBox()):
d[k] = v.isChecked()
elif type(v) == type(Qt.QComboBox()):
d[k] = str(v.currentText())
elif type(v) in [type(Qt.QSpinBox()), type(Qt.QDoubleSpinBox()), type(pg.SpinBox())]:
d[k] = v.value()
else:
print("Not saving param %s for node %s because we don't know how to record value of type %s" %(k, name, str(type(v))))
d['bypassed'] = node.isBypassed()
params[name] = d
item = self.fileLoader.ui.fileTree.currentItem()
roi = str(item.text(0))
## replace or add previously stored values
prev[roi] = params
pg.configfile.writeConfigFile(prev, self.paramStorageFile)
def __init__(self, dev, taskRunner):
TaskGui.__init__(self, dev, taskRunner)
self.layout = Qt.QGridLayout()
self.setLayout(self.layout)
self.blankCheck = Qt.QCheckBox("Blank Screen")
self.layout.addWidget(self.blankCheck)
def setupUi(self, Form):
Form.setObjectName(_fromUtf8("Form"))
Form.resize(228, 75)
self.gridLayout = Qt.QGridLayout(Form)
self.gridLayout.setMargin(0)
self.gridLayout.setVerticalSpacing(0)
self.gridLayout.setObjectName(_fromUtf8("gridLayout"))
self.label = Qt.QLabel(Form)
self.label.setObjectName(_fromUtf8("label"))
self.gridLayout.addWidget(self.label, 0, 0, 1, 1)
self.slicePlaneCombo = Qt.QComboBox(Form)
self.slicePlaneCombo.setObjectName(_fromUtf8("slicePlaneCombo"))
self.slicePlaneCombo.addItem(_fromUtf8(""))
self.slicePlaneCombo.addItem(_fromUtf8(""))
self.slicePlaneCombo.addItem(_fromUtf8(""))
self.slicePlaneCombo.addItem(_fromUtf8(""))
self.gridLayout.addWidget(self.slicePlaneCombo, 0, 1, 1, 1)
self.label_2 = Qt.QLabel(Form)
self.label_2.setObjectName(_fromUtf8("label_2"))
self.gridLayout.addWidget(self.label_2, 1, 0, 1, 1)
self.hemisphereCombo = Qt.QComboBox(Form)
self.hemisphereCombo.setObjectName(_fromUtf8("hemisphereCombo"))
self.hemisphereCombo.addItem(_fromUtf8(""))
self.hemisphereCombo.addItem(_fromUtf8(""))
self.gridLayout.addWidget(self.hemisphereCombo, 1, 1, 1, 1)
self.label_3 = Qt.QLabel(Form)
self.label_3.setObjectName(_fromUtf8("label_3"))
self.gridLayout.addWidget(self.label_3, 3, 0, 1, 1)
self.thicknessSpin = SpinBox(Form)
self.thicknessSpin.setObjectName(_fromUtf8("thicknessSpin"))
self.gridLayout.addWidget(self.thicknessSpin, 3, 1, 1, 1)
self.photoCheck = Qt.QCheckBox(Form)
self.photoCheck.setObjectName(_fromUtf8("photoCheck"))
self.gridLayout.addWidget(self.photoCheck, 2, 0, 1, 1)
self.drawingCheck = Qt.QCheckBox(Form)
self.drawingCheck.setChecked(True)
self.drawingCheck.setObjectName(_fromUtf8("drawingCheck"))
self.gridLayout.addWidget(self.drawingCheck, 2, 1, 1, 1)
self.retranslateUi(Form)
Qt.QMetaObject.connectSlotsByName(Form)
def __init__(self, cp, parentImage=None):
self.cp = cp
Qt.QTreeWidgetItem.__init__(self)
self.paramCombo = pg.ComboBox()
self.thresholdSpin = pg.SpinBox(value=0.98, dec=True, step=0.1)
self.maxCheck = Qt.QCheckBox()
self.colorBtn = ColorButton(color=(255,255,255))
self.remBtn = Qt.QPushButton('Remove')
self.curveItem = pg.IsocurveItem()
self.curveItem.setParentItem(parentImage)
self.paramCombo.currentIndexChanged.connect(self.emitChanged)
self.thresholdSpin.valueChanged.connect(self.emitChanged)
self.maxCheck.stateChanged.connect(self.emitChanged)
self.colorBtn.sigColorChanged.connect(self.setPen)
self.remBtn.clicked.connect(self.delete)
def __init__(self):
Qt.QDialog.__init__(self)
#self.setModal(False)
self.setWindowFlags(Qt.Qt.Window)
#self.setWindowModality(Qt.Qt.NonModal)
self.setWindowTitle('ACQ4 Error')
self.layout = Qt.QVBoxLayout()
self.layout.setContentsMargins(3, 3, 3, 3)
self.setLayout(self.layout)
self.messages = []
self.msgLabel = Qt.QLabel()
#self.msgLabel.setWordWrap(False)
#self.msgLabel.setMaximumWidth(800)
self.msgLabel.setSizePolicy(Qt.QSizePolicy.Expanding,
Qt.QSizePolicy.Expanding)
#self.msgLabel.setFrameStyle(Qt.QFrame.Box)
#self.msgLabel.setStyleSheet('QLabel { font-weight: bold }')
self.layout.addWidget(self.msgLabel)
self.msgLabel.setMaximumWidth(800)
self.msgLabel.setMinimumWidth(500)
self.msgLabel.setWordWrap(True)
self.layout.addStretch()
self.disableCheck = Qt.QCheckBox('Disable error message popups')
self.layout.addWidget(self.disableCheck)
self.btnLayout = Qt.QHBoxLayout()
self.btnLayout.addStretch()
self.okBtn = Qt.QPushButton('OK')
self.btnLayout.addWidget(self.okBtn)
self.nextBtn = Qt.QPushButton('Show next error')
self.btnLayout.addWidget(self.nextBtn)
self.nextBtn.hide()
self.logBtn = Qt.QPushButton('Show Log...')
self.btnLayout.addWidget(self.logBtn)
self.btnLayoutWidget = Qt.QWidget()
self.layout.addWidget(self.btnLayoutWidget)
self.btnLayoutWidget.setLayout(self.btnLayout)
self.btnLayout.addStretch()
self.okBtn.clicked.connect(self.okClicked)
self.nextBtn.clicked.connect(self.nextMessage)
self.logBtn.clicked.connect(self.logClicked)
def setupUi(self, Form):
Form.setObjectName(_fromUtf8("Form"))
Form.resize(384, 410)
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Minimum,
Qt.QSizePolicy.Minimum)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(Form.sizePolicy().hasHeightForWidth())
Form.setSizePolicy(sizePolicy)
Form.setMaximumSize(Qt.QSize(384, 410))
font = Qt.QFont()
font.setFamily(_fromUtf8("Arial"))
font.setPointSize(12)
Form.setFont(font)
self.gridLayout = Qt.QGridLayout(Form)
self.gridLayout.setMargin(0)
self.gridLayout.setHorizontalSpacing(10)
self.gridLayout.setVerticalSpacing(0)
self.gridLayout.setObjectName(_fromUtf8("gridLayout"))
self.groupBox = Qt.QGroupBox(Form)
self.groupBox.setMaximumSize(Qt.QSize(392, 410))
font = Qt.QFont()
font.setFamily(_fromUtf8("Lucida Grande"))
font.setPointSize(13)
self.groupBox.setFont(font)
self.groupBox.setAlignment(Qt.Qt.AlignCenter)
self.groupBox.setFlat(True)
self.groupBox.setObjectName(_fromUtf8("groupBox"))
self.groupBox_3 = Qt.QGroupBox(self.groupBox)
self.groupBox_3.setGeometry(Qt.QRect(15, 20, 171, 371))
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Preferred,
Qt.QSizePolicy.Expanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(
self.groupBox_3.sizePolicy().hasHeightForWidth())
self.groupBox_3.setSizePolicy(sizePolicy)
palette = Qt.QPalette()
brush = Qt.QBrush(Qt.QColor(99, 99, 99))
brush.setStyle(Qt.Qt.SolidPattern)
palette.setBrush(Qt.QPalette.Active, Qt.QPalette.Shadow, brush)
brush = Qt.QBrush(Qt.QColor(99, 99, 99))
brush.setStyle(Qt.Qt.SolidPattern)
palette.setBrush(Qt.QPalette.Inactive, Qt.QPalette.Shadow, brush)
brush = Qt.QBrush(Qt.QColor(99, 99, 99))
brush.setStyle(Qt.Qt.SolidPattern)
palette.setBrush(Qt.QPalette.Disabled, Qt.QPalette.Shadow, brush)
self.groupBox_3.setPalette(palette)
self.groupBox_3.setObjectName(_fromUtf8("groupBox_3"))
self.layoutWidget = Qt.QWidget(self.groupBox_3)
self.layoutWidget.setGeometry(Qt.QRect(10, 240, 146, 26))
self.layoutWidget.setObjectName(_fromUtf8("layoutWidget"))
self.horizontalLayout_10 = Qt.QHBoxLayout(self.layoutWidget)
self.horizontalLayout_10.setMargin(9)
self.horizontalLayout_10.setSpacing(6)
self.horizontalLayout_10.setObjectName(
_fromUtf8("horizontalLayout_10"))
self.label_6 = Qt.QLabel(self.layoutWidget)
self.label_6.setObjectName(_fromUtf8("label_6"))
self.horizontalLayout_10.addWidget(self.label_6)
self.ImagePhys_ROIKernel = Qt.QComboBox(self.layoutWidget)
self.ImagePhys_ROIKernel.setMaximumSize(Qt.QSize(75, 16777215))
self.ImagePhys_ROIKernel.setToolTip(_fromUtf8(""))
self.ImagePhys_ROIKernel.setLayoutDirection(Qt.Qt.LeftToRight)
self.ImagePhys_ROIKernel.setStyleSheet(
_fromUtf8("<align = \'right\'>"))
self.ImagePhys_ROIKernel.setMaxVisibleItems(1)
self.ImagePhys_ROIKernel.setMaxCount(10)
self.ImagePhys_ROIKernel.setSizeAdjustPolicy(
Qt.QComboBox.AdjustToMinimumContentsLength)
self.ImagePhys_ROIKernel.setFrame(False)
self.ImagePhys_ROIKernel.setModelColumn(0)
self.ImagePhys_ROIKernel.setObjectName(
_fromUtf8("ImagePhys_ROIKernel"))
self.ImagePhys_ROIKernel.addItem(_fromUtf8(""))
self.ImagePhys_ROIKernel.addItem(_fromUtf8(""))
self.ImagePhys_ROIKernel.addItem(_fromUtf8(""))
self.ImagePhys_ROIKernel.addItem(_fromUtf8(""))
self.ImagePhys_ROIKernel.addItem(_fromUtf8(""))
self.ImagePhys_ROIKernel.addItem(_fromUtf8(""))
self.horizontalLayout_10.addWidget(self.ImagePhys_ROIKernel)
self.layoutWidget1 = Qt.QWidget(self.groupBox_3)
self.layoutWidget1.setGeometry(Qt.QRect(5, 215, 156, 25))
self.layoutWidget1.setObjectName(_fromUtf8("layoutWidget1"))
self.horizontalLayout_14 = Qt.QHBoxLayout(self.layoutWidget1)
self.horizontalLayout_14.setMargin(9)
self.horizontalLayout_14.setSpacing(6)
self.horizontalLayout_14.setObjectName(
_fromUtf8("horizontalLayout_14"))
self.ImagePhys_StdRB = Qt.QRadioButton(self.layoutWidget1)
self.ImagePhys_StdRB.setObjectName(_fromUtf8("ImagePhys_StdRB"))
self.horizontalLayout_14.addWidget(self.ImagePhys_StdRB)
self.ImagePhys_FFTRB = Qt.QRadioButton(self.layoutWidget1)
self.ImagePhys_FFTRB.setChecked(True)
self.ImagePhys_FFTRB.setObjectName(_fromUtf8("ImagePhys_FFTRB"))
self.horizontalLayout_14.addWidget(self.ImagePhys_FFTRB)
self.layoutWidget2 = Qt.QWidget(self.groupBox_3)
self.layoutWidget2.setGeometry(Qt.QRect(10, 270, 146, 100))
self.layoutWidget2.setObjectName(_fromUtf8("layoutWidget2"))
self.verticalLayout_2 = Qt.QVBoxLayout(self.layoutWidget2)
self.verticalLayout_2.setMargin(9)
self.verticalLayout_2.setSpacing(6)
self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
self.ImagePhys_RecalculateROIs = Qt.QPushButton(self.layoutWidget2)
self.ImagePhys_RecalculateROIs.setObjectName(
_fromUtf8("ImagePhys_RecalculateROIs"))
self.verticalLayout_2.addWidget(self.ImagePhys_RecalculateROIs)
self.ImagePhys_RetrieveROI = Qt.QPushButton(self.layoutWidget2)
self.ImagePhys_RetrieveROI.setObjectName(
_fromUtf8("ImagePhys_RetrieveROI"))
self.verticalLayout_2.addWidget(self.ImagePhys_RetrieveROI)
self.ImagePhys_SaveROI = Qt.QPushButton(self.layoutWidget2)
self.ImagePhys_SaveROI.setObjectName(_fromUtf8("ImagePhys_SaveROI"))
self.verticalLayout_2.addWidget(self.ImagePhys_SaveROI)
self.widget = Qt.QWidget(self.groupBox_3)
self.widget.setGeometry(Qt.QRect(5, 20, 161, 136))
self.widget.setObjectName(_fromUtf8("widget"))
self.gridLayout_2 = Qt.QGridLayout(self.widget)
self.gridLayout_2.setMargin(9)
self.gridLayout_2.setSpacing(6)
self.gridLayout_2.setObjectName(_fromUtf8("gridLayout_2"))
self.ImagePhys_addRoi = Qt.QPushButton(self.widget)
self.ImagePhys_addRoi.setObjectName(_fromUtf8("ImagePhys_addRoi"))
self.gridLayout_2.addWidget(self.ImagePhys_addRoi, 0, 0, 1, 1)
self.ImagePhys_clearRoi = Qt.QPushButton(self.widget)
self.ImagePhys_clearRoi.setObjectName(_fromUtf8("ImagePhys_clearRoi"))
self.gridLayout_2.addWidget(self.ImagePhys_clearRoi, 1, 0, 1, 1)
self.ImagePhys_findROIs = Qt.QPushButton(self.widget)
self.ImagePhys_findROIs.setObjectName(_fromUtf8("ImagePhys_findROIs"))
self.gridLayout_2.addWidget(self.ImagePhys_findROIs, 2, 0, 1, 1)
self.horizontalLayout_3 = Qt.QHBoxLayout()
self.horizontalLayout_3.setMargin(9)
self.horizontalLayout_3.setSpacing(6)
self.horizontalLayout_3.setObjectName(_fromUtf8("horizontalLayout_3"))
self.label_13 = Qt.QLabel(self.widget)
self.label_13.setObjectName(_fromUtf8("label_13"))
self.horizontalLayout_3.addWidget(self.label_13)
self.ImagePhys_ROISize = Qt.QSpinBox(self.widget)
self.ImagePhys_ROISize.setMinimum(1)
self.ImagePhys_ROISize.setMaximum(25)
self.ImagePhys_ROISize.setProperty("value", 2)
self.ImagePhys_ROISize.setObjectName(_fromUtf8("ImagePhys_ROISize"))
self.horizontalLayout_3.addWidget(self.ImagePhys_ROISize)
self.gridLayout_2.addLayout(self.horizontalLayout_3, 3, 0, 1, 1)
self.widget1 = Qt.QWidget(self.groupBox_3)
self.widget1.setGeometry(Qt.QRect(5, 160, 161, 53))
self.widget1.setObjectName(_fromUtf8("widget1"))
self.horizontalLayout_4 = Qt.QHBoxLayout(self.widget1)
self.horizontalLayout_4.setMargin(9)
self.horizontalLayout_4.setSpacing(6)
self.horizontalLayout_4.setObjectName(_fromUtf8("horizontalLayout_4"))
self.verticalLayout = Qt.QVBoxLayout()
self.verticalLayout.setMargin(9)
self.verticalLayout.setSpacing(6)
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.label_11 = Qt.QLabel(self.widget1)
self.label_11.setAlignment(Qt.Qt.AlignCenter)
self.label_11.setObjectName(_fromUtf8("label_11"))
self.verticalLayout.addWidget(self.label_11)
self.ImagePhys_ROIThrLow = Qt.QDoubleSpinBox(self.widget1)
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Minimum,
Qt.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(
self.ImagePhys_ROIThrLow.sizePolicy().hasHeightForWidth())
self.ImagePhys_ROIThrLow.setSizePolicy(sizePolicy)
self.ImagePhys_ROIThrLow.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_ROIThrLow.setMinimum(0.01)
self.ImagePhys_ROIThrLow.setMaximum(1.0)
self.ImagePhys_ROIThrLow.setSingleStep(0.1)
self.ImagePhys_ROIThrLow.setProperty("value", 0.2)
self.ImagePhys_ROIThrLow.setObjectName(
_fromUtf8("ImagePhys_ROIThrLow"))
self.verticalLayout.addWidget(self.ImagePhys_ROIThrLow)
self.horizontalLayout_4.addLayout(self.verticalLayout)
self.verticalLayout_3 = Qt.QVBoxLayout()
self.verticalLayout_3.setMargin(9)
self.verticalLayout_3.setSpacing(6)
self.verticalLayout_3.setObjectName(_fromUtf8("verticalLayout_3"))
self.label_12 = Qt.QLabel(self.widget1)
self.label_12.setAlignment(Qt.Qt.AlignCenter)
self.label_12.setObjectName(_fromUtf8("label_12"))
self.verticalLayout_3.addWidget(self.label_12)
self.ImagePhys_ROIThrHigh = Qt.QDoubleSpinBox(self.widget1)
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Minimum,
Qt.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(
self.ImagePhys_ROIThrHigh.sizePolicy().hasHeightForWidth())
self.ImagePhys_ROIThrHigh.setSizePolicy(sizePolicy)
self.ImagePhys_ROIThrHigh.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_ROIThrHigh.setMinimum(0.1)
self.ImagePhys_ROIThrHigh.setMaximum(1.0)
self.ImagePhys_ROIThrHigh.setSingleStep(0.1)
self.ImagePhys_ROIThrHigh.setProperty("value", 1.0)
self.ImagePhys_ROIThrHigh.setObjectName(
_fromUtf8("ImagePhys_ROIThrHigh"))
self.verticalLayout_3.addWidget(self.ImagePhys_ROIThrHigh)
self.horizontalLayout_4.addLayout(self.verticalLayout_3)
self.groupBox_2 = Qt.QGroupBox(self.groupBox)
self.groupBox_2.setGeometry(Qt.QRect(205, 20, 156, 191))
self.groupBox_2.setMinimumSize(Qt.QSize(120, 190))
self.groupBox_2.setObjectName(_fromUtf8("groupBox_2"))
self.ImagePhys_RegisterStack = Qt.QPushButton(self.groupBox_2)
self.ImagePhys_RegisterStack.setGeometry(Qt.QRect(0, 15, 151, 29))
self.ImagePhys_RegisterStack.setObjectName(
_fromUtf8("ImagePhys_RegisterStack"))
self.layoutWidget3 = Qt.QWidget(self.groupBox_2)
self.layoutWidget3.setGeometry(Qt.QRect(0, 40, 141, 32))
self.layoutWidget3.setObjectName(_fromUtf8("layoutWidget3"))
self.horizontalLayout_6 = Qt.QHBoxLayout(self.layoutWidget3)
self.horizontalLayout_6.setMargin(9)
self.horizontalLayout_6.setSpacing(6)
self.horizontalLayout_6.setObjectName(_fromUtf8("horizontalLayout_6"))
self.ImagePhys_UnBleach = Qt.QPushButton(self.layoutWidget3)
self.ImagePhys_UnBleach.setCheckable(True)
self.ImagePhys_UnBleach.setObjectName(_fromUtf8("ImagePhys_UnBleach"))
self.horizontalLayout_6.addWidget(self.ImagePhys_UnBleach)
self.ImagePhys_BleachInfo = Qt.QLabel(self.layoutWidget3)
self.ImagePhys_BleachInfo.setFrameShape(Qt.QFrame.StyledPanel)
self.ImagePhys_BleachInfo.setFrameShadow(Qt.QFrame.Sunken)
self.ImagePhys_BleachInfo.setAlignment(Qt.Qt.AlignCenter)
self.ImagePhys_BleachInfo.setObjectName(
_fromUtf8("ImagePhys_BleachInfo"))
self.horizontalLayout_6.addWidget(self.ImagePhys_BleachInfo)
self.ImagePhys_SpecCalc = Qt.QPushButton(self.groupBox_2)
self.ImagePhys_SpecCalc.setGeometry(Qt.QRect(0, 70, 151, 30))
self.ImagePhys_SpecCalc.setObjectName(_fromUtf8("ImagePhys_SpecCalc"))
self.layoutWidget4 = Qt.QWidget(self.groupBox_2)
self.layoutWidget4.setGeometry(Qt.QRect(0, 95, 146, 27))
self.layoutWidget4.setObjectName(_fromUtf8("layoutWidget4"))
self.horizontalLayout = Qt.QHBoxLayout(self.layoutWidget4)
self.horizontalLayout.setMargin(9)
self.horizontalLayout.setSpacing(6)
self.horizontalLayout.setObjectName(_fromUtf8("horizontalLayout"))
self.label_7 = Qt.QLabel(self.layoutWidget4)
self.label_7.setObjectName(_fromUtf8("label_7"))
self.horizontalLayout.addWidget(self.label_7)
self.ImagePhys_SpecHPF = Qt.QDoubleSpinBox(self.layoutWidget4)
self.ImagePhys_SpecHPF.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_SpecHPF.setProperty("value", 1.0)
self.ImagePhys_SpecHPF.setObjectName(_fromUtf8("ImagePhys_SpecHPF"))
self.horizontalLayout.addWidget(self.ImagePhys_SpecHPF)
self.layoutWidget5 = Qt.QWidget(self.groupBox_2)
self.layoutWidget5.setGeometry(Qt.QRect(0, 125, 146, 27))
self.layoutWidget5.setObjectName(_fromUtf8("layoutWidget5"))
self.horizontalLayout_11 = Qt.QHBoxLayout(self.layoutWidget5)
self.horizontalLayout_11.setMargin(9)
self.horizontalLayout_11.setSpacing(6)
self.horizontalLayout_11.setObjectName(
_fromUtf8("horizontalLayout_11"))
self.label_8 = Qt.QLabel(self.layoutWidget5)
self.label_8.setObjectName(_fromUtf8("label_8"))
self.horizontalLayout_11.addWidget(self.label_8)
self.ImagePhys_SpecLPF = Qt.QDoubleSpinBox(self.layoutWidget5)
self.ImagePhys_SpecLPF.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_SpecLPF.setProperty("value", 10.0)
self.ImagePhys_SpecLPF.setObjectName(_fromUtf8("ImagePhys_SpecLPF"))
self.horizontalLayout_11.addWidget(self.ImagePhys_SpecLPF)
self.layoutWidget6 = Qt.QWidget(self.groupBox_2)
self.layoutWidget6.setGeometry(Qt.QRect(1, 155, 149, 27))
self.layoutWidget6.setObjectName(_fromUtf8("layoutWidget6"))
self.horizontalLayout_12 = Qt.QHBoxLayout(self.layoutWidget6)
self.horizontalLayout_12.setMargin(9)
self.horizontalLayout_12.setSpacing(6)
self.horizontalLayout_12.setObjectName(
_fromUtf8("horizontalLayout_12"))
self.label_10 = Qt.QLabel(self.layoutWidget6)
self.label_10.setObjectName(_fromUtf8("label_10"))
self.horizontalLayout_12.addWidget(self.label_10)
self.ImagePhys_FFTSmooth = Qt.QSpinBox(self.layoutWidget6)
self.ImagePhys_FFTSmooth.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_FFTSmooth.setMaximum(16)
self.ImagePhys_FFTSmooth.setObjectName(
_fromUtf8("ImagePhys_FFTSmooth"))
self.horizontalLayout_12.addWidget(self.ImagePhys_FFTSmooth)
self.groupBox_6 = Qt.QGroupBox(self.groupBox)
self.groupBox_6.setGeometry(Qt.QRect(205, 220, 161, 161))
self.groupBox_6.setObjectName(_fromUtf8("groupBox_6"))
self.layoutWidget7 = Qt.QWidget(self.groupBox_6)
self.layoutWidget7.setGeometry(Qt.QRect(5, 51, 152, 31))
self.layoutWidget7.setObjectName(_fromUtf8("layoutWidget7"))
self.horizontalLayout_7 = Qt.QHBoxLayout(self.layoutWidget7)
self.horizontalLayout_7.setMargin(9)
self.horizontalLayout_7.setSpacing(6)
self.horizontalLayout_7.setObjectName(_fromUtf8("horizontalLayout_7"))
self.label_3 = Qt.QLabel(self.layoutWidget7)
self.label_3.setObjectName(_fromUtf8("label_3"))
self.horizontalLayout_7.addWidget(self.label_3)
self.ImagePhys_BaseEnd = Qt.QDoubleSpinBox(self.layoutWidget7)
self.ImagePhys_BaseEnd.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_BaseEnd.setMinimum(-5000.0)
self.ImagePhys_BaseEnd.setMaximum(50000.0)
self.ImagePhys_BaseEnd.setObjectName(_fromUtf8("ImagePhys_BaseEnd"))
self.horizontalLayout_7.addWidget(self.ImagePhys_BaseEnd)
self.layoutWidget8 = Qt.QWidget(self.groupBox_6)
self.layoutWidget8.setGeometry(Qt.QRect(5, 20, 152, 27))
self.layoutWidget8.setObjectName(_fromUtf8("layoutWidget8"))
self.horizontalLayout_2 = Qt.QHBoxLayout(self.layoutWidget8)
self.horizontalLayout_2.setMargin(9)
self.horizontalLayout_2.setSpacing(6)
self.horizontalLayout_2.setObjectName(_fromUtf8("horizontalLayout_2"))
self.label = Qt.QLabel(self.layoutWidget8)
self.label.setObjectName(_fromUtf8("label"))
self.horizontalLayout_2.addWidget(self.label)
self.ImagePhys_BaseStart = Qt.QDoubleSpinBox(self.layoutWidget8)
self.ImagePhys_BaseStart.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_BaseStart.setMinimum(-5000.0)
self.ImagePhys_BaseStart.setMaximum(50000.0)
self.ImagePhys_BaseStart.setObjectName(
_fromUtf8("ImagePhys_BaseStart"))
self.horizontalLayout_2.addWidget(self.ImagePhys_BaseStart)
self.layoutWidget9 = Qt.QWidget(self.groupBox_6)
self.layoutWidget9.setGeometry(Qt.QRect(5, 85, 151, 32))
self.layoutWidget9.setObjectName(_fromUtf8("layoutWidget9"))
self.horizontalLayout_8 = Qt.QHBoxLayout(self.layoutWidget9)
self.horizontalLayout_8.setMargin(9)
self.horizontalLayout_8.setSpacing(6)
self.horizontalLayout_8.setObjectName(_fromUtf8("horizontalLayout_8"))
self.ImagePhys_CorrTool_LPF = Qt.QCheckBox(self.layoutWidget9)
self.ImagePhys_CorrTool_LPF.setEnabled(True)
self.ImagePhys_CorrTool_LPF.setLayoutDirection(Qt.Qt.RightToLeft)
self.ImagePhys_CorrTool_LPF.setObjectName(
_fromUtf8("ImagePhys_CorrTool_LPF"))
self.horizontalLayout_8.addWidget(self.ImagePhys_CorrTool_LPF)
self.ImagePhys_ImgLPF = Qt.QDoubleSpinBox(self.layoutWidget9)
self.ImagePhys_ImgLPF.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_ImgLPF.setDecimals(2)
self.ImagePhys_ImgLPF.setMinimum(0.1)
self.ImagePhys_ImgLPF.setMaximum(5000.0)
self.ImagePhys_ImgLPF.setSingleStep(1.0)
self.ImagePhys_ImgLPF.setProperty("value", 20.0)
self.ImagePhys_ImgLPF.setObjectName(_fromUtf8("ImagePhys_ImgLPF"))
self.horizontalLayout_8.addWidget(self.ImagePhys_ImgLPF)
self.layoutWidget10 = Qt.QWidget(self.groupBox_6)
self.layoutWidget10.setGeometry(Qt.QRect(5, 120, 151, 32))
self.layoutWidget10.setObjectName(_fromUtf8("layoutWidget10"))
self.horizontalLayout_9 = Qt.QHBoxLayout(self.layoutWidget10)
self.horizontalLayout_9.setMargin(9)
self.horizontalLayout_9.setSpacing(6)
self.horizontalLayout_9.setObjectName(_fromUtf8("horizontalLayout_9"))
self.ImagePhys_CorrTool_HPF = Qt.QCheckBox(self.layoutWidget10)
self.ImagePhys_CorrTool_HPF.setLayoutDirection(Qt.Qt.RightToLeft)
self.ImagePhys_CorrTool_HPF.setObjectName(
_fromUtf8("ImagePhys_CorrTool_HPF"))
self.horizontalLayout_9.addWidget(self.ImagePhys_CorrTool_HPF)
self.ImagePhys_ImgHPF = Qt.QDoubleSpinBox(self.layoutWidget10)
self.ImagePhys_ImgHPF.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.ImagePhys_ImgHPF.setSuffix(_fromUtf8(""))
self.ImagePhys_ImgHPF.setDecimals(3)
self.ImagePhys_ImgHPF.setMinimum(0.001)
self.ImagePhys_ImgHPF.setMaximum(10.0)
self.ImagePhys_ImgHPF.setSingleStep(0.2)
self.ImagePhys_ImgHPF.setProperty("value", 0.2)
self.ImagePhys_ImgHPF.setObjectName(_fromUtf8("ImagePhys_ImgHPF"))
self.horizontalLayout_9.addWidget(self.ImagePhys_ImgHPF)
self.gridLayout.addWidget(self.groupBox, 0, 0, 1, 1)
self.retranslateUi(Form)
self.ImagePhys_ROIKernel.setCurrentIndex(1)
Qt.QMetaObject.connectSlotsByName(Form)
def setupUi(self, Form):
Form.setObjectName(_fromUtf8("Form"))
Form.resize(400, 410)
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Preferred,
Qt.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(Form.sizePolicy().hasHeightForWidth())
Form.setSizePolicy(sizePolicy)
font = Qt.QFont()
font.setFamily(_fromUtf8("Arial"))
font.setPointSize(12)
Form.setFont(font)
self.gridLayout = Qt.QGridLayout(Form)
self.gridLayout.setMargin(0)
self.gridLayout.setHorizontalSpacing(10)
self.gridLayout.setVerticalSpacing(0)
self.gridLayout.setObjectName(_fromUtf8("gridLayout"))
self.groupBox = Qt.QGroupBox(Form)
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Preferred,
Qt.QSizePolicy.Minimum)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(
self.groupBox.sizePolicy().hasHeightForWidth())
self.groupBox.setSizePolicy(sizePolicy)
self.groupBox.setMinimumSize(Qt.QSize(0, 380))
self.groupBox.setAlignment(Qt.Qt.AlignCenter)
self.groupBox.setObjectName(_fromUtf8("groupBox"))
self.gridLayout_2 = Qt.QGridLayout(self.groupBox)
self.gridLayout_2.setSizeConstraint(Qt.QLayout.SetNoConstraint)
self.gridLayout_2.setMargin(0)
self.gridLayout_2.setHorizontalSpacing(5)
self.gridLayout_2.setVerticalSpacing(0)
self.gridLayout_2.setObjectName(_fromUtf8("gridLayout_2"))
self.line = Qt.QFrame(self.groupBox)
self.line.setFrameShape(Qt.QFrame.VLine)
self.line.setFrameShadow(Qt.QFrame.Sunken)
self.line.setObjectName(_fromUtf8("line"))
self.gridLayout_2.addWidget(self.line, 1, 1, 2, 1)
self.line_2 = Qt.QFrame(self.groupBox)
self.line_2.setFrameShape(Qt.QFrame.HLine)
self.line_2.setFrameShadow(Qt.QFrame.Sunken)
self.line_2.setObjectName(_fromUtf8("line_2"))
self.gridLayout_2.addWidget(self.line_2, 0, 0, 1, 1)
self.IAFuncs_widget = Qt.QWidget(self.groupBox)
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Preferred,
Qt.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(
self.IAFuncs_widget.sizePolicy().hasHeightForWidth())
self.IAFuncs_widget.setSizePolicy(sizePolicy)
self.IAFuncs_widget.setObjectName(_fromUtf8("IAFuncs_widget"))
self.IAFuncs_checkbox_TraceLabels = Qt.QCheckBox(self.IAFuncs_widget)
self.IAFuncs_checkbox_TraceLabels.setGeometry(Qt.QRect(
10, 360, 83, 18))
self.IAFuncs_checkbox_TraceLabels.setChecked(True)
self.IAFuncs_checkbox_TraceLabels.setObjectName(
_fromUtf8("IAFuncs_checkbox_TraceLabels"))
self.widget = Qt.QWidget(self.IAFuncs_widget)
self.widget.setGeometry(Qt.QRect(180, 0, 196, 371))
sizePolicy = Qt.QSizePolicy(Qt.QSizePolicy.Preferred,
Qt.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(
self.widget.sizePolicy().hasHeightForWidth())
self.widget.setSizePolicy(sizePolicy)
self.widget.setObjectName(_fromUtf8("widget"))
self.label_15 = Qt.QLabel(self.widget)
self.label_15.setGeometry(Qt.QRect(10, 10, 136, 16))
self.label_15.setObjectName(_fromUtf8("label_15"))
self.layoutWidget = Qt.QWidget(self.widget)
self.layoutWidget.setGeometry(Qt.QRect(10, 30, 176, 186))
self.layoutWidget.setObjectName(_fromUtf8("layoutWidget"))
self.formLayout = Qt.QFormLayout(self.layoutWidget)
self.formLayout.setMargin(9)
self.formLayout.setSpacing(6)
self.formLayout.setObjectName(_fromUtf8("formLayout"))
self.horizontalLayout_2 = Qt.QHBoxLayout()
self.horizontalLayout_2.setMargin(9)
self.horizontalLayout_2.setSpacing(6)
self.horizontalLayout_2.setObjectName(_fromUtf8("horizontalLayout_2"))
self.label_18 = Qt.QLabel(self.layoutWidget)
self.label_18.setObjectName(_fromUtf8("label_18"))
self.horizontalLayout_2.addWidget(self.label_18)
self.smc_Kd = Qt.QDoubleSpinBox(self.layoutWidget)
self.smc_Kd.setAlignment(Qt.Qt.AlignRight | Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.smc_Kd.setDecimals(0)
self.smc_Kd.setMinimum(0.0)
self.smc_Kd.setMaximum(5000.0)
self.smc_Kd.setProperty("value", 345.0)
self.smc_Kd.setObjectName(_fromUtf8("smc_Kd"))
self.horizontalLayout_2.addWidget(self.smc_Kd)
self.formLayout.setLayout(1, Qt.QFormLayout.SpanningRole,
self.horizontalLayout_2)
self.horizontalLayout_3 = Qt.QHBoxLayout()
self.horizontalLayout_3.setMargin(9)
self.horizontalLayout_3.setSpacing(6)
self.horizontalLayout_3.setObjectName(_fromUtf8("horizontalLayout_3"))
self.label_19 = Qt.QLabel(self.layoutWidget)
self.label_19.setObjectName(_fromUtf8("label_19"))
self.horizontalLayout_3.addWidget(self.label_19)
self.smc_TCa = Qt.QDoubleSpinBox(self.layoutWidget)
self.smc_TCa.setAlignment(Qt.Qt.AlignRight | Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.smc_TCa.setDecimals(3)
self.smc_TCa.setMinimum(0.001)
self.smc_TCa.setMaximum(5.0)
self.smc_TCa.setSingleStep(0.01)
self.smc_TCa.setProperty("value", 0.025)
self.smc_TCa.setObjectName(_fromUtf8("smc_TCa"))
self.horizontalLayout_3.addWidget(self.smc_TCa)
self.formLayout.setLayout(2, Qt.QFormLayout.SpanningRole,
self.horizontalLayout_3)
self.horizontalLayout_4 = Qt.QHBoxLayout()
self.horizontalLayout_4.setMargin(9)
self.horizontalLayout_4.setSpacing(6)
self.horizontalLayout_4.setObjectName(_fromUtf8("horizontalLayout_4"))
self.label_17 = Qt.QLabel(self.layoutWidget)
self.label_17.setObjectName(_fromUtf8("label_17"))
self.horizontalLayout_4.addWidget(self.label_17)
self.smc_C0 = Qt.QDoubleSpinBox(self.layoutWidget)
self.smc_C0.setAlignment(Qt.Qt.AlignRight | Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.smc_C0.setDecimals(3)
self.smc_C0.setMinimum(0.01)
self.smc_C0.setMaximum(1000.0)
self.smc_C0.setObjectName(_fromUtf8("smc_C0"))
self.horizontalLayout_4.addWidget(self.smc_C0)
self.formLayout.setLayout(3, Qt.QFormLayout.SpanningRole,
self.horizontalLayout_4)
self.horizontalLayout = Qt.QHBoxLayout()
self.horizontalLayout.setMargin(9)
self.horizontalLayout.setSpacing(6)
self.horizontalLayout.setObjectName(_fromUtf8("horizontalLayout"))
self.label_16 = Qt.QLabel(self.layoutWidget)
self.label_16.setObjectName(_fromUtf8("label_16"))
self.horizontalLayout.addWidget(self.label_16)
self.smc_Amplitude = Qt.QDoubleSpinBox(self.layoutWidget)
self.smc_Amplitude.setAlignment(Qt.Qt.AlignRight | Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.smc_Amplitude.setMaximum(1000.0)
self.smc_Amplitude.setSingleStep(0.1)
self.smc_Amplitude.setProperty("value", 1.0)
self.smc_Amplitude.setObjectName(_fromUtf8("smc_Amplitude"))
self.horizontalLayout.addWidget(self.smc_Amplitude)
self.formLayout.setLayout(0, Qt.QFormLayout.SpanningRole,
self.horizontalLayout)
self.IAFuncs_Analysis_smcAnalyze = Qt.QPushButton(self.layoutWidget)
self.IAFuncs_Analysis_smcAnalyze.setObjectName(
_fromUtf8("IAFuncs_Analysis_smcAnalyze"))
self.formLayout.setWidget(5, Qt.QFormLayout.LabelRole,
self.IAFuncs_Analysis_smcAnalyze)
self.IAFuncs_Analysis_SpikeXCorr = Qt.QPushButton(self.layoutWidget)
self.IAFuncs_Analysis_SpikeXCorr.setObjectName(
_fromUtf8("IAFuncs_Analysis_SpikeXCorr"))
self.formLayout.setWidget(5, Qt.QFormLayout.FieldRole,
self.IAFuncs_Analysis_SpikeXCorr)
self.widget1 = Qt.QWidget(self.widget)
self.widget1.setGeometry(Qt.QRect(10, 220, 176, 140))
self.widget1.setObjectName(_fromUtf8("widget1"))
self.verticalLayout = Qt.QVBoxLayout(self.widget1)
self.verticalLayout.setMargin(9)
self.verticalLayout.setSpacing(6)
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.label_13 = Qt.QLabel(self.widget1)
self.label_13.setObjectName(_fromUtf8("label_13"))
self.verticalLayout.addWidget(self.label_13)
self.line_4 = Qt.QFrame(self.widget1)
self.line_4.setLineWidth(2)
self.line_4.setFrameShape(Qt.QFrame.HLine)
self.line_4.setFrameShadow(Qt.QFrame.Sunken)
self.line_4.setObjectName(_fromUtf8("line_4"))
self.verticalLayout.addWidget(self.line_4)
self.IAFuncs_Analysis_AFFT = Qt.QPushButton(self.widget1)
self.IAFuncs_Analysis_AFFT.setText(_fromUtf8("Avg FFT"))
self.IAFuncs_Analysis_AFFT.setObjectName(
_fromUtf8("IAFuncs_Analysis_AFFT"))
self.verticalLayout.addWidget(self.IAFuncs_Analysis_AFFT)
self.IAFuncs_Analysis_AFFT_Individual = Qt.QPushButton(self.widget1)
self.IAFuncs_Analysis_AFFT_Individual.setObjectName(
_fromUtf8("IAFuncs_Analysis_AFFT_Individual"))
self.verticalLayout.addWidget(self.IAFuncs_Analysis_AFFT_Individual)
self.IAFuncs_Analysis_FourierMap = Qt.QPushButton(self.widget1)
self.IAFuncs_Analysis_FourierMap.setObjectName(
_fromUtf8("IAFuncs_Analysis_FourierMap"))
self.verticalLayout.addWidget(self.IAFuncs_Analysis_FourierMap)
self.layoutWidget1 = Qt.QWidget(self.IAFuncs_widget)
self.layoutWidget1.setGeometry(Qt.QRect(10, 110, 171, 221))
self.layoutWidget1.setObjectName(_fromUtf8("layoutWidget1"))
self.formLayout_4 = Qt.QFormLayout(self.layoutWidget1)
self.formLayout_4.setFieldGrowthPolicy(
Qt.QFormLayout.FieldsStayAtSizeHint)
self.formLayout_4.setMargin(9)
self.formLayout_4.setSpacing(0)
self.formLayout_4.setObjectName(_fromUtf8("formLayout_4"))
self.IAFuncs_Analysis_AXCorr_Individual = Qt.QPushButton(
self.layoutWidget1)
self.IAFuncs_Analysis_AXCorr_Individual.setObjectName(
_fromUtf8("IAFuncs_Analysis_AXCorr_Individual"))
self.formLayout_4.setWidget(1, Qt.QFormLayout.SpanningRole,
self.IAFuncs_Analysis_AXCorr_Individual)
self.IAFuncs_Analysis_UnbiasedXC = Qt.QPushButton(self.layoutWidget1)
self.IAFuncs_Analysis_UnbiasedXC.setObjectName(
_fromUtf8("IAFuncs_Analysis_UnbiasedXC"))
self.formLayout_4.setWidget(2, Qt.QFormLayout.SpanningRole,
self.IAFuncs_Analysis_UnbiasedXC)
self.IAFuncs_Distance = Qt.QPushButton(self.layoutWidget1)
self.IAFuncs_Distance.setObjectName(_fromUtf8("IAFuncs_Distance"))
self.formLayout_4.setWidget(3, Qt.QFormLayout.SpanningRole,
self.IAFuncs_Distance)
self.IAFuncs_DistanceStrength = Qt.QPushButton(self.layoutWidget1)
self.IAFuncs_DistanceStrength.setObjectName(
_fromUtf8("IAFuncs_DistanceStrength"))
self.formLayout_4.setWidget(4, Qt.QFormLayout.SpanningRole,
self.IAFuncs_DistanceStrength)
self.formLayout_3 = Qt.QFormLayout()
self.formLayout_3.setMargin(9)
self.formLayout_3.setSpacing(6)
self.formLayout_3.setObjectName(_fromUtf8("formLayout_3"))
self.label = Qt.QLabel(self.layoutWidget1)
self.label.setObjectName(_fromUtf8("label"))
self.formLayout_3.setWidget(0, Qt.QFormLayout.LabelRole, self.label)
self.IAFuncs_XCorrThreshold = Qt.QDoubleSpinBox(self.layoutWidget1)
self.IAFuncs_XCorrThreshold.setAlignment(Qt.Qt.AlignRight
| Qt.Qt.AlignTrailing
| Qt.Qt.AlignVCenter)
self.IAFuncs_XCorrThreshold.setMaximum(1.0)
self.IAFuncs_XCorrThreshold.setSingleStep(0.02)
self.IAFuncs_XCorrThreshold.setProperty("value", 0.25)
self.IAFuncs_XCorrThreshold.setObjectName(
_fromUtf8("IAFuncs_XCorrThreshold"))
self.formLayout_3.setWidget(0, Qt.QFormLayout.FieldRole,
self.IAFuncs_XCorrThreshold)
self.formLayout_4.setLayout(5, Qt.QFormLayout.SpanningRole,
self.formLayout_3)
self.IAFuncs_NetworkGraph = Qt.QPushButton(self.layoutWidget1)
self.IAFuncs_NetworkGraph.setObjectName(
_fromUtf8("IAFuncs_NetworkGraph"))
self.formLayout_4.setWidget(6, Qt.QFormLayout.SpanningRole,
self.IAFuncs_NetworkGraph)
self.IAFuncs_DistanceStrengthPrint = Qt.QPushButton(self.layoutWidget1)
self.IAFuncs_DistanceStrengthPrint.setObjectName(
_fromUtf8("IAFuncs_DistanceStrengthPrint"))
self.formLayout_4.setWidget(7, Qt.QFormLayout.SpanningRole,
self.IAFuncs_DistanceStrengthPrint)
self.IAFuncs_MatplotlibCheckBox = Qt.QCheckBox(self.layoutWidget1)
self.IAFuncs_MatplotlibCheckBox.setObjectName(
_fromUtf8("IAFuncs_MatplotlibCheckBox"))
self.formLayout_4.setWidget(8, Qt.QFormLayout.FieldRole,
self.IAFuncs_MatplotlibCheckBox)
self.IAFuncs_Analysis_AXCorr = Qt.QPushButton(self.layoutWidget1)
self.IAFuncs_Analysis_AXCorr.setObjectName(
_fromUtf8("IAFuncs_Analysis_AXCorr"))
self.formLayout_4.setWidget(0, Qt.QFormLayout.SpanningRole,
self.IAFuncs_Analysis_AXCorr)
self.widget2 = Qt.QWidget(self.IAFuncs_widget)
self.widget2.setGeometry(Qt.QRect(26, 13, 134, 96))
self.widget2.setObjectName(_fromUtf8("widget2"))
self.verticalLayout_2 = Qt.QVBoxLayout(self.widget2)
self.verticalLayout_2.setMargin(9)
self.verticalLayout_2.setSpacing(6)
self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
self.label_14 = Qt.QLabel(self.widget2)
self.label_14.setObjectName(_fromUtf8("label_14"))
self.verticalLayout_2.addWidget(self.label_14)
self.IAFuncs_AnalogRadioBtn = Qt.QRadioButton(self.widget2)
self.IAFuncs_AnalogRadioBtn.setChecked(True)
self.IAFuncs_AnalogRadioBtn.setObjectName(
_fromUtf8("IAFuncs_AnalogRadioBtn"))
self.verticalLayout_2.addWidget(self.IAFuncs_AnalogRadioBtn)
self.IAFuncs_DigitalRadioBtn = Qt.QRadioButton(self.widget2)
self.IAFuncs_DigitalRadioBtn.setObjectName(
_fromUtf8("IAFuncs_DigitalRadioBtn"))
self.verticalLayout_2.addWidget(self.IAFuncs_DigitalRadioBtn)
self.IAFuncs_GetCSVFile = Qt.QPushButton(self.widget2)
self.IAFuncs_GetCSVFile.setObjectName(_fromUtf8("IAFuncs_GetCSVFile"))
self.verticalLayout_2.addWidget(self.IAFuncs_GetCSVFile)
self.gridLayout_2.addWidget(self.IAFuncs_widget, 1, 0, 2, 1)
self.gridLayout.addWidget(self.groupBox, 0, 0, 1, 1)
self.retranslateUi(Form)
Qt.QMetaObject.connectSlotsByName(Form)
def __init__(self, mod):
Qt.QWidget.__init__(self)
self.mod = weakref.ref(mod)
self.view = mod.view
# ROI state variables
self.lastPlotTime = None
self.ROIs = []
self.plotCurves = []
# Set up UI
self.roiLayout = Qt.QGridLayout()
self.roiLayout.setSpacing(0)
self.roiLayout.setContentsMargins(0,0,0,0)
self.setLayout(self.roiLayout)
# rect
rectPath = Qt.QPainterPath()
rectPath.addRect(0, 0, 1, 1)
self.rectBtn = pg.PathButton(path=rectPath)
# ellipse
ellPath = Qt.QPainterPath()
ellPath.addEllipse(0, 0, 1, 1)
self.ellipseBtn = pg.PathButton(path=ellPath)
# polygon
polyPath = Qt.QPainterPath()
polyPath.moveTo(0,0)
polyPath.lineTo(2,3)
polyPath.lineTo(3,1)
polyPath.lineTo(5,0)
polyPath.lineTo(2, -2)
polyPath.lineTo(0,0)
self.polygonBtn = pg.PathButton(path=polyPath)
# ruler
polyPath = Qt.QPainterPath()
polyPath.moveTo(0, 0)
polyPath.lineTo(3, -2)
polyPath.moveTo(0, 0)
polyPath.lineTo(3, 0)
polyPath.moveTo(1, 0)
polyPath.arcTo(-1, -1, 2, 2, 0, 33.69)
for i in range(5):
x = i * 3./4.
y = x * -2./3.
polyPath.moveTo(x, y)
polyPath.lineTo(x-0.2, y-0.3)
self.rulerBtn = pg.PathButton(path=polyPath)
self.roiLayout.addWidget(self.rectBtn, 0, 0)
self.roiLayout.addWidget(self.ellipseBtn, 0, 1)
self.roiLayout.addWidget(self.polygonBtn, 1, 0)
self.roiLayout.addWidget(self.rulerBtn, 1, 1)
self.roiTimeSpin = pg.SpinBox(value=5.0, suffix='s', siPrefix=True, dec=True, step=0.5, bounds=(0,None))
self.roiLayout.addWidget(self.roiTimeSpin, 2, 0, 1, 2)
self.roiPlotCheck = Qt.QCheckBox('Plot')
self.roiLayout.addWidget(self.roiPlotCheck, 3, 0, 1, 2)
self.roiPlot = pg.PlotWidget()
self.roiLayout.addWidget(self.roiPlot, 0, 2, self.roiLayout.rowCount(), 1)
self.rectBtn.clicked.connect(lambda: self.addROI('rect'))
self.ellipseBtn.clicked.connect(lambda: self.addROI('ellipse'))
self.polygonBtn.clicked.connect(lambda: self.addROI('polygon'))
self.rulerBtn.clicked.connect(lambda: self.addROI('ruler'))
def setCurrentFile(self, file):
#print "=============== set current file ============"
if file is self.current:
return
if file is None:
self.clear()
self.current = None
return
self.current = file
self.clear()
## Decide on the list of fields to display
info = file.info()
infoKeys = list(info.keys())
fields = self.manager.suggestedDirFields(file)
## Generate fields, populate if data exists
#print "Add %d rows.." % len(fields)
# each field has a number of options that can be set by providing
# either a dict or a tuple (where the order of arguments determine their meaning).
fieldTypeArgs = {
'text': ['numLines', 'default'],
'string': ['default'],
'list': ['values', 'default'],
'bool': ['default'],
}
for fieldName, fieldOpts in fields.items():
if fieldName in infoKeys:
infoKeys.remove(fieldName)
# a single value is interpreted as the first element of a tuple
if not isinstance(fieldOpts, (dict, tuple)):
fieldOpts = (fieldOpts, )
if isinstance(fieldOpts, tuple):
fieldTyp = fieldOpts[0]
# convert to dict based on order of args
fieldOpts = {
fieldTypeArgs[fieldTyp][i - 1]: fieldOpts[i]
for i in range(1, len(fieldOpts))
}
fieldOpts['type'] = fieldTyp
fieldTyp = fieldOpts['type']
# now use args to create a widget for this field
value = info.get(fieldName, fieldOpts.get('default', None))
if fieldTyp == 'text':
w = Qt.QTextEdit()
w.setTabChangesFocus(True)
if value is not None:
w.setText(value)
elif fieldTyp == 'string':
w = Qt.QLineEdit()
if value is not None:
w.setText(value)
elif fieldTyp == 'list':
w = Qt.QComboBox()
w.addItems([''] + fieldOpts['values'])
w.setEditable(True)
if value is not None:
w.lineEdit().setText(value)
elif fieldTyp == 'bool':
w = Qt.QCheckBox()
if value is not None:
w.setChecked(value)
else:
raise Exception(
"Don't understand info type '%s' (parameter %s)" %
(fieldTyp, fieldName))
self.addRow(fieldName, w)
## Add fields for any other keys that happen to be present
#print "Add %d rows.." % len(infoKeys)
for f in infoKeys:
if isinstance(info[f], dict):
w = DictView(info[f])
else:
s = str(info[f])
if isinstance(f, six.string_types) and 'time' in f.lower(
) and info[f] > 1e9 and info[
f] < 2e9: ## probably this is a timestamp
try:
t0 = file.parent().info()['__timestamp__']
dt = " [elapsed = %0.3f s]" % (info[f] - t0)
except:
dt = ""
s = time.strftime("%Y.%m.%d %H:%M:%S",
time.localtime(float(s))) + dt
w = Qt.QLabel(s)
if type(f) is tuple:
f = '.'.join(f)
f = str(f).replace('__', '')
self.addRow(f, w)
def __init__(self, host):
AnalysisModule.__init__(self, host)
fcpath = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"flowcharts")
confpath = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"configs")
self.confWidget = Qt.QWidget()
self.confLoader = ConfLoader(self, confpath)
self.fileLoader = DataLoader(self, host.dataManager())
self.addPlotBtn = Qt.QPushButton('Add Plot')
self.processWidget = Qt.QWidget()
self.processLayout = Qt.QHBoxLayout()
self.processWidget.setLayout(self.processLayout)
self.processBtn = Qt.QPushButton('Process')
self.processCheck = Qt.QCheckBox('Auto')
self.processLayout.addWidget(self.processBtn)
self.processLayout.addWidget(self.processCheck)
self.confLayout = Qt.QGridLayout()
self.confWidget.setLayout(self.confLayout)
self.confLayout.addWidget(self.confLoader, 0, 0)
self.confLayout.addWidget(self.addPlotBtn, 1, 0)
self.confLayout.addWidget(self.processWidget, 2, 0)
self.plots = []
self.params = None
self.data = None
self.flowchart = fc.Flowchart(filePath=fcpath)
self.flowchart.addInput('Input')
self.flowchart.addOutput('Output')
#self.flowchart.sigChartLoaded.connect(self.connectPlots)
# Setup basic GUI
self._elements_ = OrderedDict([
('Configuration', {
'type': 'ctrl',
'object': self.confWidget,
'size': (200, 200)
}),
('File Loader', {
'type': 'ctrl',
'object': self.fileLoader,
'size': (200, 300),
'pos': ('bottom', 'Configuration')
}),
('Flowchart', {
'type': 'ctrl',
'object': self.flowchart.widget(),
'size': (300, 500),
'pos': ('right', )
}),
('Results', {
'type': 'table',
'size': (500, 200),
'pos': 'bottom'
}),
])
self.initializeElements()
self.addPlotBtn.clicked.connect(self.addPlotClicked)
self.processBtn.clicked.connect(self.processClicked)
self.flowchart.sigOutputChanged.connect(self.outputChanged)
self.fileLoader.sigFileLoaded.connect(self.fileLoaded)
self.fileLoader.sigSelectedFileChanged.connect(self.fileSelected)
#cw = Qt.QWidget()
layout = pg.LayoutWidget()
#layout = Qt.QGridLayout()
#layout.setContentsMargins(0,0,0,0)
#layout.setSpacing(0)
#cw.setLayout(layout)
win.setCentralWidget(layout)
cellCombo = Qt.QComboBox()
cellCombo.setSizeAdjustPolicy(cellCombo.AdjustToContents)
layout.addWidget(cellCombo)
reloadBtn = Qt.QPushButton('reload')
layout.addWidget(reloadBtn)
separateCheck = Qt.QCheckBox("color pre/post")
layout.addWidget(separateCheck)
colorCheck = Qt.QCheckBox("color y position")
layout.addWidget(colorCheck)
errLimitSpin = pg.SpinBox(value=0.7, step=0.1)
layout.addWidget(errLimitSpin)
lengthRatioLimitSpin = pg.SpinBox(value=1.5, step=0.1)
layout.addWidget(lengthRatioLimitSpin)
postRgnStartSpin = pg.SpinBox(value=0.500,
step=0.01,
siPrefix=True,
suffix='s')
def __init__(self, host):
AnalysisModule.__init__(self, host)
self.ChR2 = ChR2.ChR2() # create instance of the analysis
fcpath = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"flowcharts")
confpath = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"configs")
self.dbIdentity = "ChR2TraceAnalysis" ## how we identify to the database; this determines which tables we own
self._sizeHint = (1024, 800) # try to establish size of window
self.confWidget = Qt.QWidget()
self.confLoader = ConfLoader(self, confpath)
self.fileLoader = DataLoader(self, host.dataManager())
self.addPlotBtn = Qt.QPushButton('Add Plot')
self.processWidget = Qt.QWidget()
self.processLayout = Qt.QGridLayout()
self.processWidget.setLayout(self.processLayout)
self.processProtocolBtn = Qt.QPushButton('Process Protocol')
self.processSliceBtn = Qt.QPushButton('Process Slice')
self.processCellBtn = Qt.QPushButton('Process Cell')
self.processCheck = Qt.QCheckBox('Auto')
self.processLayout.addWidget(self.processSliceBtn, 0, 0)
self.processLayout.addWidget(self.processCellBtn, 1, 0)
self.processLayout.addWidget(self.processProtocolBtn, 2, 0)
self.processLayout.addWidget(self.processCheck, 3, 0)
self.confWidget = Qt.QWidget()
self.confLayout = Qt.QGridLayout()
self.confWidget.setLayout(self.confLayout)
self.confLayout.addWidget(self.confLoader, 0, 0)
self.confLayout.addWidget(self.addPlotBtn, 1, 0)
self.confLayout.addWidget(self.processWidget, 2, 0)
self.plots = []
self.params = None
self.data = None
## setup map DB ctrl
#self.dbCtrl = DBCtrl(self, self.dbIdentity)
self.flowchart = fc.Flowchart(filePath=fcpath)
self.flowchart.addInput('Input')
self.flowchart.addOutput('Output')
#self.flowchart.sigChartLoaded.connect(self.connectPlots)
## create event detector
fcDir = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"detector_fc")
# self.detector = EventDetector.EventDetector(host, flowchartDir=fcDir, dbIdentity=self.dbIdentity+'.events')
self.flowchart.sigChartLoaded.connect(self.connectPlots)
#elems = self.detector.listElements()
#print elems
# Setup basic GUI
self._elements_ = OrderedDict([
('Configuration', {
'type': 'ctrl',
'object': self.confWidget,
'size': (200, 200)
}),
('File Loader', {
'type': 'ctrl',
'object': self.fileLoader,
'size': (200, 300),
'pos': ('above', 'Configuration')
}),
('Flowchart', {
'type': 'ctrl',
'object': self.flowchart.widget(),
'size': (400, 500),
'pos': ('right', 'Configuration')
}),
('Data Plot', {
'type': 'plot',
'pos': ('bottom', 'Flowchart'),
'size': (400, 300)
}),
('PSP Plot', {
'type': 'plot',
'pos': ('bottom', 'Data Plot'),
'size': (400, 300)
}),
('Scatter Plot1', {
'type': 'plot',
'pos': ('right', ),
'size': (300, 300)
}),
('Scatter Plot2', {
'type': 'plot',
'pos': ('bottom', 'Scatter Plot1'),
'size': (300, 300)
}),
('Scatter Plot3', {
'type': 'plot',
'pos': ('bottom', 'Scatter Plot2'),
'size': (300, 300)
}),
('Results', {
'type': 'table',
'size': (500, 200),
'pos': 'bottom'
}),
])
self.initializeElements()
self.addPlotBtn.clicked.connect(self.addPlotClicked)
self.processSliceBtn.clicked.connect(self.processSliceClicked)
self.processCellBtn.clicked.connect(self.processCellClicked)
self.processProtocolBtn.clicked.connect(self.processProtocolClicked)
self.flowchart.sigOutputChanged.connect(self.outputChanged)
self.fileLoader.sigFileLoaded.connect(self.fileLoaded)
self.fileLoader.sigSelectedFileChanged.connect(self.fileSelected)
def __init__(self, host):
AnalysisModule.__init__(self, host)
if self.dataModel is None:
raise Exception(
"Photostim analysis module requires a data model, but none is loaded yet."
)
self.dbIdentity = "Photostim" ## how we identify to the database; this determines which tables we own
self.selectedSpot = None
## setup analysis flowchart
modPath = os.path.abspath(os.path.split(__file__)[0])
flowchartDir = os.path.join(modPath, "analysis_fc")
self.flowchart = Flowchart(filePath=flowchartDir)
self.flowchart.addInput('events')
self.flowchart.addInput('regions')
self.flowchart.addInput('fileHandle')
self.flowchart.addOutput('dataOut')
self.analysisCtrl = self.flowchart.widget()
## color mapper
self.mapper = ColorMapper.ColorMapper(
filePath=os.path.join(modPath, "colormaps"))
self.mapCtrl = Qt.QWidget()
self.mapLayout = Qt.QVBoxLayout()
self.mapCtrl.setLayout(self.mapLayout)
self.mapLayout.splitter = Qt.QSplitter()
self.mapLayout.splitter.setOrientation(Qt.Qt.Vertical)
self.mapLayout.splitter.setContentsMargins(0, 0, 0, 0)
self.mapLayout.addWidget(self.mapLayout.splitter)
self.mapLayout.splitter.addWidget(self.analysisCtrl)
#self.mapLayout.splitter.addWidget(Qt.QSplitter())
self.mapLayout.splitter.addWidget(self.mapper)
#self.mapLayout.splitter.addWidget(self.recolorBtn)
self.recolorLayout = Qt.QHBoxLayout()
self.recolorWidget = Qt.QWidget()
self.mapLayout.splitter.addWidget(self.recolorWidget)
self.recolorWidget.setLayout(self.recolorLayout)
self.recolorBtn = Qt.QPushButton('Recolor')
self.recolorLayout.addWidget(self.recolorBtn)
self.recolorParallelCheck = Qt.QCheckBox('Parallel')
self.recolorParallelCheck.setChecked(True)
self.recolorLayout.addWidget(self.recolorParallelCheck)
## scatter plot
self.scatterPlot = ScatterPlotter()
self.scatterPlot.sigClicked.connect(self.scatterPlotClicked)
## setup map DB ctrl
self.dbCtrl = DBCtrl(self, self.dbIdentity)
## storage for map data
#self.scanItems = {}
self.scans = []
#self.seriesScans = {}
self.maps = []
## create event detector
fcDir = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"detector_fc")
self.detector = EventDetector.EventDetector(
host, flowchartDir=fcDir, dbIdentity=self.dbIdentity + '.events')
## override some of its elements
self.detector.setElement('File Loader', self)
self.detector.setElement('Database', self.dbCtrl)
## Create element list, importing some gui elements from event detector
elems = self.detector.listElements()
self._elements_ = OrderedDict([
('Database', {
'type': 'ctrl',
'object': self.dbCtrl,
'size': (300, 600)
}),
('Scatter Plot', {
'type': 'ctrl',
'object': self.scatterPlot,
'pos': ('right', ),
'size': (700, 400)
}),
('Canvas', {
'type': 'canvas',
'pos': ('above', 'Scatter Plot'),
'size': (700, 400),
'allowTransforms': False,
'hideCtrl': True,
'args': {
'name': 'Photostim'
}
}),
#('Maps', {'type': 'ctrl', 'pos': ('bottom', 'Database'), 'size': (200,200), 'object': self.mapDBCtrl}),
('Map Opts', {
'type': 'ctrl',
'object': self.mapCtrl,
'pos': ('above', 'Database'),
'size': (300, 600)
}),
('Detection Opts',
elems['Detection Opts'].setParams(pos=('above', 'Map Opts'),
size=(300, 600))),
('File Loader', {
'type': 'fileInput',
'size': (300, 300),
'pos': ('above', 'Detection Opts'),
'host': self,
'showFileTree': False
}),
('Data Plot', elems['Data Plot'].setParams(pos=('bottom',
'Canvas'),
size=(700, 200))),
('Filter Plot', elems['Filter Plot'].setParams(pos=('bottom',
'Data Plot'),
size=(700, 200))),
('Event Table',
elems['Output Table'].setParams(pos=('below', 'Filter Plot'),
size=(700, 200))),
('Stats', {
'type': 'dataTree',
'size': (700, 200),
'pos': ('below', 'Event Table')
}),
])
self.initializeElements()
try:
## load default chart
self.flowchart.loadFile(os.path.join(flowchartDir, 'default.fc'))
except:
debug.printExc('Error loading default flowchart:')
self.detector.flowchart.sigOutputChanged.connect(
self.detectorOutputChanged)
self.flowchart.sigOutputChanged.connect(self.analyzerOutputChanged)
self.detector.flowchart.sigStateChanged.connect(
self.detectorStateChanged)
self.flowchart.sigStateChanged.connect(self.analyzerStateChanged)
self.recolorBtn.clicked.connect(self.recolor)
