def aggregate(self, experimentID, user):
"""
Aggregate the GFP scores and send report
"""
gfps = GFP.objects.filter(experiment_id=experimentID)
log.debug("RUNNING aggregate: initialize method")
algorithm = Algorithm()
algorithm = algorithm.getAlgorithm("NV")
algorithm.loadDataAggregate()
algorithm.aggregate(gfps, experimentID)
experiment = Experiment.objects.filter(id=experimentID)
log.debug("RUNNING aggregate: start report")
report = Report(experimentID)
filename = REPORT_DIR + "sapling_gfp_report_" + slugify(experiment[0].Name) + "_" + str(experimentID) + ".pdf"
report.generateReport(filename)
del report
subject = "SAPLING report: " + experiment[0].Name
body = "Dear " + user.first_name + " "+ user.last_name + ",\n\n"
body += "Please find attached a report of your experiment " + experiment[0].Name + ".\n\n"
body += "Regards,\n SAPLING"
email = EmailMessage(subject=subject, body=body, from_email="*****@*****.**", to=[user.email])
reportname = "sapling_gfp_report_" + slugify(experiment[0].Name) + "_" + str(experimentID) + ".pdf"
handle = open(filename, 'rb')
email.attach(reportname, handle.read(), "application/pdf")
enrichname = "Enrichment_GeneList_GO_" + str(experimentID) + ".csv"
filename = REPORT_DIR + "Enrichment_GeneList_GO_" + str(experimentID) + ".csv"
handle = open(filename, 'rb')
email.attach(enrichname, handle.read(), "text/csv")
email.send()
handle.close()
log.debug("DONE Aggregate")
