class Migration(migrations.Migration):
initial = True
dependencies = []
operations = [
migrations.CreateModel(
name='sentimentText',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('residentialAddress',
models.TextField(
max_length=512,
validators=[
analysis.models.validate_numeric,
django.core.validators.MinLengthValidator(10)
])),
],
),
]
class Migration(migrations.Migration):
initial = True
dependencies = []
operations = [
migrations.CreateModel(
name='AnalysisTest',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('test_file',
models.FileField(
upload_to=analysis.models.change_test_file_name,
verbose_name='Analysis file')),
('predicted_file',
models.FileField(
upload_to=analysis.models.change_predicted_file_name,
verbose_name='Analysis predicted file')),
],
),
]
class Migration(migrations.Migration):
dependencies = [
('entry', '0029_auto_20210112_0935'),
('analysis', '0002_auto_20210409_1021'),
]
operations = [
migrations.CreateModel(
name='DiscardedEntry',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('tag',
models.IntegerField(choices=[(0, 'Redundant'), (
1, 'Too old'), (2, 'Anecdotal'), (3, 'Outlier')])),
('analysis_pillar',
models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
to='analysis.AnalysisPillar')),
('entry',
models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
to='entry.Entry')),
],
),
migrations.AlterUniqueTogether(
name='discardedentry',
unique_together={('entry', 'analysis_pillar')},
),
]
class Migration(migrations.Migration):
initial = True
dependencies = [
('auth', '0011_update_proxy_permissions'),
]
operations = [
migrations.CreateModel(
name='User',
fields=[
('password',
models.CharField(max_length=128, verbose_name='password')),
('last_login',
models.DateTimeField(blank=True,
null=True,
verbose_name='last login')),
('is_superuser',
models.BooleanField(
default=False,
help_text=
'Designates that this user has all permissions without explicitly assigning them.',
verbose_name='superuser status')),
('id',
models.IntegerField(primary_key=True,
serialize=False,
verbose_name='サイトID')),
('email',
models.EmailField(max_length=254,
unique=True,
verbose_name='Emailアドレス')),
('username',
models.CharField(default='',
help_text='30文字以内で入力してください。',
max_length=30,
verbose_name='ユーザー名')),
('thumbnail',
models.ImageField(
default='./thumbnail/noimage.png',
upload_to=analysis.models.get_thumbnail_path,
verbose_name='サムネイル画像')),
('self_intro',
models.CharField(default='',
help_text='2,000文字以内で入力してください。',
max_length=2000,
verbose_name='説明文')),
('major_category',
models.CharField(choices=[('00', '-'), ('11', '山岳'),
('12', '高原・湿原・原野'), ('13', '湖沼'),
('14', '河川・渓谷'), ('15', '滝'),
('16', '海岸・岬'), ('17', '岩石・洞窟'),
('18', '動物'), ('19', '植物'),
('21', '史跡'), ('22', '神社・寺院・教会'),
('23', '城跡・宮殿'), ('24', '集落・街'),
('25', '郷土景観'), ('26', '庭園・公園'),
('27', '建造物'),
('28', '年中行事（祭り・伝統行事）'),
('29', '動植物園・水族館'),
('30', '博物館・美術館'),
('31', 'テーマ公園・テーマ施設'), ('32', '温泉'),
('33', '食'), ('34', '芸能・イベント')],
default='00',
max_length=4,
verbose_name='カテゴリー分類')),
('address_prefecture',
models.CharField(default='',
help_text='※東京都',
max_length=20,
verbose_name='都道府県')),
('address_city',
models.CharField(default='',
help_text='※港区芝公園',
max_length=50,
verbose_name='市区町村')),
('address_street',
models.CharField(default='',
help_text='※4-2-8',
max_length=50,
verbose_name='番地')),
('latitude',
models.FloatField(blank=True,
max_length=4,
null=True,
verbose_name='緯度')),
('longitude',
models.FloatField(blank=True,
max_length=4,
null=True,
verbose_name='経度')),
('telephone',
models.CharField(
max_length=15,
validators=[
django.core.validators.RegexValidator(
message='"09012345678"のようにハイフンなしの形式で入力してください。',
regex='^[0-9]+$')
],
verbose_name='電話番号')),
('url',
models.CharField(default='',
help_text='200文字以内で入力してください。',
max_length=200,
verbose_name='URL')),
('entrance_fee',
models.CharField(default='',
help_text='200文字以内で入力してください。',
max_length=200,
verbose_name='費用')),
('business_hours',
models.CharField(default='',
help_text='200文字以内で入力してください。',
max_length=200,
verbose_name='営業時間')),
('rating_sum',
models.FloatField(default=0, verbose_name='レビュー合計')),
('rating_amount',
models.IntegerField(default=0, verbose_name='レビュー数')),
('holiday',
models.CharField(default='',
help_text='50文字以内で入力してください。',
max_length=50,
verbose_name='定休日')),
('knn_model',
models.FileField(
blank=True,
null=True,
upload_to=analysis.models.get_infference_model_path,
verbose_name='KNNモデル')),
('exhibit_csv',
models.FileField(
blank=True,
null=True,
upload_to=analysis.models.get_infference_model_path,
verbose_name='対象物CSVリスト')),
('is_staff',
models.BooleanField(default=False,
help_text='管理サイトにログイン可能かどうか指定してください。',
verbose_name='スタッフ権限')),
('is_active',
models.BooleanField(default='True',
help_text='ユーザーがアクティブ状態か指定してください。',
verbose_name='アクティブステータス')),
('date_joined',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='登録日')),
('groups',
models.ManyToManyField(
blank=True,
help_text=
'The groups this user belongs to. A user will get all permissions granted to each of their groups.',
related_name='user_set',
related_query_name='user',
to='auth.Group',
verbose_name='groups')),
('user_permissions',
models.ManyToManyField(
blank=True,
help_text='Specific permissions for this user.',
related_name='user_set',
related_query_name='user',
to='auth.Permission',
verbose_name='user permissions')),
],
options={
'db_table': 'user',
},
),
migrations.CreateModel(
name='AppUser',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('email',
models.EmailField(max_length=254,
unique=True,
verbose_name='Emailアドレス')),
('password',
models.CharField(max_length=100, verbose_name='パスワード')),
('apikey',
models.CharField(blank=True,
max_length=150,
null=True,
verbose_name='API Key')),
('username',
models.CharField(default='未設定',
max_length=100,
verbose_name='ユーザー名')),
('thumbnail',
models.ImageField(
default='./userthumbnail/noimage.png',
upload_to=analysis.models.get_userthumbnail_path)),
('sex', models.IntegerField(default=0, verbose_name='性別')),
('birth', models.IntegerField(default=0, verbose_name='生年')),
('country',
models.CharField(default='None',
max_length=5,
verbose_name='地域')),
('language',
models.CharField(default='OT',
max_length=5,
verbose_name='言語')),
('is_active',
models.BooleanField(default='false',
verbose_name='アクティブステータス')),
('date_joined',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='登録日')),
],
options={
'db_table': 'appuser',
'ordering': ('-date_joined', ),
},
),
migrations.CreateModel(
name='Exhibit',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('exhibit_name',
models.CharField(default='',
help_text='60文字以内で入力しください',
max_length=60,
verbose_name='日本語名')),
('exhibit_desc',
models.TextField(default='',
help_text='2000文字以内で入力してください',
max_length=2000,
verbose_name='日本語説明文')),
('exhibit_name_en',
models.CharField(default='',
help_text='140文字以内で入力しください',
max_length=140,
verbose_name='英語名')),
('exhibit_desc_en',
models.TextField(default='',
help_text='2500文字以内で入力してください',
max_length=2500,
verbose_name='英語説明文')),
('exhibit_name_zh',
models.CharField(default='',
help_text='100文字以内で入力しください',
max_length=100,
verbose_name='中国語名')),
('exhibit_desc_zh',
models.TextField(default='',
help_text='2000文字以内で入力してください',
max_length=2000,
verbose_name='中国語説明文')),
('upload_date',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='登録日')),
('owner',
models.ForeignKey(on_delete=django.db.models.deletion.PROTECT,
related_name='exhibit_owner',
to=settings.AUTH_USER_MODEL)),
],
options={
'db_table': 'exhibit',
'ordering': ('-upload_date', ),
},
),
migrations.CreateModel(
name='UserLang',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('language',
models.CharField(choices=[('NA', ''), ('en', 'English'),
('zh', 'Chinese'), ('ko', 'Korea')],
default='NA',
max_length=5,
verbose_name='言語')),
('username',
models.CharField(default='',
help_text='50文字以内で入力してください。',
max_length=50,
verbose_name='ユーザー名')),
('self_intro',
models.TextField(default='',
help_text='2,500文字以内で入力してください。',
max_length=2500,
verbose_name='説明文')),
('address_prefecture',
models.CharField(default='',
help_text='※Tokyo',
max_length=20,
verbose_name='Prefacture')),
('address_city',
models.CharField(default='',
help_text='※Shiba park, Minato-ku',
max_length=50,
verbose_name='City')),
('address_street',
models.CharField(default='',
help_text='※4-2-8',
max_length=50,
verbose_name='Street')),
('entrance_fee',
models.CharField(default='',
help_text='200文字以内で入力してください。',
max_length=200,
verbose_name='費用')),
('business_hours',
models.CharField(default='',
help_text='200文字以内で入力してください。',
max_length=200,
verbose_name='営業時間')),
('holiday',
models.CharField(default='',
help_text='200文字以内で入力してください。',
max_length=200,
verbose_name='定休日')),
('upload_date',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='登録日')),
('owner',
models.ForeignKey(on_delete=django.db.models.deletion.PROTECT,
to=settings.AUTH_USER_MODEL)),
],
options={
'db_table': 'userlang',
},
),
migrations.CreateModel(
name='Review',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('lang',
models.CharField(default='None',
max_length=5,
verbose_name='言語')),
('review_post',
models.TextField(blank=True,
help_text='500文字以内で入力してください。',
max_length=500,
null=True,
verbose_name='レビュー')),
('review_rating',
models.FloatField(blank=True, null=True, verbose_name='評価')),
('date_posted',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='作成日')),
('spot',
models.ForeignKey(on_delete=django.db.models.deletion.PROTECT,
related_name='review_target',
to=settings.AUTH_USER_MODEL)),
('writer',
models.ForeignKey(on_delete=django.db.models.deletion.PROTECT,
related_name='review_writer',
to='analysis.AppUser')),
],
options={
'db_table': 'review',
'ordering': ('-date_posted', ),
},
),
migrations.CreateModel(
name='Like',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('apikey',
models.CharField(blank=True,
max_length=150,
null=True,
verbose_name='API Key')),
('date_posted',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='更新日')),
('spot',
models.ForeignKey(on_delete=django.db.models.deletion.PROTECT,
related_name='like_target',
to=settings.AUTH_USER_MODEL)),
],
options={
'db_table': 'like',
'ordering': ('-date_posted', ),
},
),
migrations.CreateModel(
name='ExhibitPicture',
fields=[
('id',
models.UUIDField(default=uuid.uuid4,
editable=False,
primary_key=True,
serialize=False)),
('post_pic',
models.ImageField(
blank=True,
null=True,
upload_to=analysis.models.get_photo_upload_path)),
('upload_date',
models.DateTimeField(default=django.utils.timezone.now,
verbose_name='登録日')),
('exhibit_id',
models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
related_name='exhibit_pk',
to='analysis.Exhibit')),
],
options={
'db_table': 'exhibit_picture',
'ordering': ('-upload_date', ),
},
),
]
class Migration(migrations.Migration):
initial = True
dependencies = [
('auth', '0011_update_proxy_permissions'),
]
operations = [
migrations.CreateModel(
name='User',
fields=[
('password', models.CharField(max_length=128, verbose_name='password')),
('last_login', models.DateTimeField(blank=True, null=True, verbose_name='last login')),
('is_superuser', models.BooleanField(default=False, help_text='Designates that this user has all permissions without explicitly assigning them.', verbose_name='superuser status')),
('id', models.IntegerField(primary_key=True, serialize=False, verbose_name='sight code')),
('email', models.EmailField(max_length=254, unique=True, verbose_name='email address')),
('username', models.CharField(help_text='Please enter within 30 characters.', max_length=30, verbose_name='user name')),
('thumbnail', models.ImageField(default='./thumbnail/noimage.png', upload_to='thumbnail', verbose_name='thumbnail')),
('self_intro', models.CharField(blank=True, help_text='Please enter within 1000 characters.', max_length=1000, null=True, verbose_name='introduction')),
('major_category', models.CharField(choices=[('00', '-'), ('11', '山岳'), ('12', '高原・湿原・原野'), ('13', '湖沼'), ('14', '河川・渓谷'), ('15', '滝'), ('16', '海岸・岬'), ('17', '岩石・洞窟'), ('18', '動物'), ('19', '植物'), ('21', '史跡'), ('22', '神社・寺院・教会'), ('23', '城跡・宮殿'), ('24', '集落・街'), ('25', '郷土景観'), ('26', '庭園・公園'), ('27', '建造物'), ('28', '年中行事（祭り・伝統行事）'), ('29', '動植物園・水族館'), ('30', '博物館・美術館'), ('31', 'テーマ公園・テーマ施設'), ('32', '温泉'), ('33', '食'), ('34', '芸能・イベント')], default='00', max_length=2, verbose_name='major category')),
('address', models.CharField(blank=True, help_text='Please enter within 150 characters.', max_length=150, null=True, verbose_name='address')),
('telephone', models.CharField(max_length=15, validators=[django.core.validators.RegexValidator(message='Tel number must be entered in the format: "09012345678". Up to 15 digits allowed.', regex='^[0-9]+$')], verbose_name='telephone number')),
('entrance_fee', models.CharField(blank=True, help_text='Please enter within 150 characters.', max_length=150, null=True, verbose_name='entrance fee')),
('business_hours', models.CharField(blank=True, help_text='Please enter within 100 characters.', max_length=100, null=True, verbose_name='business hours')),
('holiday', models.CharField(blank=True, help_text='Please enter within 30 characters.', max_length=30, null=True, verbose_name='holiday')),
('is_staff', models.BooleanField(default=False, help_text='管理サイトにログイン可能かどうか指定してください。', verbose_name='staff_status')),
('is_active', models.BooleanField(default='True', help_text='ユーザーがアクティブ状態か指定してください。', verbose_name='active')),
('date_joined', models.DateTimeField(default=django.utils.timezone.now, verbose_name='date_joined')),
('groups', models.ManyToManyField(blank=True, help_text='The groups this user belongs to. A user will get all permissions granted to each of their groups.', related_name='user_set', related_query_name='user', to='auth.Group', verbose_name='groups')),
('user_permissions', models.ManyToManyField(blank=True, help_text='Specific permissions for this user.', related_name='user_set', related_query_name='user', to='auth.Permission', verbose_name='user permissions')),
],
options={
'db_table': 'user',
},
),
migrations.CreateModel(
name='Exhibit',
fields=[
('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
('exhibit_name', models.TextField(help_text='30文字以内で入力しください', max_length=30)),
('exhibit_desc', models.TextField(help_text='500文字以内で入力してください', max_length=500)),
('exhibit_name_en', models.TextField(blank=True, default='', help_text='30文字以内で入力しください', max_length=30, null=True)),
('exhibit_desc_en', models.TextField(blank=True, default='', help_text='500文字以内で入力してください', max_length=500, null=True)),
('exhibit_name_zh', models.TextField(blank=True, default='', help_text='30文字以内で入力しください', max_length=30, null=True)),
('exhibit_desc_zh', models.TextField(blank=True, default='', help_text='500文字以内で入力してください', max_length=500, null=True)),
('upload_date', models.DateTimeField(default=django.utils.timezone.now)),
('owner', models.ForeignKey(on_delete=django.db.models.deletion.PROTECT, related_name='exhibit_owner', to=settings.AUTH_USER_MODEL)),
],
options={
'db_table': 'exhibit',
'ordering': ('-upload_date',),
},
),
migrations.CreateModel(
name='UserLang',
fields=[
('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
('language', models.CharField(choices=[('na', ''), ('en', 'English'), ('zh', 'Chinese'), ('ko', 'Korea')], default='NA', max_length=5, verbose_name='language')),
('username', models.CharField(blank=True, help_text='Please enter within 30 characters.', max_length=30, null=True, verbose_name='user name')),
('self_intro', models.CharField(blank=True, help_text='Please enter within 1000 characters.', max_length=1000, null=True, verbose_name='introduction')),
('address', models.CharField(blank=True, help_text='Please enter within 150 characters.', max_length=150, null=True, verbose_name='address')),
('entrance_fee', models.CharField(blank=True, help_text='Please enter within 150 characters.', max_length=150, null=True, verbose_name='entrance fee')),
('business_hours', models.CharField(blank=True, help_text='Please enter within 100 characters.', max_length=100, null=True, verbose_name='business hours')),
('holiday', models.CharField(blank=True, help_text='Please enter within 30 characters.', max_length=30, null=True, verbose_name='holiday')),
('upload_date', models.DateTimeField(default=django.utils.timezone.now)),
('owner', models.ForeignKey(on_delete=django.db.models.deletion.PROTECT, to=settings.AUTH_USER_MODEL)),
],
options={
'db_table': 'userlang',
},
),
migrations.CreateModel(
name='ExhibitPicture',
fields=[
('id', models.UUIDField(default=uuid.uuid4, editable=False, primary_key=True, serialize=False)),
('post_pic', models.ImageField(blank=True, null=True, upload_to=analysis.models.get_photo_upload_path)),
('upload_date', models.DateTimeField(default=django.utils.timezone.now)),
('exhibit_id', models.ForeignKey(on_delete=django.db.models.deletion.PROTECT, related_name='exhibit_pk', to='analysis.Exhibit')),
],
options={
'db_table': 'exhibit_picture',
'ordering': ('-upload_date',),
},
),
]
class Migration(migrations.Migration):
initial = True
dependencies = [
migrations.swappable_dependency(settings.AUTH_USER_MODEL),
]
operations = [
migrations.CreateModel(
name='Analysis',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('anchor',
models.PositiveSmallIntegerField(
choices=[(0, 'start'), (1, 'center'), (2, 'end')],
default=1,
help_text=
'Where to center analysis window relative to BED range')),
('bin_start',
models.IntegerField(
default=-2500,
help_text='Distance from anchor to start designating bins'
)),
('bin_number',
models.PositiveIntegerField(
default=50,
help_text='Number of bins to use in search window',
validators=[
django.core.validators.MinValueValidator(50),
django.core.validators.MaxValueValidator(250)
])),
('bin_size',
models.PositiveIntegerField(
default=100,
help_text='Size of bins to use in search window',
validators=[django.core.validators.MinValueValidator(1)
])),
('name', models.CharField(max_length=128)),
('slug', models.CharField(max_length=128)),
('description', models.TextField(blank=True)),
('validated', models.BooleanField(default=False)),
('validation_errors', models.TextField(blank=True)),
('validation_warnings', models.TextField(blank=True)),
('start_time', models.DateTimeField(null=True)),
('end_time', models.DateTimeField(null=True)),
('uuid', models.UUIDField(default=uuid.uuid4, editable=False)),
('public', models.BooleanField(default=False)),
('output',
models.FileField(blank=True,
max_length=256,
null=True,
upload_to='analysis/')),
('created', models.DateTimeField(auto_now_add=True)),
('last_updated', models.DateTimeField(auto_now=True)),
],
options={
'verbose_name_plural': 'Analyses',
},
bases=(analysis.models.ValidationMixin, models.Model),
),
migrations.CreateModel(
name='AnalysisDatasets',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('display_name', models.CharField(max_length=128)),
('created', models.DateTimeField(auto_now_add=True)),
('last_updated', models.DateTimeField(auto_now=True)),
('analysis',
models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
to='analysis.Analysis')),
],
options={
'verbose_name_plural': 'Analysis datasets',
},
),
migrations.CreateModel(
name='DatasetDownload',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('url', models.URLField()),
('data',
models.FileField(
blank=True,
max_length=256,
storage=utils.models.ReadOnlyFileSystemStorage(
location=settings.USERDATA_PATH),
upload_to='')),
('filesize', models.FloatField(null=True)),
('md5', models.CharField(max_length=64, null=True)),
('status_code',
models.PositiveSmallIntegerField(choices=[
(0, 'not-started'), (1, 'started'),
(2, 'finished with errors'), (3, 'successfully completed')
],
default=0)),
('status', models.TextField(blank=True, null=True)),
('start_time', models.DateTimeField(blank=True, null=True)),
('end_time', models.DateTimeField(blank=True, null=True)),
('owner',
models.ForeignKey(null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='datasetdownload',
to=settings.AUTH_USER_MODEL)),
],
),
migrations.CreateModel(
name='FeatureList',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('name', models.CharField(max_length=128)),
('slug', models.CharField(max_length=128)),
('description', models.TextField(blank=True)),
('uuid', models.UUIDField(default=uuid.uuid4, editable=False)),
('public', models.BooleanField(default=False)),
('validated', models.BooleanField(default=False)),
('validation_errors', models.TextField(blank=True)),
('validation_warnings', models.TextField(blank=True)),
('created', models.DateTimeField(auto_now_add=True)),
('last_updated', models.DateTimeField(auto_now=True)),
('stranded', models.BooleanField(default=True)),
('dataset', models.FileField(max_length=256, upload_to='')),
],
options={
'abstract': False,
},
bases=(analysis.models.ValidationMixin, models.Model),
),
migrations.CreateModel(
name='FeatureListCountMatrix',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('anchor',
models.PositiveSmallIntegerField(
choices=[(0, 'start'), (1, 'center'),
(2, 'end')],
default=1,
help_text=
'Where to center analysis window relative to BED range')),
('bin_start',
models.IntegerField(
default=-2500,
help_text='Distance from anchor to start designating bins'
)),
('bin_number',
models.PositiveIntegerField(
default=50,
help_text='Number of bins to use in search window',
validators=[
django.core.validators.MinValueValidator(50),
django.core.validators.MaxValueValidator(250)
])),
('bin_size',
models.PositiveIntegerField(
default=100,
help_text='Size of bins to use in search window',
validators=[django.core.validators.MinValueValidator(1)
])),
('matrix',
models.FileField(help_text='Matrix file of read coverage',
max_length=256,
upload_to='fcm/')),
('created', models.DateTimeField(auto_now_add=True)),
('last_updated', models.DateTimeField(auto_now=True)),
],
options={
'verbose_name_plural': 'Feature list count matrices',
},
),
migrations.CreateModel(
name='GenomeAssembly',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('name', models.CharField(max_length=32, unique=True)),
('chromosome_size_file',
utils.models.DynamicFilePathField(
max_length=128,
path=orio.utils.get_data_path,
unique=True)),
('annotation_file',
utils.models.DynamicFilePathField(
max_length=128,
path=orio.utils.get_data_path,
unique=True)),
],
options={
'verbose_name_plural': 'genome assemblies',
},
),
migrations.CreateModel(
name='GenomicDataset',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('name', models.CharField(max_length=128)),
('slug', models.CharField(max_length=128)),
('description', models.TextField(blank=True)),
('uuid', models.UUIDField(default=uuid.uuid4, editable=False)),
('public', models.BooleanField(default=False)),
('validated', models.BooleanField(default=False)),
('validation_errors', models.TextField(blank=True)),
('validation_warnings', models.TextField(blank=True)),
('created', models.DateTimeField(auto_now_add=True)),
('last_updated', models.DateTimeField(auto_now=True)),
],
options={
'abstract': False,
},
),
migrations.CreateModel(
name='SortVector',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('name', models.CharField(max_length=128)),
('slug', models.CharField(max_length=128)),
('description', models.TextField(blank=True)),
('uuid', models.UUIDField(default=uuid.uuid4, editable=False)),
('public', models.BooleanField(default=False)),
('validated', models.BooleanField(default=False)),
('validation_errors', models.TextField(blank=True)),
('validation_warnings', models.TextField(blank=True)),
('created', models.DateTimeField(auto_now_add=True)),
('last_updated', models.DateTimeField(auto_now=True)),
('dataset', models.FileField(max_length=256, upload_to='')),
('feature_list',
models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
to='analysis.FeatureList')),
('owner',
models.ForeignKey(blank=True,
null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='sortvector',
to=settings.AUTH_USER_MODEL)),
],
options={
'abstract': False,
},
bases=(analysis.models.ValidationMixin, models.Model),
),
migrations.CreateModel(
name='TemporaryDownload',
fields=[
('id',
models.AutoField(auto_created=True,
primary_key=True,
serialize=False,
verbose_name='ID')),
('file',
models.FileField(
max_length=256,
upload_to=analysis.models.get_temporary_download_path)),
('created', models.DateTimeField(auto_now_add=True)),
('owner',
models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
related_name='temporarydownload',
to=settings.AUTH_USER_MODEL)),
],
),
migrations.CreateModel(
name='EncodeDataset',
fields=[
('genomicdataset_ptr',
models.OneToOneField(
auto_created=True,
on_delete=django.db.models.deletion.CASCADE,
parent_link=True,
primary_key=True,
serialize=False,
to='analysis.GenomicDataset')),
('data_ambiguous',
models.FileField(
blank=True,
help_text=
'Coverage data for which strand is ambiguous or unknown',
max_length=256,
storage=utils.models.ReadOnlyFileSystemStorage(
location=settings.ENCODE_PATH),
upload_to='')),
('data_plus',
models.FileField(
blank=True,
help_text='Coverage data for which strand is plus',
max_length=256,
storage=utils.models.ReadOnlyFileSystemStorage(
location=settings.ENCODE_PATH),
upload_to='')),
('data_minus',
models.FileField(
blank=True,
help_text='Coverage data for which strand is minus',
max_length=256,
storage=utils.models.ReadOnlyFileSystemStorage(
location=settings.ENCODE_PATH),
upload_to='')),
('data_type',
models.CharField(db_index=True,
help_text='Experiment type',
max_length=16)),
('cell_type',
models.CharField(
db_index=True,
help_text=
'Cell type (cell line or tissue); reported by ENCODE',
max_length=32)),
('antibody',
models.CharField(
blank=True,
db_index=True,
help_text='Antibody used in pulldown; reported by ENCODE',
max_length=32)),
('rna_extract',
models.CharField(
blank=True,
db_index=True,
help_text='RNA extraction protocol; reported by ENCODE',
max_length=32)),
('treatment',
models.CharField(
blank=True,
db_index=True,
help_text=
'Experimental treatment of cells; reported by ENCODE',
max_length=32)),
('phase',
models.CharField(blank=True,
db_index=True,
help_text='Cell phase; reported by ENCODE',
max_length=32)),
('localization',
models.CharField(
blank=True,
db_index=True,
help_text='Cellular localization; reported by ENCODE',
max_length=32)),
('extra_content',
django.contrib.postgres.fields.jsonb.JSONField(default=dict)),
],
options={
'abstract': False,
},
bases=('analysis.genomicdataset', ),
),
migrations.CreateModel(
name='UserDataset',
fields=[
('genomicdataset_ptr',
models.OneToOneField(
auto_created=True,
on_delete=django.db.models.deletion.CASCADE,
parent_link=True,
primary_key=True,
serialize=False,
to='analysis.GenomicDataset')),
('data_type',
models.CharField(choices=[
('Cage', 'Cage'), ('ChiaPet', 'ChiaPet'),
('ChipSeq', 'ChipSeq'), ('DnaseDgf', 'DnaseDgf'),
('DnaseSeq', 'DnaseSeq'), ('FaireSeq', 'FaireSeq'),
('Mapability', 'Mapability'),
('Nucleosome', 'Nucleosome'), ('Orchid', 'Orchid'),
('RepliChip', 'RepliChip'), ('RepliSeq', 'RepliSeq'),
('RipSeq', 'RipSeq'),
('RnaPet', 'RnaPet'),
('RnaSeq',
'RnaSeq'), ('SmartSeq', 'SmartSeq'),
('Other', 'Other (describe in "description" field)')
],
help_text='Experiment type',
max_length=16)),
('url', models.URLField(max_length=256, null=True)),
('expiration_date', models.DateTimeField(null=True)),
('ambiguous',
models.ForeignKey(
help_text=
'Coverage data for which strand is ambiguous or unknown',
null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='ambiguous',
to='analysis.DatasetDownload')),
('minus',
models.ForeignKey(
help_text='Coverage data for which strand is minus',
null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='minus',
to='analysis.DatasetDownload')),
('plus',
models.ForeignKey(
help_text='Coverage data for which strand is plus',
null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='plus',
to='analysis.DatasetDownload')),
],
options={
'abstract': False,
},
bases=(analysis.models.ValidationMixin, 'analysis.genomicdataset'),
),
migrations.AddField(
model_name='genomicdataset',
name='genome_assembly',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
to='analysis.GenomeAssembly'),
),
migrations.AddField(
model_name='genomicdataset',
name='owner',
field=models.ForeignKey(
blank=True,
null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='genomicdataset',
to=settings.AUTH_USER_MODEL),
),
migrations.AddField(
model_name='featurelistcountmatrix',
name='dataset',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
related_name='intermediates',
to='analysis.GenomicDataset'),
),
migrations.AddField(
model_name='featurelistcountmatrix',
name='feature_list',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
related_name='intermediates',
to='analysis.FeatureList'),
),
migrations.AddField(
model_name='featurelist',
name='genome_assembly',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
to='analysis.GenomeAssembly'),
),
migrations.AddField(
model_name='featurelist',
name='owner',
field=models.ForeignKey(
blank=True,
null=True,
on_delete=django.db.models.deletion.CASCADE,
related_name='featurelist',
to=settings.AUTH_USER_MODEL),
),
migrations.AddField(
model_name='analysisdatasets',
name='count_matrix',
field=models.ForeignKey(
help_text='Matrix of read coverage over genomic features',
null=True,
on_delete=django.db.models.deletion.CASCADE,
to='analysis.FeatureListCountMatrix'),
),
migrations.AddField(
model_name='analysisdatasets',
name='dataset',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
to='analysis.GenomicDataset'),
),
migrations.AddField(
model_name='analysis',
name='datasets',
field=models.ManyToManyField(through='analysis.AnalysisDatasets',
to='analysis.GenomicDataset'),
),
migrations.AddField(
model_name='analysis',
name='feature_list',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
to='analysis.FeatureList'),
),
migrations.AddField(
model_name='analysis',
name='genome_assembly',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
to='analysis.GenomeAssembly'),
),
migrations.AddField(
model_name='analysis',
name='owner',
field=models.ForeignKey(
on_delete=django.db.models.deletion.CASCADE,
to=settings.AUTH_USER_MODEL),
),
migrations.AddField(
model_name='analysis',
name='sort_vector',
field=models.ForeignKey(
blank=True,
null=True,
on_delete=django.db.models.deletion.CASCADE,
to='analysis.SortVector'),
),
]