def get_sim_3d(match_pars):
''' get simulation object corresponding to (g,eta,inh2_ratio)
match_pars is a dictionary, e.g. {'g':5.6,'eta':7.6, 'inh2_ratio':0.5}
CAUTION: check order of keys'''
#batch_pars ={'pg_rate_exc':ext_rate,'extra_inh':add_inh_rate,'exc2_ratio':exc_range,'inh2_ratio':inh_range }
batch_pars = {
'pg_rate_exc': ext_rate,
'pg_rate_inh': add_inh_rate,
'exc2_ratio': exc_range,
'inh2_ratio': inh_range
}
comb_pars = [[value for (key, value) in zip(batch_pars, values)]
for values in itertools.product(*batch_pars.values())]
sim_id = -1
keys_sort = batch_pars.keys()
match_pars_lis = [match_pars[k] for k in keys_sort]
for ii, pars in enumerate(comb_pars):
if match_pars_lis == np.array(pars).round(2).tolist():
sim_id = ii
#print pars
if sim_id > -1:
res = adata.analyze_data(prefix0 + '_%d' % sim_id, path1)
#print 'sim_id is: ',sim_id
return res
else:
print 'No %s found' % match_pars.keys()
return comb_pars, batch_pars.keys()
import matplotlib.cm as cm import plotly.plotly as py from plotly.graph_objs import * import random #prefix1 = 'beta_oscil-2' path1 = '/media/DISK_B/results/basal/' fil_name = 'test' fig = pl.figure(1,(12,8)) ad1 = adata.analyze_data(fil_name,path1) ad1.load_spikes() spikes = ad1.events['spikes'] labelsize = 18. ax1 = fig.add_axes([0.075, 0.075, 0.225,0.375]) stn_spikes = spikes[spikes[:,0] < 1000.] gpe_spikes = spikes[spikes[:,0] > 1000.] stn_spikes_smp = random.sample(np.unique(stn_spikes[:,0]), 100) hh = [] for ii in stn_spikes_smp: hh.append(stn_spikes[stn_spikes[:,0]==ii]) stn_spikes_new = np.array([item for sublist in hh for item in sublist]) gpe_spikes_smp = random.sample(np.unique(gpe_spikes[:,0]), 300) hh = [] for ii in gpe_spikes_smp:
prefix = 'test' pars = dict() pars['model_type'] = 'psdb' pars['add_spikes'] = 0 pars['T_sim'] = 1000. #pars['delay'] = 5.0 #pars['g'] = 9.0 pars['inh2_ratio'] = 0.7 pars['exc2_ratio'] = 0. pars['pg_rate_exc'] = 5000. #3.6 pars['pg_rate_inh'] = 2100. pars['num_spikes_burst_stn'] = 4. pars['num_spikes_burst_gpe'] = 4. pars['add_spikes'] = 0 pars['extra_spk'] = 'inh' pars['st_val'] = 700. pars['num_gen'] = 300 pars['ex_width'] = 8. pars['rnd_seeds'] = 1 pars['change_type'] = 1 pars['num_chg'] = 500 net1 = simd.Simulation(prefix, pars) net1.sim() ad2 = adata.analyze_data(prefix) #pl.figure() ad2.plot_raster(4000)
nr = 0
max_state_var_stn = 4.
state_var_stn = 0.
state_var_gpe = 0.5
ff = ff_max
chk_val = 0
#while ff <= ff_max:
while state_var_gpe <= max_spb + 1:
#while state_var >= 0:
if nr == 0:
#pars['add_input'] = -200.
net1 = simd.Simulation(prefix, pars)
net1.sim()
ad1 = adata.analyze_data(prefix)
ff = ad1.comp_ff(pop_id='pops_exc', time_range=[200., 1000.])
ff_lis.append(ff)
print ff
else:
#pars['add_input'] = -200.
if ff >= ff_max - 3:
pars['exc2_ratio'] = 0.8
pars['state_var_stn'] = max_state_var_stn
print 'critical point'
chk_val += 1
state_var_stn = max_state_var_stn
pars['state_var_gpe'] = state_var_gpe
net1 = simd.Simulation(prefix, pars)
net1.sim()
ad1 = adata.analyze_data(prefix)
import sys
sys.path.append('/users/padmanabhan/simulations/basal/scripts/common/')
import analyze_data_psd as ad
reload(ad)
results_path = '/media/DISK_B/results/basal/'
labelsize = 16
ticksize = 16
col_add = '#A6842A'
col_base = '#246742'
col_control = '#2358B8'
fig = pl.figure(1, figsize=(8, 12))
ax1 = fig.add_axes([0.11, 0.35, 0.4, 0.2])
ad1 = ad.analyze_data('test_add_spikes', results_path)
ad1.comp_psth(form='-',
plot_fl=1,
pop_id='pops_inh',
label='Add. spikes outside cycle',
color=col_add)
ad1 = ad.analyze_data('test_add_spikes-control', results_path)
ad1.comp_psth(form='-',
plot_fl=1,
pop_id='pops_inh',
label='Add. spikes within cycle',
color=col_control)
ad1 = ad.analyze_data('test', results_path)
ad1.comp_psth(form='-',
import numpy as np
import matplotlib.pyplot as pl
import sys
sys.path.append('/users/padmanabhan/simulations/basal/scripts/common/')
import analyze_data_psd as ad
reload(ad)
results_path = '/media/DISK_B/results/basal/'
labelsize = 14
ticksize = 14
col_base = '#7E89FF'
col_add = '#3242FF'
col_control = '#3F447F'
fig = pl.figure(1, figsize=(8, 8))
ax1 = fig.add_axes([0.09, 0.5, 0.4, 0.3])
ad1 = ad.analyze_data('add_inh_spikes_dest_osc', results_path)
ad1.comp_psth(form='-',
plot_fl=1,
pop_id='pops_inh',
label='Add. spikes outside cycle',
color=col_add)
ad1 = ad.analyze_data('add_inh_spikes_dest_osc-control', results_path)
ad1.comp_psth(form='-',
plot_fl=1,
pop_id='pops_inh',
label='Add. spikes within cycle',
color=col_control)
ad1 = ad.analyze_data('test', results_path)
ad1.comp_psth(form='-',