def printHeightsPerTree( values, section, options, prefix_header, prefix_row ):
if not values: return
outfile, is_new = TreeReconciliation.getFile( options, section )
if is_new:
outfile.write("%s%s\theights\n" % (prefix_header, "\t".join(Stats.DistributionalParameters().getHeaders())))
s = Stats.DistributionalParameters( values )
s.setFormat( options.format_branch_length )
outfile.write("%s%s\t%s\n" % (prefix_row,
str(s),
",".join(map(lambda x: options.format_branch_length % x, values))))
def printHeightsPerTree(values, section, options, prefix_header,
prefix_row):
if not values: return
outfile, is_new = TreeReconciliation.getFile(options, section)
if is_new:
outfile.write("%s%s\theights\n" % (prefix_header, "\t".join(
Stats.DistributionalParameters().getHeaders())))
s = Stats.DistributionalParameters(values)
s.setFormat(options.format_branch_length)
outfile.write("%s%s\t%s\n" % (prefix_row, str(s), ",".join(
map(lambda x: options.format_branch_length % x, values))))
def printHeightsPerSpecies( values, section, options, prefix_header, prefix_row):
if not values: return
## distributions of distance to node
outfile, is_new = TreeReconciliation.getFile( options, section )
if is_new:
outfile.write("%sspecies\t%s\theights\n" % (prefix_header, "\t".join(Stats.DistributionalParameters().getHeaders())))
for species in sorted(values.keys()):
s = Stats.DistributionalParameters( values[species] )
s.setFormat( options.format_branch_length )
outfile.write("%s%s\t%s\t%s\n" % (prefix_row,
species,
str(s),
",".join(map(lambda x: options.format_branch_length % x, values[species]))))
def printHeightsPerSpecies(values, section, options, prefix_header,
prefix_row):
if not values: return
## distributions of distance to node
outfile, is_new = TreeReconciliation.getFile(options, section)
if is_new:
outfile.write("%sspecies\t%s\theights\n" %
(prefix_header, "\t".join(
Stats.DistributionalParameters().getHeaders())))
for species in sorted(values.keys()):
s = Stats.DistributionalParameters(values[species])
s.setFormat(options.format_branch_length)
outfile.write("%s%s\t%s\t%s\n" %
(prefix_row, species, str(s), ",".join(
map(lambda x: options.format_branch_length % x,
values[species]))))