def processPassageAnnotation(pred, true, countDict, checkID):
anns_pred = pred['annotations']
anns_true = Annotation.sortAnns(true['annotations'], TBDFilter= False)
for ann_pred in anns_pred:
if Annotation.gettype(ann_pred) == 'Gene':
countDict['pred_gene_num'] += 1
else:
continue
flag = False
for ann_true in anns_true:
if Annotation.isSame(ann_pred, ann_true, checkID):
countDict['tp'] += 1
flag = True
break
if not flag:
countDict['fp'] += 1
# print(ann_pred)
countDict['true_gene_num'] += len(anns_true)
for ann_true in anns_true:
flag = False
for ann_pred in anns_pred:
if Annotation.isSame(ann_pred, ann_true, checkID):
flag = True
break
if not flag:
countDict['fn'] += 1
