def to_json(self) -> Dict[str, Any]:
return {
"location": serialiser.location_to_json(self.location),
"name": self.get_name(),
"score": self.score,
"core": self.core,
"leader": self.leader
}
def to_json(self) -> Dict[str, Any]:
""" Converts the results to JSON format """
cds_features_by_cluster = {key: [(serialiser.location_to_json(feature.location),
feature.get_name()) for feature in features]
for key, features in self.cds_features.items()}
return {"record_id": self.record_id,
"schema_version": ThioResults.schema_version,
"clusters with motifs": [cluster.get_cluster_number() for cluster in self.clusters_with_motifs],
"motifs": [motif.to_json() for motif in self.motifs],
"cds_features": cds_features_by_cluster}
def to_json(self) -> Dict[str, Any]:
cds_features = [(serialiser.location_to_json(feature.location),
feature.get_name()) for feature in self.new_cds_features]
motifs = {}
for locus, locus_motifs in self.motifs_by_locus.items():
motifs[locus] = [motif.to_json() for motif in locus_motifs]
return {"record_id": self.record_id,
"schema_version": SactiResults.schema_version,
"motifs": motifs,
"new_cds_features": cds_features,
"clusters": {key: list(val) for key, val in self.clusters.items()}}
def convert(self, location, expected_type=FeatureLocation):
assert isinstance(location, expected_type)
before_string = str(location)
print(before_string) # just for help when debugging a failing test
after_string = serialiser.location_to_json(location)
assert isinstance(after_string, str)
assert before_string == after_string
new_location = serialiser.location_from_json(after_string)
assert isinstance(new_location, expected_type)
return new_location