def test_n_terminals_with_start(self):
residues = orderfinder.extract_nterminus(
self.data_dir, self.features, self.features_by_id["STAUR_3982"])
assert residues == {
'STAUR_3972': 'L-',
'STAUR_3983': 'DK',
'STAUR_3984': 'SQ',
'STAUR_3985': 'SV'
}
def test_n_terminals_no_start(self):
residues = orderfinder.extract_nterminus(self.data_dir, self.features,
None)
assert residues == {
'STAUR_3972': 'L-',
'STAUR_3982': 'ER',
'STAUR_3983': 'DK',
'STAUR_3984': 'SQ',
'STAUR_3985': 'SV'
}
def test_n_terminals_no_start(
self): # TODO: move to integration or mock muscle
residues = orderfinder.extract_nterminus(self.data_dir, self.features,
None)
assert residues == {
'STAUR_3972': 'L-',
'STAUR_3982': 'ER',
'STAUR_3983': 'DK',
'STAUR_3984': 'SQ',
'STAUR_3985': 'SV'
}