def gen_gene_consistency_plots(self):
""" generate and save the gene consistency plots for each gene."""
if not self.gene_coverage_consistency_dict_initiated:
self.init_gene_coverage_consistency_information()
gene_ids = self.gene_level_coverage_stats_dict_of_dataframes['mean_coverage'].index
num_genes, counter = len(gene_ids), 1
progress.new('Plotting gene consistency information')
progress.update('...')
for gene_id in gene_ids:
if num_genes > 100 and counter % 100 == 0:
self.progress.update('%d of %d genes...' % (counter, num_genes))
p = MCGPlots(self, gene_id, run=run, progress=progress)
p.plot()
progress.end()
def gen_gene_consistency_plots(self):
""" generate and save the gene consistency plots for each gene."""
if not self.gene_coverage_consistency_dict_initiated:
self.init_gene_coverage_consistency_information()
gene_ids = self.gene_level_coverage_stats_dict_of_dataframes['mean_coverage'].index
num_genes, counter = len(gene_ids), 1
progress.new('Plotting gene consistency information')
progress.update('...')
for gene_id in gene_ids:
if num_genes > 100 and counter % 100 == 0:
self.progress.update('%d of %d genes...' % (counter, num_genes))
p = MCGPlots(self, gene_id, run=run, progress=progress)
p.plot()
progress.end()