def cluster(self):
self.run.info('CONCOCT VGBMM',
'Requesting %d clusters' % (self.NClusters))
self.progress.new('VBGMM')
self.progress.update('Clustering ...')
vbgmm.fit(self.transformed_data, self.assign, self.NClusters,
self.debug)
self.progress.end()
self.run.info('CONCOCT VGBMM',
'Returning %d final clusters' % (len(set(self.assign))))
# construct and return a results dictionary:
bin_name_conversion_dict = {}
bin_counter = 1
for bin_id, num_contigs in collections.Counter(
self.assign).most_common():
bin_name_conversion_dict[bin_id] = 'Bin_%d' % bin_counter
bin_counter += 1
return dict(
list(
zip(self.contig_names,
[bin_name_conversion_dict[g] for g in self.assign])))
def cluster(self):
self.progress.new('VBGMM')
self.progress.update('Clustering ...')
vbgmm.fit(self.transformed_data, self.assign, self.NClusters, self.debug)
self.progress.end()
self.run.info('CONCOCT VGBMM', 'Done with %d clusters' % (len(set(self.assign))))
# construct and return a results dictionary:
return dict(zip(self.contig_names, ['Bin_%d' % g for g in self.assign]))
def cluster(self):
self.progress.new('VBGMM')
self.progress.update('Clustering ...')
vbgmm.fit(self.transformed_data, self.assign, self.NClusters, self.debug)
self.progress.end()
self.run.info('CONCOCT VGBMM', 'Done with %d clusters' % (len(set(self.assign))))
# construct and return a results dictionary:
return dict(zip(self.contig_names, ['Bin_%d' % g for g in self.assign]))
def cluster(self):
self.progress.new("VBGMM")
self.progress.update("Clustering ...")
vbgmm.fit(self.transformed_data, self.assign, self.NClusters, self.debug)
self.progress.end()
self.run.info("CONCOCT VGBMM", "Done with %d clusters" % (len(set(self.assign))))
# construct and return a results dictionary:
return dict(zip(self.contig_names, ["Bin_%d" % g for g in self.assign]))
def cluster(self):
self.progress.new('VBGMM')
self.progress.update('Clustering ...')
vbgmm.fit(self.transformed_data, self.assign, self.NClusters, self.debug)
self.progress.end()
self.run.info('CONCOCT VGBMM', 'Done with %d clusters' % (len(set(self.assign))))
# construct and return a results dictionary:
bin_name_conversion_dict = {}
bin_counter = 1
for bin_id, num_contigs in collections.Counter(self.assign).most_common():
bin_name_conversion_dict[bin_id] = 'Bin_%d' % bin_counter
bin_counter += 1
return dict(zip(self.contig_names, [bin_name_conversion_dict[g] for g in self.assign]))