def create_app(env):
app = Flask(__name__,
static_folder='../static',
template_folder='../templates')
app.config.from_object(envs.get(env))
init_ext(app)
init_api(app)
return app
from flask import Flask
from flask_restful import Resource
from api import init_api
import settings
from dao import init_db
app = Flask(__name__)
#配置app
app.config.from_object(settings.Config)
#初始化API
init_api(app)
#初始化dao，或db
init_db(app)
if __name__ == '__main__':
app.run()
#!/usr/bin/env python3
# Copyright (c) 2020 Merck Sharp & Dohme Corp. a subsidiary of Merck & Co., Inc., Kenilworth, NJ, USA.
#
# This file is part of the Mutation Maker, An Open Source Oligo Design Software For Mutagenesis and De Novo Gene Synthesis Experiments.
#
# Mutation Maker is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from api import init_api
print("Mutation Maker version: 1.0.0")
api = init_api()
app = api.http.server()
def get_app(production=True):
setproctitle('api webserver [DINDI]')
app = Flask(__name__,
static_url_path="",
static_folder='build',
template_folder='build'
)
CORS(app)
app.debug = not production
private_config_get_or_create(app)
app.db = initdb(app)
init_security(app)
init_api(app)
app.db.create_all()
UPLOAD_FOLDER = 'uploads'
@app.errorhandler(404)
def catch_all(e):
url = flask.request.path
if url == "/404/":
jinja_env = Environment(
loader=PackageLoader('templates'),
autoescape=select_autoescape(['html', 'xml'])
)
template = jinja_env.get_template('404.html')
return template.render(), 404
else:
# Catch-all
ext = os.path.splitext(url)[-1]
if ext in {'.jpg', '.ico', '.png', '.svg',
'.map', '.js', '.json', '.css'}:
pass # serve static from folder
else:
url = 'index.html' # serve the SPA
if url.startswith('/'):
url = url[1:]
if os.path.isfile(
os.path.join(DIST_FOLDER, url)
):
return flask.send_from_directory(DIST_FOLDER, url)
else:
logger.error("Missing file", url)
return "File not found :( " + url
@app.route("/upload/mini$/", methods=['POST'])
def upload_mini():
if 'file' not in flask.request.files:
return flask.jsonify({"error": "No file provided"}), 400
file = flask.request.files['file']
filename = secure_filename(file.filename)
full_path = os.path.join(UPLOAD_FOLDER, filename)
os.makedirs(os.path.dirname(full_path), exist_ok=True)
file.save(full_path)
logger.info(f"Uploaded {filename}")
return flask.jsonify(
dict(
message="Ok we received the mini$ file",
file=filename
)
)
return app
from flask import Flask
from flask_sqlalchemy import SQLAlchemy
app = Flask(__name__)
app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:////tmp/test.db'
app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = True
app.config[
'SECRET_KEY'] = '\xc6\xed\x85\x99\xe9\xb3\xf2\xf1\xad\xed\x98\xc5\xb6=Zi\xbf\x9f\x05\xa2\xe0\xeb\xa7\xfe'
db = SQLAlchemy(app)
from commands import init_commands
import keepmydevices.views
from login import init_login
from admin import init_admin
from api import init_api
init_commands()
init_login()
init_admin()
init_api()
from flask import Flask
from flask import make_response
from flask import render_template
from flask.ext.sqlalchemy import SQLAlchemy
#import flask.ext.restless
from api import init_api
app = Flask(__name__)
app.config.from_pyfile('config')#, silent=True)
db = SQLAlchemy(app)
init_api(app, db)
@app.errorhandler(404)
def not_found(error):
try:
return render_template('404.html'), 404
except:
return make_response('{"error": "Not found"}', 404)
@app.errorhandler(204)
def not_found(error):
return make_response('{"error": "No content"}', 404)
if __name__ == '__main__':
app.run(port = 8000)
def main(cls):
parser = optparse.OptionParser(usage="usage: %prog username ACTION [document-locator [action-specific-args]]")
cls.commands = [
Command('edit', help='edit (with $EDITOR, or opener)'),
Command('list', help='list current texts'),
Command('info', help='get text info (key)', short='n'),
Command('delete', help='delete (locator)'),
Command('add', help='add a new item (title, file)'),
Command('set', help='set new content for an item (locator, file)'),
Command('get', help='print out the contents of a text'),
Command('rename', help='rename item (locator, new_title)'),
Command('quit', help=None),
]
cls.command_map = {}
for command in cls.commands:
if command.help is not None:
command.add(parser)
cls.command_map[command.short] = command.name
cls.command_summary = ", ".join([command.description() for command in cls.commands][:-1]) + " or " + cls.commands[-1].description()
parser.add_option('-i', '--interactive', action='store_const', const='interactive', dest='action', help='savemytext console')
parser.add_option('-o', '--opener', help='set opener command (defaults to $EDITOR)', default=None)
parser.add_option('-L', '--literal', dest='literal_content', action='store_true', help='use literal text content instead of file names', default=False)
parser.add_option('--regex', help='find by case-insensitive regex (the default)', dest='locator', default='regex')
parser.add_option('-x', '--exact', action='store_const', const='exact', help='find by exact title match (default regex)', dest='locator')
parser.add_option('-k', '--key', action='store_const', const='key', help='find by DB key', dest='locator')
parser.add_option('-I', '--index', action='store_const', const='index', help='find by index', dest='locator')
parser.add_option('-v', '--verbose', action='store_true', default=False, help='verbose output')
opts, args = parser.parse_args()
try:
if len(args) < 1:
raise UsageError()
user = args.pop(0)
# general configuration - find method and editor
cls.find = getattr(cls, 'find_by_' + opts.locator)
cls.editor_args = (opts.opener or os.environ.get('EDITOR', 'gnome-text-editor')).split()
cls.literal_content = opts.literal_content
if opts.verbose:
logging.root.setLevel(logging.DEBUG)
action = opts.action or 'interactive'
cls.interactively = action in ('interactive', 'edit', 'get')
smt_func = lambda: init_api(user)
instance = cls(smt_func)
action_method = getattr(instance, action)
instance.execute(action_method, args)
except UsageError:
parser.print_usage()
sys.exit(1)
except AppError, e:
print e
sys.exit(2)
from api import init_api
from user import need_uid
app = Flask(__name__)
app.config.from_pyfile('config.py')
app.logger.setLevel(logging.INFO)
# jinja
app.jinja_env.trim_blocks = True
app.jinja_env.lstrip_blocks = True
# converter
init_converter(app)
# db
init_db(app)
# api
init_api(app)
@app.errorhandler(NotFound)
@app.errorhandler(BadRequest)
def error(error):
code = error.code
return render_template(
'error.html',
status_code=code,
message=error.description
), code
@app.route('/', methods=['GET'])
def home():
def app(monkeypatch):
monkeypatch.setattr(config, "MODELS_FOLDER", "testdata/test-models/models")
monkeypatch.setattr(config, "ML_HARDWARE", "cpu")
app = init_api()
yield app
app = flask.Flask(__name__)
def init_projects():
import api.db as db
import git
import model
for project in db.session().query(model.Project).all():
logger.info('Updating cache for project "%s" (%d)...', project.name, project.project_id)
git.update_project_cache(project.project_id, project.fetch_url)
@app.route('/api/<path:path>')
def unknown_api_endpoint(**kwargs):
flask.abort(404)
@app.route('/')
@app.route('/<path:path>')
def delegate_to_angular(**kwargs):
return app.send_static_file('app.html')
if __name__ == '__main__':
app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///sparta.db'
api.init_db(app)
api.init_api(app)
init_projects()
app.run(debug=True)
from api import init_api server = init_api()
