def condition_good_confidence():
return [
ConditionMaker.condEnum("FT", ["PASS"]),
ConditionMaker.condNum("Max_GQ", min_val=50),
ConditionMaker.condNum("FS", max_val=30)
]
def toJSon(self):
return ConditionMaker.condNum(*self.mData)
def condition_high_confidence():
return condition_good_confidence() + [
ConditionMaker.condNum("QUAL", min_val=40)
]
def condition_high_confidence_QD():
return condition_good_confidence() + [
ConditionMaker.condNum("QD", min_val=4)
]
def impacting_splicing():
return [ConditionMaker.condNum("splice_ai_dsmax", min_val=0.2)]
def condition_all_genotypes_called():
return [ConditionMaker.condNum("Num_NO_CALL", max_val=0)]
def condition_high_quality_all_samples():
return [ConditionMaker.condNum("Min_GQ", min_val=40)]