def setAltId(self,value):
try:
regConfig = DBSession().query(MolRegConfig).get(value)
self.mol_reg_id = regConfig.getRegId()
except Exception,e:
log.exception(e)
raise Exception("Configure your registry id prefix first using the 'Configure' link.")
def setUp(self):
super(TestStudy,self).setUp()
self.program=DBSession().query(Program).first()
self.org=DBSession().query(Org).first()
self.user = User.by_user_name('studyuser')
mrc = DBSession().query(MolRegConfig).first()
self.prefix_id = mrc.id_prefix
s=Study()
s.title = 'Test title'
s.description = 'Test description'
s.uuid = uuid.uuid4().hex
s.created_by_id = self.user.user_id
s.program_id = self.program.program_id
s.org_id = self.org.org_id
DBSession().add(s)
DBSession().flush()
self.study_id = s.id
benz=Mol()
benz.mol_struct = benzene
benz.mol_reg_id = mrc.getRegId()
benz = mergeMol(benz)
imid=Mol()
imid.mol_struct = imidazole
imid.mol_reg_id = mrc.getRegId()
imid = mergeMol(imid)
transaction.commit()
self.study = Study.byId(self.study_id)
self.program=DBSession().query(Program).first()
self.org=DBSession().query(Org).first()
self.user = User.by_user_name('studyuser')