def create_patients():
form = PatientsForm()
# The user pressed the "Submit" button
if 'submit' in request.form:
if form.validate_on_submit():
new_request = {
k: v.capitalize()
for k, v in request.form.items() if k not in
['csrf_token', 'submit', 'cancel', 'ct_scan', 'picture']
}
patient = Patient(**new_request, doctor=current_user)
if form.picture.data:
patient.picture = save_picture_patients(form.picture.data)
db.session.add(patient)
db.session.commit()
flash('Your patient has been added!', 'success')
return redirect(
url_for('patients_blueprint.patients_profile',
patient_id=patient.id))
# The user pressed the "Cancel" button
if 'cancel' in request.form:
return redirect(url_for('home_blueprint.index'))
picture_file = url_for('static', filename='patients_pics/default.png')
return render_template('edit_info.html',
title='Create',
heading='Create',
form=form,
picture_file=picture_file)
def edit_info(patient_id):
patient = Patient.query.get_or_404(patient_id)
form = PatientsForm()
# The user pressed the "Cancel" button
if form.cancel.data:
return redirect(
url_for('patients_blueprint.patients_profile',
patient_id=patient.id))
# The user pressed the "Submit" button
if form.submit.data:
if form.validate_on_submit():
if form.picture.data:
patient.picture = save_picture_patients(form.picture.data)
if form.blood_drawn_date.data:
patient.blood_drawn_date = datetime.strptime(
form.blood_drawn_date.data,
'%Y-%m-%d').strftime('%b %d, %Y')
for field in form:
if field.name not in [
'csrf_token', 'submit', 'cancel', 'ct_scan', 'picture',
'blood_drawn_date'
]:
setattr(patient, field.name, field.data)
db.session.commit()
flash('Your patient info has been updated!', 'success')
return redirect(
url_for('patients_blueprint.patients_profile',
patient_id=patient.id))
elif request.method == 'GET':
for field in form:
if field.name not in [
'csrf_token', 'submit', 'cancel', 'ct_scan', 'picture',
'blood_drawn_date'
]:
field.data = getattr(patient, field.name)
elif field.name == 'blood_drawn_date':
if field.data:
field.data = datetime.strptime(
patient.blood_drawn_date,
'%b %d, %Y').strftime('%Y-%m-%d')
if patient.picture == '':
picture_file = url_for('static', filename='patients_pics/default.png')
else:
picture_file = url_for('static',
filename='patients_pics/' + patient.picture)
return render_template('edit_info.html',
title='Edit',
heading='Edit',
form=form,
picture_file=picture_file,
health_info_dict=health_info_dict)
def pdf_template(patient_id, upload_id):
form = PatientsForm()
upload = Upload.query.filter_by(id=upload_id).first()
upload_list = upload.patient.upload.order_by(
Upload.date_uploaded.desc()).all()
if len(upload_list) > 1:
upload_index = upload_list.index(upload) + 1
previous_upload_list = upload_list[upload_index:]
else:
previous_upload_list = []
ct_scan = upload.ct_scan
patient = upload.patient
specs_list = list(
itertools.chain(*[
health_info_dict['biopsy_test'], health_info_dict['genetic_test']
]))
specs_dict = dict(
zip(specs_list, [getattr(patient, spec) for spec in specs_list]))
if ct_scan.binary_prediction == 0:
result_text = 'NOT having lung cancer'
treatment = 'No treatment required'
medicine = 'No medicine required'
elif ct_scan.binary_prediction == 1:
result = additional_specs(ct_scan.diameter, specs_dict)
result_text = f"stage {result['stage']}, {result['cell_type']}, grade {result['grade']}, {result['invasive_type']}"
treatment = result['treatment']
medicine = result['medicine']
else:
result_text = f'{round(ct_scan.binary_prediction*100, 2)}% chance of having lung cancer'
treatment = 'No treatment required'
medicine = 'No medicine required'
# if not upload.result_text:
# upload.result_text = result_text
# db.session.commit()
rendered = render_template('pdf_template.html',
form=form,
upload=upload,
ct_scan=ct_scan,
result_text=result_text,
treatment=treatment,
medicine=medicine,
result_percent=ct_scan.binary_prediction,
previous_upload_list=previous_upload_list,
health_info_dict=health_info_dict)
return render_pdf(HTML(string=rendered))
def patients_profile(patient_id):
patient = Patient.query.get_or_404(patient_id)
if patient.picture == '':
picture_file = url_for('static', filename='patients_pics/default.png')
else:
picture_file = url_for('static',
filename='patients_pics/' + patient.picture)
return render_template('patients_profile.html',
title='Profile',
patient=patient,
form=PatientsForm(),
picture_file=picture_file)
def patients_profile(patient_id):
patient = Patient.query.get_or_404(patient_id)
if patient.picture == '':
picture_file = url_for('static', filename='patients_pics/default.png')
else:
picture_file = url_for('static',
filename='patients_pics/' + patient.picture)
upload_list = patient.upload.order_by(Upload.date_uploaded.desc()).all()
return render_template('patients_profile.html',
title='Profile',
patient=patient,
form=PatientsForm(),
picture_file=picture_file,
upload_list=upload_list,
health_info_dict=health_info_dict)
def test(patient_id):
patient = Patient.query.get_or_404(patient_id)
form = PatientsForm()
# The user pressed the "Cancel" button
if form.cancel.data:
return redirect(
url_for('patients_blueprint.patients_profile',
patient_id=patient.id))
# The user pressed the "Submit" button
if form.submit.data:
for field in [
'ardenocarcinoma', 'squamous_cell_carcinoma',
'large_cell_carcinoma', 'atypia', 'angiolymphatic',
'lymph_node', 'metastasis', 'egfr', 'alk', 'ros1', 'kras',
'braf', 'mek', 'ret', 'met'
]:
field_data = getattr(form, field).data
setattr(patient, field, field_data)
db.session.commit()
flash('Your patient info has been updated!', 'success')
return redirect(
url_for('patients_blueprint.patients_profile',
patient_id=patient.id,
_anchor='tab_content2'))
elif request.method == 'GET':
for field in [
'ardenocarcinoma', 'squamous_cell_carcinoma',
'large_cell_carcinoma', 'atypia', 'angiolymphatic',
'lymph_node', 'metastasis', 'egfr', 'alk', 'ros1', 'kras',
'braf', 'mek', 'ret', 'met'
]:
field_data = getattr(form, field)
field_data.data = getattr(patient, field)
return render_template('test.html',
title='Test',
heading='Test',
form=form)
def upload_ct_scan():
form = PatientsForm()
return render_template('upload_ct_scan.html',
title='Upload CT Scan',
form=form)