allframe.expect("Good bye", timeout=6000)
allframe.close()
print allframe.isalive()
print "ALLFRAME complete"
## Begin calibration process
## Aperture correction
flux_epoch_1 = target_stem + '_e1_3p6um'
aperture_correction_photometry.apcor_photo(flux_epoch_1)
apcor, sdev_apcor, period = calculate_aperture_correction.calc_apcor(
flux_epoch_1, 'apcor.raw', 2.0, cat_target, cat_name)
apply_aperture_correction.apply_apcor(target_stem + '_e1_3p6um_dn.alf', apcor,
1)
## Calibrate all other epochs
calibrate_all_epochs.calibrate(target_stem + '_3p6um.mch')
## location correction
all_location_corrections.location_corr(target_stem + '_3p6um.mch')
print "Calibration complete"
print "Individual epochs are in " + target_stem + "_epoch_3p6um_dn.cal files"
print "Matched file is " + target_stem + '_3p6um.cal'
print "ALLFRAME complete" ## Begin calibration process ## Aperture correction flux_epoch_1 = target_stem + '_e1_3p6um' aperture_correction_photometry.apcor_photo(flux_epoch_1) cat_name = 'globular' apcor, sdev_apcor = calculate_aperture_correction_testing.calc_apcor(flux_epoch_1, 'apcor.raw', 2.0, target_stem) apply_aperture_correction.apply_apcor(target_stem + '_e1_3p6um_dn.alf', apcor, 1) ## Calibrate all other epochs calibrate_all_epochs.calibrate(target_stem + '_3p6um.mch') ## location correction all_location_corrections.location_corr(target_stem + '_3p6um.mch') print "Calibration complete" print "Individual epochs are in " + target_stem + "_epoch_3p6um_dn.cal files" print "Matched file is " + target_stem + '_3p6um.cal'
def calibrate_and_plot(row):
directory_switcher(row, 0)
survey_ident = row['survey_ident']
ra = row['ra']
dec = row['dec']
period = row['period']
target_name = row['target_name']
channel = 1 ### hardwired to channel 1 here
if (channel == 1 or channel == '3p6um' or channel == '1'):
new_chan = '3p6um'
elif (channel == 2 or channel == '4p5um' or channel == '2'):
new_chan = '4p5um'
else:
print 'invalid channel'
exit(1)
if new_chan == '3p6um': num_chan = 1
if new_chan == '4p5um': num_chan = 2
target_stem = sgr_setup.get_target_stem(survey_ident)
dir_name = re.sub('\.', '_', survey_ident)
dir_name = re.sub('-', '', dir_name)
directory = '/Users/vs522/Dropbox/TRACCS/TRACCS_Output/' + dir_name + '/' + dir_name + '_' + new_chan
os.chdir(directory)
if (len(glob.glob(target_stem + '*' + new_chan + '*.alf')) == 0):
print 'You need to run ALLFRAME before you can calibrate the photometry'
print 'This is the CALIBRATION ONLY script'
print 'Run ``globular_pipeline_anychannel.py`` to do the combined photometry and calibration script'
exit(1)
flux_epoch_1 = target_stem + '_e1_' + new_chan
aperture_correction_photometry.apcor_photo(flux_epoch_1)
apcor, sdev_apcor = calculate_aperture_correction_testing.calc_apcor(
flux_epoch_1, 'apcor.raw', 3, target_stem, 0.3)
apply_aperture_correction.apply_apcor(
target_stem + '_e1_' + new_chan + '_dn.alf', apcor, num_chan)
calibrate_all_epochs.calibrate(target_stem + '_' + new_chan + '.mch')
all_location_corrections.location_corr(target_stem, new_chan)
robust_offset_calculator(row)
#make_rrl_finder_chart(target_stem, ra, dec)
mch_file = target_stem + '_3p6um_cal.mch'
phot_file = target_stem + '_3p6um.cal'
make_rrl_finder_chart(survey_ident, ra, dec)
mag, err = find_which_star(target_stem, ra, dec)
mjds = grab_mjds(mch_file)
#plot_a_lc(target_stem, target_name, period, mjds, mag, err)
#mosaic.save(target_stem + '_location.pdf')
offsets_df = pd.read_csv(target_stem + '_3p6um_cal.off_log',
delim_whitespace=True,
header=None,
names=('obs', 'offset', 'sdev', 'nstars'))
mp.close()
mp.clf()
mp.errorbar(offsets_df.obs,
offsets_df.offset,
yerr=offsets_df.sdev,
color='k',
ls='none')
mp.plot(offsets_df.obs, offsets_df.offset, 'ko', ls='none')
mp.axhline(offsets_df.offset.mean(), color='r', ls='--')
mp.axhline(offsets_df.offset.mean() - 2 * offsets_df.offset.std(),
color='b',
ls='--')
mp.show()
#plot_existing_lc(row, 1, 1.5/12.)
avmag1, sdev1 = plot_new_lc(row, mjds, mag, err, period, target_name, 1,
1.5 / 12.)
print avmag1, sdev1
row.av_3p6 = avmag1
row.sdev_3p6 = sdev1
return (row)
## Also cleans up old runs ## for omegaCen only - doesn't apply for Sgr stream, orphan stream etc: ## Aperture correction flux_epoch_1 = target_stem + '_e1_' + new_chan aperture_correction_photometry.apcor_photo(flux_epoch_1) cat_name = 'globular' ## The 2.0 on the input here refers to the sigma clipping, not the channel apcor, sdev_apcor = calculate_aperture_correction_testing.calc_apcor(flux_epoch_1, 'apcor.raw', 2.5, target_stem, 0.3) apply_aperture_correction.apply_apcor(target_stem + '_e1_' + new_chan + '_dn.alf', apcor, num_chan) ## Calibrate all other epochs calibrate_all_epochs.calibrate(target_stem + '_' + new_chan + '.mch') ### August 18 - 3:12pm - pipeline works to here. Need to fix location correction now some naming conventions have been changed. ## location correction all_location_corrections.location_corr(target_stem, new_chan) print "Calibration complete" print "Individual epochs are in " + target_stem + "_epoch_' + new_chan + '_dn.cal files" print "Matched file is " + target_stem + '_' + new_chan + '.cal'
def calibrate_and_plot(row):
directory_switcher(row, 0)
survey_ident = row['survey_ident']
ra = row['ra']
dec = row['dec']
period = row['period']
target_name = row['target_name']
channel = 1 ### hardwired to channel 1 here
if (channel == 1 or channel == '3p6um' or channel == '1'): new_chan = '3p6um'
elif (channel == 2 or channel == '4p5um' or channel == '2'): new_chan = '4p5um'
else:
print 'invalid channel'
exit(1)
if new_chan == '3p6um': num_chan = 1
if new_chan == '4p5um': num_chan = 2
target_stem = sgr_setup.get_target_stem(survey_ident)
dir_name = re.sub('\.', '_', survey_ident)
dir_name = re.sub('-', '', dir_name)
directory = '/Users/vs522/Dropbox/TRACCS/TRACCS_Output/' + dir_name + '/' + dir_name + '_' + new_chan
os.chdir(directory)
if (len(glob.glob(target_stem + '*' + new_chan +'*.alf'))==0):
print 'You need to run ALLFRAME before you can calibrate the photometry'
print 'This is the CALIBRATION ONLY script'
print 'Run ``globular_pipeline_anychannel.py`` to do the combined photometry and calibration script'
exit(1)
flux_epoch_1 = target_stem + '_e1_' + new_chan
aperture_correction_photometry.apcor_photo(flux_epoch_1)
apcor, sdev_apcor = calculate_aperture_correction_testing.calc_apcor(flux_epoch_1, 'apcor.raw', 3, target_stem, 0.3)
apply_aperture_correction.apply_apcor(target_stem + '_e1_' + new_chan + '_dn.alf', apcor, num_chan)
calibrate_all_epochs.calibrate(target_stem + '_' + new_chan + '.mch')
all_location_corrections.location_corr(target_stem, new_chan)
robust_offset_calculator(row)
#make_rrl_finder_chart(target_stem, ra, dec)
mch_file = target_stem + '_3p6um_cal.mch'
phot_file = target_stem + '_3p6um.cal'
make_rrl_finder_chart(survey_ident, ra, dec)
mag, err = find_which_star(target_stem, ra, dec)
mjds = grab_mjds(mch_file)
#plot_a_lc(target_stem, target_name, period, mjds, mag, err)
#mosaic.save(target_stem + '_location.pdf')
offsets_df = pd.read_csv(target_stem + '_3p6um_cal.off_log', delim_whitespace=True, header=None, names=('obs', 'offset', 'sdev', 'nstars'))
mp.close()
mp.clf()
mp.errorbar(offsets_df.obs, offsets_df.offset, yerr=offsets_df.sdev, color='k', ls='none')
mp.plot(offsets_df.obs, offsets_df.offset, 'ko', ls='none')
mp.axhline(offsets_df.offset.mean(), color='r', ls='--')
mp.axhline(offsets_df.offset.mean()- 2*offsets_df.offset.std(), color='b', ls='--')
mp.show()
#plot_existing_lc(row, 1, 1.5/12.)
avmag1, sdev1 = plot_new_lc(row, mjds, mag, err, period, target_name, 1, 1.5/12.)
print avmag1, sdev1
row.av_3p6 = avmag1
row.sdev_3p6 = sdev1
return(row)
print "ALLFRAME complete" ## Begin calibration process ## Aperture correction flux_epoch_1 = target_stem + '_e1_' + new_chan aperture_correction_photometry.apcor_photo(flux_epoch_1) cat_name = 'globular' ## The 2.0 on the input here refers to the sigma clipping, not the channel apcor, sdev_apcor = calculate_aperture_correction_testing.calc_apcor(flux_epoch_1, 'apcor.raw', 2.0, target_stem) apply_aperture_correction.apply_apcor(target_stem + '_e1_' + new_chan + '_dn.alf', apcor, num_chan) ## Calibrate all other epochs calibrate_all_epochs.calibrate(target_stem + '_' + new_chan + '.mch') ## location correction all_location_corrections.location_corr(target_stem, new_chan) print "Calibration complete" print "Individual epochs are in " + target_stem + "_epoch_' + new_chan + '_dn.cal files" print "Matched file is " + target_stem + '_' + new_chan + '.cal'
