def setUp(self):
self._clean_up()
self._repository = XnatRepo(project_id=self.project,
server=SERVER,
cache_dir=self.cache_dir)
self._create_project()
self.BASE_CLASS.setUp(self)
local_repository = BasicRepo(self.project_dir)
tree = local_repository.tree()
repo = XnatRepo(SERVER, self.project, '/tmp')
with repo:
for node in tree:
for fileset in node.filesets:
# Need to forcibly change the repository to be XNAT
fileset = copy(fileset)
fileset.format = fileset.detect_format(self.REF_FORMATS)
fileset._repository = repo
fileset.put()
for field in node.fields:
# Need to forcibly change the repository to be XNAT
field = copy(field)
field._repository = repo
field.put()
for record in node.records:
repo.put_record(record)
def setUp(self):
self._clean_up()
self._dataset = XnatRepo(
server=SERVER, cache_dir=self.cache_dir).dataset(self.project)
self._create_project()
self.BASE_CLASS.setUp(self)
local_dataset = Dataset(self.project_dir, depth=self.dataset_depth)
temp_dataset = XnatRepo(SERVER, '/tmp').dataset(self.project)
with temp_dataset.repository:
for node in local_dataset.tree:
for fileset in node.filesets:
# Need to forcibly change the repository to be XNAT
fileset = copy(fileset)
fileset.format = fileset.detect_format(self.REF_FORMATS)
fileset._dataset = temp_dataset
fileset.put()
for field in node.fields:
# Need to forcibly change the repository to be XNAT
field = copy(field)
field._dataset = temp_dataset
field.put()
for record in node.records:
temp_dataset.put_record(record)
