def do_train(sess, args):
# set CPU as the default device for the graph. Some of the operations will be moved to GPU later.
with tf.device('/cpu:0'):
# Images and labels placeholders
images_ph = tf.placeholder(tf.float32,
shape=(None, ) + tuple(args.processed_size),
name='input')
labels_ph = tf.placeholder(tf.int32, shape=(None), name='label')
# a placeholder for determining if we train or validate the network. This placeholder will be used to set dropout rates and batchnorm paramaters.
is_training_ph = tf.placeholder(tf.bool, name='is_training')
#epoch number
epoch_number = tf.get_variable(
'epoch_number', [],
dtype=tf.int32,
initializer=tf.constant_initializer(0),
trainable=False,
collections=[tf.GraphKeys.GLOBAL_VARIABLES, SAVE_VARIABLES])
global_step = tf.get_variable(
'global_step', [],
dtype=tf.int32,
initializer=tf.constant_initializer(0),
trainable=False,
collections=[tf.GraphKeys.GLOBAL_VARIABLES, SAVE_VARIABLES])
# Weight Decay policy
wd = utils.get_policy(args.WD_policy, args.WD_details)
# Learning rate decay policy (if needed)
lr = utils.get_policy(args.LR_policy, args.LR_details)
# Create an optimizer that performs gradient descent.
optimizer = utils.get_optimizer(args.optimizer, lr)
# build the computational graph using the provided configuration.
dnn_model = model(images_ph,
labels_ph,
utils.loss,
optimizer,
wd,
args.architecture,
args.num_classes,
is_training_ph,
args.transfer_mode,
num_gpus=args.num_gpus)
# Create a pipeline to read data from disk
# a placeholder for setting the input pipeline batch size. This is employed to ensure that we feed each validation example only once to the network.
# Because we only use 1 GPU for validation, the validation batch size should not be more than 512.
batch_size_tf = tf.placeholder_with_default(min(512, args.batch_size),
shape=())
# A data loader pipeline to read training images and their labels
train_loader = loader(args.train_info, args.delimiter, args.raw_size,
args.processed_size, True,
args.chunked_batch_size, args.num_prefetch,
args.num_threads, args.path_prefix, args.shuffle)
# The loader returns images, their labels, and their paths
images, labels, info = train_loader.load()
# If validation data are provided, we create an input pipeline to load the validation data
if args.run_validation:
val_loader = loader(args.val_info, args.delimiter, args.raw_size,
args.processed_size, False, batch_size_tf,
args.num_prefetch, args.num_threads,
args.path_prefix)
val_images, val_labels, val_info = val_loader.load()
# Get training operations to run from the deep learning model
train_ops = dnn_model.train_ops()
# Build an initialization operation to run below.
init = tf.group(tf.global_variables_initializer(),
tf.local_variables_initializer())
sess.run(init)
if args.retrain_from is not None:
dnn_model.load(sess, args.retrain_from)
# Set the start epoch number
start_epoch = sess.run(epoch_number + 1)
# Start the queue runners.
coord = tf.train.Coordinator()
threads = tf.train.start_queue_runners(sess=sess, coord=coord)
# Setup a summary writer
summary_writer = tf.summary.FileWriter(args.log_dir, sess.graph)
# The main training loop
for epoch in range(start_epoch, start_epoch + args.num_epochs):
# update epoch_number
sess.run(epoch_number.assign(epoch))
print("Epoch %d of %d started" %
(epoch, start_epoch + args.num_epochs - 1))
# Trainig batches
for step in range(args.num_batches):
sess.run(global_step.assign(step + epoch * args.num_batches))
# train the network on a batch of data (It also measures time)
start_time = time.time()
# load a batch from input pipeline
img, lbl = sess.run([images, labels],
options=args.run_options,
run_metadata=args.run_metadata)
# train on the loaded batch of data
_, loss_value, top1_accuracy, topn_accuracy = sess.run(
train_ops,
feed_dict={
images_ph: img,
labels_ph: lbl,
is_training_ph: True
},
options=args.run_options,
run_metadata=args.run_metadata)
duration = time.time() - start_time
# Check for errors
assert not np.isnan(
loss_value), 'Model diverged with loss = NaN'
# Logging every ten batches and writing tensorboard summaries every hundred batches
if step % 10 == 0:
num_examples_per_step = args.chunked_batch_size * args.num_gpus
examples_per_sec = num_examples_per_step / duration
sec_per_batch = duration / args.num_gpus
# Log
format_str = (
'%s: epoch %d of %d, step %d of %d, loss = %.2f, Top-1 = %.2f Top-'
+ str(args.top_n) +
' = %.2f (%.1f examples/sec; %.3f sec/batch)')
print(
format_str %
(datetime.now(), epoch, start_epoch + args.num_epochs -
1, step, args.num_batches, loss_value, top1_accuracy,
topn_accuracy, examples_per_sec, sec_per_batch))
sys.stdout.flush()
if step % 100 == 0:
summary_str = sess.run(tf.summary.merge_all(),
feed_dict={
images_ph: img,
labels_ph: lbl,
is_training_ph: True
})
summary_writer.add_summary(summary_str,
args.num_batches * epoch + step)
if args.log_debug_info:
summary_writer.add_run_metadata(
run_metadata, 'epoch%d step%d' % (epoch, step))
# Save the model checkpoint periodically after each training epoch
checkpoint_path = os.path.join(args.log_dir, args.snapshot_prefix)
dnn_model.save(sess, checkpoint_path, global_step=epoch)
print("Epoch %d of %d ended. a checkpoint saved at %s" %
(epoch, start_epoch + args.num_epochs - 1, args.log_dir))
sys.stdout.flush()
# if validation data are provided, evaluate accuracy on the validation set after the end of each epoch
if args.run_validation:
print("Evaluating on validation set")
total_loss = utils.AverageMeter(
) # Measures cross entropy loss
top1 = utils.AverageMeter() # Measures top-1 accuracy
topn = utils.AverageMeter() # Measures top-n accuracy
# The validation loop
for step in range(args.num_val_batches):
# Load a batch of data
val_img, val_lbl = sess.run(
[val_images, val_labels],
feed_dict={
batch_size_tf:
args.num_val_samples % min(512, args.batch_size)
} if step == args.num_val_batches - 1 else None,
options=args.run_options,
run_metadata=args.run_metadata)
# validate the network on the loaded batch
val_loss, top1_predictions, topn_predictions = sess.run(
[train_ops[1], train_ops[2], train_ops[3]],
feed_dict={
images_ph: val_img,
labels_ph: val_lbl,
is_training_ph: False
},
options=args.run_options,
run_metadata=args.run_metadata)
current_batch_size = val_lbl.shape[0]
total_loss.update(val_loss, current_batch_size)
top1.update(top1_predictions, current_batch_size)
topn.update(topn_predictions, current_batch_size)
if step % 10 == 0 or step == args.num_val_batches - 1:
print(
"Validation step %d of %d, Loss %.2f, Top-1 Accuracy %.2f, Top-%d Accuracy %.2f "
% (step, args.num_val_batches, total_loss.avg,
top1.avg, args.top_n, topn.avg))
sys.stdout.flush()
coord.request_stop()
coord.join(threads)
sess.close()
def do_evaluate(sess, args):
with tf.device('/cpu:0'):
# Images and labels placeholders
images_ph = tf.placeholder(tf.float32,
shape=(None, ) + tuple(args.processed_size),
name='input')
labels_ph = tf.placeholder(tf.int32, shape=(None), name='label')
# a placeholder for determining if we train or validate the network. This placeholder will be used to set dropout rates and batchnorm paramaters.
is_training_ph = tf.placeholder(tf.bool, name='is_training')
# build a deep learning model using the provided configuration
dnn_model = model(images_ph, labels_ph, utils.loss, None, 0.0,
args.architecture, args.num_classes, is_training_ph,
args.transfer_mode)
# creating an input pipeline to read data from disk
# a placeholder for setting the input pipeline batch size. This is employed to ensure that we feed each validation example only once to the network.
batch_size_tf = tf.placeholder_with_default(args.batch_size, shape=())
# a data loader pipeline to read test data
val_loader = loader(args.val_info,
args.delimiter,
args.raw_size,
args.processed_size,
False,
batch_size_tf,
args.num_prefetch,
args.num_threads,
args.path_prefix,
inference_only=args.inference_only)
# if we want to do inference only (i.e. no label is provided) we only load images and their paths
if not args.inference_only:
val_images, val_labels, val_info = val_loader.load()
else:
val_images, val_info = val_loader.load()
# get evaluation operations from the dnn model
eval_ops = dnn_model.evaluate_ops(args.inference_only)
# Build an initialization operation to run below.
init = tf.group(tf.global_variables_initializer(),
tf.local_variables_initializer())
sess.run(init)
# Load pretrained parameters from disk
dnn_model.load(sess, args.log_dir)
coord = tf.train.Coordinator()
threads = tf.train.start_queue_runners(sess=sess, coord=coord)
# evaluation
if not args.inference_only:
total_loss = utils.AverageMeter() # Measures cross entropy loss
top1 = utils.AverageMeter() # Measures top-1 accuracy
topn = utils.AverageMeter() # Measures top-n accuracy
# Open an output file to write predictions
out_file = open(args.save_predictions, 'w')
predictions_format_str = ('%d, %s, %s, %s, %s\n')
for step in range(args.num_val_batches):
# Load a batch of data
val_img, val_lbl, val_inf = sess.run(
[val_images, val_labels, val_info],
feed_dict={
batch_size_tf: args.num_val_samples % args.batch_size
} if step == args.num_val_batches - 1 else None)
# Evaluate the network on the loaded batch
val_loss, top1_predictions, topn_predictions, topnguesses, topnconf = sess.run(
eval_ops,
feed_dict={
images_ph: val_img,
labels_ph: val_lbl,
is_training_ph: False
},
options=args.run_options,
run_metadata=args.run_metadata)
current_batch_size = val_lbl.shape[0]
total_loss.update(val_loss, current_batch_size)
top1.update(top1_predictions, current_batch_size)
topn.update(topn_predictions, current_batch_size)
print(
'Batch Number: %d of %d, Top-1 Hit: %d, Top-%d Hit: %d, Loss %.2f, Top-1 Accuracy: %.2f, Top-%d Accuracy: %.2f'
%
(step, args.num_val_batches, top1.sum, args.top_n,
topn.sum, total_loss.avg, top1.avg, args.top_n, topn.avg))
# log results into an output file
for i in range(0, val_inf.shape[0]):
out_file.write(
predictions_format_str %
(step * args.batch_size + i + 1, val_inf[i],
val_loader.label_dict[val_lbl[i]], ', '.join(
'%d' % item
for item in topnguesses[i]), ', '.join(
'%.4f' % item for item in topnconf[i])))
out_file.flush()
out_file.close()
#inference
else:
# Open an output file to write predictions
out_file = open(args.save_predictions, 'w')
predictions_format_str = ('%d, %s, %s, %s\n')
for step in range(args.num_val_batches):
# Load a batch of data
val_img, val_inf = sess.run(
[val_images, val_info],
feed_dict={
batch_size_tf: args.num_val_samples % args.batch_size
} if step == args.num_val_batches - 1 else None)
# Run the network on the loaded batch
topnguesses, topnconf = sess.run(
eval_ops,
feed_dict={
images_ph: val_img,
is_training_ph: False
},
options=args.run_options,
run_metadata=args.run_metadata)
print('Batch Number: %d of %d is done' %
(step, args.num_val_batches))
# Log to an output file
for i in range(0, val_inf.shape[0]):
out_file.write(
predictions_format_str %
(step * args.batch_size + i + 1, val_inf[i], ', '.join(
'%d' % item for item in topnguesses[i]), ', '.join(
'%.4f' % item for item in topnconf[i])))
out_file.flush()
out_file.close()
coord.request_stop()
coord.join(threads)
sess.close()
