def get_cols(self, lines):
"""Initialize Column objects from a multi-line ASCII header
Parameters
----------
lines : `list`
List of table lines
"""
re_name_def = re.compile("^\s*%\s+(?P<colname>\w+)")
self.names = []
for line in lines:
if not line.startswith('%'):
break # End of header lines
else:
match = re_name_def.search(line)
if match:
self.names.append(match.group('colname'))
if not self.names:
raise core.InconsistentTableError(
'No column names found in Omega header')
self.cols = []
for n in self.names:
col = core.Column(name=n)
self.cols.append(col)
def get_cols(self, lines):
"""Initialize Column objects from a multi-line ASCII header
Parameters
----------
lines : `list`
List of table lines
"""
re_name_def = re.compile(r'^\s*%\s+(?P<colname>\w+)')
self.names = []
for line in lines:
if not line: # ignore empty lines in header (windows)
continue
if not line.startswith('%'): # end of header lines
break
match = re_name_def.search(line)
if match:
self.names.append(match.group('colname'))
if not self.names:
raise core.InconsistentTableError(
'No column names found in Omega header')
self.cols = [] # pylint: disable=attribute-defined-outside-init
for name in self.names:
col = core.Column(name=name)
self.cols.append(col)
def get_cols(self, lines):
"""Initialize Column objects from a multi-line ASCII header
Parameters
----------
lines : `list`
List of table lines
"""
re_name_def = re.compile(
r'^\s*#\s+' # whitespace and comment marker
r'(?P<colnumber>[0-9]+)\s+-\s+' # number of column
r'(?P<colname>(.*))'
)
self.names = []
include_cuts = False
for line in lines:
if not line: # ignore empty lines in header (windows)
continue
if not line.startswith('# '): # end of header lines
break
if line.startswith('# -/+'):
include_cuts = True
else:
match = re_name_def.search(line)
if match:
self.names.append(match.group('colname').rstrip())
if not self.names:
raise core.InconsistentTableError(
'No column names found in cWB header')
if include_cuts:
self.cols = [ # pylint: disable=attribute-defined-outside-init
core.Column(name='selection cut 1'),
core.Column(name='selection cut 2'),
]
else:
self.cols = [] # pylint: disable=attribute-defined-outside-init
for name in self.names:
col = core.Column(name=name)
self.cols.append(col)
def get_cols(self, lines):
"""Initialize Column objects from a multi-line ASCII header
Parameters
----------
lines : `list`
List of table lines
"""
re_name_def = re.compile(
"^\s*#\s+" # whitespace and comment marker
"(?P<colnumber>[0-9]+)\s+-\s+" # number of column
"(?P<colname>(.*))"
)
self.names = []
for line in lines:
if not line.startswith('# '):
break # End of header lines
elif line.startswith('# -/+'):
include_cuts = True
else:
match = re_name_def.search(line)
if match:
self.names.append(match.group('colname').rstrip())
if not self.names:
raise core.InconsistentTableError(
'No column names found in cWB header')
if include_cuts:
self.cols = [
core.Column(name='selection cut 1'),
core.Column(name='selection cut 2'),
]
else:
self.cols = []
for n in self.names:
col = core.Column(name=n)
self.cols.append(col)
def setup(self):
self.lst = []
self.lst.append([random.randint(-500, 500) for i in range(1000)])
self.lst.append([random.random() * 500 - 500 for i in range(1000)])
self.lst.append([
''.join([random.choice(uppercase) for j in range(6)])
for i in range(1000)
])
self.cols = [core.Column(str(i + 1)) for i in range(3)]
for col, x in izip(self.cols, self.lst):
col.data = x
self.table_cols = [table.Column(x) for x in self.lst]
self.outputter = core.TableOutputter()
self.table = table.Table()
def setup(self):
self.lines = []
options = [['a b c d'], ['a b c \\', 'd'], ['a b \\', 'c \\', 'd'],
['a b \\', 'c d'], ['a \\', 'b c \\', 'd']]
for i in range(1000):
self.lines.extend(options[i % 5])
options = ['"a\tbc\t\td"', 'ab cd', '\tab\t\tc\td', 'a \tb \tcd']
self.line = ''.join([options[i % 4] for i in range(1000)])
self.vals = [randword() for i in range(1000)]
self.csv_line = ','.join([str(x) for x in self.vals])
lst = []
lst.append([random.randint(-500, 500) for i in range(1000)])
lst.append([random.random() * 500 - 500 for i in range(1000)])
lst.append([
''.join([random.choice(uppercase) for j in range(6)])
for i in range(1000)
])
self.cols = [core.Column(str(i + 1)) for i in range(3)]
for col, x in izip(self.cols, lst):
col.str_vals = [str(s) for s in x]