def mast_authenticate(token=None):
"""Verify MAST authentication status, login if needed."""
if Mast.authenticated() is False:
if token is None:
raise ValueError(
'You are not authenticated in MAST. Please provide a valid token.'
)
else:
Mast.login(token=token)
def test_invalid_query():
"""Test that the mnemonic query for an unauthorized user fails."""
Mast.logout()
mnemonic_identifier = 'IMIR_HK_ICE_SEC_VOLT4'
start_time = Time('2019-01-16 00:00:00.000', format='iso')
end_time = Time('2019-01-16 00:01:00.000', format='iso')
try:
query_single_mnemonic(mnemonic_identifier, start_time, end_time, token='1234')
except RuntimeError:
pass
def test_invalid_query():
"""Test that the mnemonic query for an unauthorized user fails."""
Mast.logout()
mnemonic_identifier = 'IMIR_HK_ICE_SEC_VOLT4'
start_time = Time('2019-01-16 00:00:00.000', format='iso')
end_time = Time('2019-01-16 00:01:00.000', format='iso')
with pytest.raises((ValueError, RuntimeError)) as error_message:
query_single_mnemonic(mnemonic_identifier, start_time, end_time, token='1234')
assert 'You are not authenticated in MAST' in str(error_message.value) or \
'Must be logged in as an authorized user' in str(error_message.value)
def get_mast_token(request=None):
"""Return MAST token from either Astroquery.Mast, webpage cookies, the
JWQL configuration file, or an environment variable.
Parameters
----------
request : HttpRequest object
Incoming request from the webpage
Returns
-------
token : str or None
User-specific MAST token string, if available
"""
if Mast.authenticated():
print('Authenticated with Astroquery MAST magic')
return None
else:
try:
# check if token is available via config file
check_config_for_key('mast_token')
token = get_config()['mast_token']
print('Authenticated with config.json MAST token.')
return token
except (KeyError, ValueError):
# check if token is available via environment variable
# see https://auth.mast.stsci.edu/info
try:
token = os.environ['MAST_API_TOKEN']
print('Authenticated with MAST token environment variable.')
return token
except KeyError:
return None
def mast_request(version):
"""Access MAST and get JSON version of the keyword dictionary.
Parameters
----------
version : string
Keyword dictionary version
Returns
-------
kwd_dict : json object
Keyword dictionary as a JSON nested dictionary object
"""
service = "Mast.Jwst.Keywords"
params = {
"filename": "all.json",
"version": str(version),
"cacheBreaker": time()
}
resp = Mast.service_request_async(service, params)
kwd_dict = resp[0].json()
return kwd_dict
def test_astroquery_mast():
"""Test if the astroquery.mast service can complete a request"""
service = 'Mast.Caom.Filtered'
params = {'columns': 'COUNT_BIG(*)', 'filters': [], 'pagesize': 1,
'page': 1}
response = Mast.service_request_async(service, params)
result = response[0].json()
assert result['status'] == 'COMPLETE'
def query_single_mnemonic(mnemonic_identifier,
start_time,
end_time,
token=None):
"""Query DMS EDB to get the mnemonic readings in a time interval.
The underlying MAST service returns data that include the
datapoint preceding the requested start time and the datapoint
that follows the requested end time.
Parameters
----------
mnemonic_identifier : str
Telemetry mnemonic identifier, e.g. 'SA_ZFGOUTFOV'
start_time : astropy.time.Time instance
Start time
end_time : astropy.time.Time instance
End time
token : str
MAST token
Returns
-------
data, meta, info : tuple
Table and two dictionaries with the results of the query
"""
mast_authenticate(token=token)
if not is_valid_mnemonic(mnemonic_identifier):
raise RuntimeError('Mnemonic identifier is invalid!')
if not isinstance(start_time, Time):
raise RuntimeError(
'Please specify a valid start time (instance of astropy.time.core.Time)'
)
if not isinstance(end_time, Time):
raise RuntimeError(
'Please specify a valid end time (instance of astropy.time.core.Time)'
)
parameters = {
'mnemonic': mnemonic_identifier,
'start': start_time.iso,
'end': end_time.iso
}
result = Mast.service_request_async(mast_edb_timeseries_service,
parameters)
data, meta = process_mast_service_request_result(result)
# get auxiliary information (description, subsystem, ...)
info = query_mnemonic_info(mnemonic_identifier)
return data, meta, info
def log_into_mast(request):
"""Login via astroquery.mast if user authenticated in web app.
Parameters
----------
request : HttpRequest object
Incoming request from the webpage
"""
if Mast.authenticated():
return True
# get the MAST access token if present
access_token = str(get_mast_token(request))
# authenticate with astroquery.mast if necessary
if access_token != 'None':
Mast.login(token=access_token)
return Mast.authenticated()
else:
return False
def mnemonic_inventory():
"""Return all mnemonics in the DMS engineering database.
Returns
-------
data : astropy.table.Table
Table representation of the mnemonic inventory.
meta : dict
Additional information returned by the query.
"""
out = Mast.service_request_async(mast_edb_mnemonic_service, {})
data, meta = process_mast_service_request_result(out)
return data, meta
def get_thumbnails_all_instruments(instruments):
"""Return a list of thumbnails available in the filesystem for all
instruments given requested parameters.
Returns
-------
thumbnails : list
A list of thumbnails available in the filesystem for the
given instrument.
"""
# Make sure instruments are of the proper format (e.g. "Nircam")
thumbnail_list = []
for inst in instruments: # JWST_INSTRUMENT_NAMES:
instrument = inst[0].upper() + inst[1:].lower()
### adjust query based on request
# Query MAST for all rootnames for the instrument
service = "Mast.Jwst.Filtered.{}".format(instrument)
params = {
"columns":
"filename, expstart, filter, readpatt, date_beg, date_end, apername, exp_type",
"filters": [{
"paramName": "expstart",
"values": [{
"min": 57404.04,
"max": 57404.07
}],
}]
}
response = Mast.service_request_async(service, params)
results = response[0].json()['data']
# Parse the results to get the rootnames
filenames = [result['filename'].split('.')[0] for result in results]
# Get list of all thumbnails
thumbnails = glob.glob(
os.path.join(THUMBNAIL_FILESYSTEM, '*', '*.thumb'))
thumbnail_list.extend(thumbnails)
# Get subset of preview images that match the filenames
thumbnails = [
os.path.basename(item) for item in thumbnail_list
if os.path.basename(item).split('_integ')[0] in filenames
]
return thumbnails
def query_single_mnemonic(mnemonic_identifier, start_time, end_time):
"""Query DMS EDB to get the mnemonic readings in a time interval.
Parameters
----------
mnemonic_identifier : str
Telemetry mnemonic identifier, e.g. 'SA_ZFGOUTFOV'
start_time : astropy.time.Time instance
Start time
end_time : astropy.time.Time instance
End time
Returns
-------
mnemonic : instance of EdbMnemonic
Object that contains the returned data
"""
if not isinstance(start_time, astropy.time.core.Time):
raise RuntimeError(
'Please specify a valid start time (instance of astropy.time.core.Time)'
)
if not isinstance(end_time, astropy.time.core.Time):
raise RuntimeError(
'Please specify a valid end time (instance of astropy.time.core.Time)'
)
if not isinstance(mnemonic_identifier, str):
raise RuntimeError('Please provide mnemonic_identifier of type string')
parameters = {
'mnemonic': mnemonic_identifier,
'start': start_time.iso,
'end': end_time.iso
}
result = Mast.service_request_async(mast_edb_timeseries_service,
parameters)
data, meta = process_mast_service_request_result(result)
# get auxiliary information (description, subsystem, ...)
info = query_mnemonic_info(mnemonic_identifier)
# create and return instance
mnemonic = EdbMnemonic(mnemonic_identifier, start_time, end_time, data,
meta, info)
return mnemonic
def get_filenames_by_instrument(instrument, restriction='all'):
"""Returns a list of filenames that match the given ``instrument``.
Parameters
----------
instrument : str
The instrument of interest (e.g. `FGS`).
restriction : str
If ``all``, all filenames will be returned. If ``public``,
only publicly-available filenames will be returned. If
``proprietary``, only proprietary filenames will be returned.
Returns
-------
filenames : list
A list of files that match the given instrument.
"""
service = INSTRUMENT_SERVICE_MATCH[instrument]
# Query for filenames
params = {"columns": "filename, isRestricted", "filters": []}
response = Mast.service_request_async(service, params)
result = response[0].json()
# Determine filenames to return based on restriction parameter
if restriction == 'all':
filenames = [item['filename'] for item in result['data']]
elif restriction == 'public':
filenames = [
item['filename'] for item in result['data']
if item['isRestricted'] is False
]
elif restriction == 'proprietary':
filenames = [
item['filename'] for item in result['data']
if item['isRestricted'] is True
]
else:
raise KeyError(
'{} is not a valid restriction level. Use "all", "public", or "proprietary".'
.format(restriction))
return filenames
def get_files_for_instrument(self, instrument):
"""Given an instrument, query the database for all filenames
and paths associated with said instrument
Parameters
----------
instrument : str
Name of JWST instrument
Returns
-------
filepaths: list
List of all filepaths in database for the provided
instrument
filenames: list
List of all filenames in database for the provided
instrument
"""
instrument = instrument.upper()
if self.db_type == 'SQL':
results = self.session.query(self.ObservationWebtest)\
.filter(self.ObservationWebtest.instrument == instrument)
elif self.db_type == 'MAST':
params = {"columns": "*", "filters": []}
response = Mast.service_request_async(self.service, params)
results = response[0].json()['data']
filepaths = []
filenames = []
for i in results:
if self.db_type == 'SQL':
filename = i.filename
elif self.db_type == 'MAST':
filename = i['filename']
prog_id = filename[2:7]
file_path = os.path.join('jw' + prog_id, filename)
filepaths.append(file_path)
filenames.append(filename)
session.close()
return filepaths, filenames
def query_mnemonic_info(mnemonic_identifier):
"""Query the EDB to return the mnemonic description.
Parameters
----------
mnemonic_identifier : str
Telemetry mnemonic identifier, e.g. ``SA_ZFGOUTFOV``
Returns
-------
info : dict
Object that contains the returned data
"""
parameters = {"mnemonic": "{}".format(mnemonic_identifier)}
result = Mast.service_request_async(mast_edb_dictionary_service,
parameters)
info = process_mast_service_request_result(result, data_as_table=False)[0]
return info
def get_preview_images_by_instrument(inst):
"""Return a list of preview images available in the filesystem for
the given instrument.
Parameters
----------
inst : str
The instrument of interest (e.g. ``NIRCam``).
Returns
-------
preview_images : list
A list of preview images available in the filesystem for the
given instrument.
"""
# Make sure the instrument is of the proper format (e.g. "Nircam")
instrument = inst[0].upper() + inst[1:].lower()
# Query MAST for all rootnames for the instrument
service = "Mast.Jwst.Filtered.{}".format(instrument)
params = {"columns": "filename", "filters": []}
response = Mast.service_request_async(service, params)
results = response[0].json()['data']
# Parse the results to get the rootnames
filenames = [result['filename'].split('.')[0] for result in results]
# Get list of all preview_images
preview_images = glob.glob(
os.path.join(PREVIEW_IMAGE_FILESYSTEM, '*', '*.jpg'))
# Get subset of preview images that match the filenames
preview_images = [
os.path.basename(item) for item in preview_images
if os.path.basename(item).split('_integ')[0] in filenames
]
# Return only
return preview_images
def mnemonic_inventory():
"""Return all mnemonics in the DMS engineering database.
No authentication is required, this information is public.
Since this is a rather large and quasi-static table (~15000 rows),
it is cached using functools.
Returns
-------
data : astropy.table.Table
Table representation of the mnemonic inventory.
meta : dict
Additional information returned by the query.
"""
out = Mast.service_request_async(MAST_EDB_MNEMONIC_SERVICE, {})
data, meta = process_mast_service_request_result(out)
# convert numerical ID to str for homogenity (all columns are str)
data['tlmIdentifier'] = data['tlmIdentifier'].astype(str)
return data, meta
def get_instrument_proposals(instrument):
"""Return a list of proposals for the given instrument
Parameters
----------
instrument : str
Name of the JWST instrument
Returns
-------
proposals : list
List of proposals for the given instrument
"""
service = "Mast.Jwst.Filtered.{}".format(instrument)
params = {"columns": "program", "filters": []}
response = Mast.service_request_async(service, params)
results = response[0].json()['data']
proposals = list(set(result['program'] for result in results))
return proposals
def get_expstart(instrument, rootname):
"""Return the exposure start time (``expstart``) for the given
``rootname``.
The ``expstart`` is gathered from a query to the
``astroquery.mast`` service.
Parameters
----------
instrument : str
The instrument of interest (e.g. `FGS`).
rootname : str
The rootname of the observation of interest (e.g.
``jw86700006001_02101_00006_guider1``).
Returns
-------
expstart : float
The exposure start time of the observation (in MJD).
"""
file_set_name = '_'.join(rootname.split('_')[:-1])
service = INSTRUMENT_SERVICE_MATCH[instrument]
params = {
'columns': 'filename, expstart',
'filters': [{
'paramName': 'fileSetName',
'values': [file_set_name]
}]
}
response = Mast.service_request_async(service, params)
result = response[0].json()
if result['data'] == []:
expstart = 0
print("WARNING: no data")
else:
expstart = min([item['expstart'] for item in result['data']])
return expstart
def query_mnemonic_info(mnemonic_identifier, token=None):
"""Query the EDB to return the mnemonic description.
Parameters
----------
mnemonic_identifier : str
Telemetry mnemonic identifier, e.g. ``SA_ZFGOUTFOV``
token : str
MAST token
Returns
-------
info : dict
Object that contains the returned data
"""
parameters = {"mnemonic": "{}".format(mnemonic_identifier)}
result = Mast.service_request_async(MAST_EDB_DICTIONARY_SERVICE,
parameters)
info = process_mast_service_request_result(result, data_as_table=False)[0]
return info
def instrument_inventory(instrument,
dataproduct=JWST_DATAPRODUCTS,
add_filters=None,
add_requests=None,
caom=False,
return_data=False):
"""Get the counts for a given instrument and data product
Parameters
----------
instrument: str
The instrument name, i.e. one of ['niriss','nircam','nirspec',
'miri','fgs']
dataproduct: sequence, str
The type of data product to search
add_filters: dict
The ('paramName':'values') pairs to include in the 'filters'
argument of the request e.g. add_filters = {'filter':'GR150R'}
add_requests: dict
The ('request':'value') pairs to include in the request
e.g. add_requests = {'pagesize':1, 'page':1}
caom: bool
Query CAOM service
return_data: bool
Return the actual data instead of counts only
Returns
-------
int, dict
The number of database records that satisfy the search criteria
or a dictionary of the data if `return_data=True`
"""
filters = []
# Make sure the dataproduct is a list
if isinstance(dataproduct, str):
dataproduct = [dataproduct]
# Make sure the instrument is supported
if instrument.lower() not in [
ins.lower() for ins in JWST_INSTRUMENT_NAMES
]:
raise TypeError('Supported instruments include:',
JWST_INSTRUMENT_NAMES)
# CAOM service
if caom:
# Declare the service
service = 'Mast.Caom.Filtered'
# Set the filters
filters += [{
'paramName': 'obs_collection',
'values': ['JWST']
}, {
'paramName': 'instrument_name',
'values': [instrument]
}, {
'paramName': 'dataproduct_type',
'values': dataproduct
}]
# Instruent filtered service
else:
# Declare the service
service = 'Mast.Jwst.Filtered.{}'.format(instrument.title())
# Include additonal filters
if isinstance(add_filters, dict):
filters += [{
"paramName": name,
"values": [val]
} for name, val in add_filters.items()]
# Assemble the request
params = {
'columns': 'COUNT_BIG(*)',
'filters': filters,
'removenullcolumns': True
}
# Just get the counts
if return_data:
params['columns'] = '*'
# Add requests
if isinstance(add_requests, dict):
params.update(add_requests)
response = Mast.service_request_async(service, params)
result = response[0].json()
# Return all the data
if return_data:
return result
# Or just the counts
else:
return result['data'][0]['Column1']
def monitor_template_main():
""" The main function of the ``monitor_template`` module."""
# Example of logging
my_variable = 'foo'
logging.info('Some useful information: {}'.format(my_variable))
# Example of querying for a dataset via MAST API
service = "Mast.Jwst.Filtered.Niriss"
params = {
"columns": "filename",
"filters": [{
"paramName": "filter",
"values": ['F430M']
}]
}
response = Mast.service_request_async(service, params)
result = response[0].json()['data']
filename_of_interest = result[0][
'filename'] # jw00304002001_02102_00001_nis_uncal.fits
# Example of parsing a filename
filename_dict = filename_parser(filename_of_interest)
# Contents of filename_dict:
# {'program_id': '00304',
# 'observation': '002',
# 'visit': '001',
# 'visit_group': '02',
# 'parallel_seq_id': '1',
# 'activity': '02',
# 'exposure_id': '00001',
# 'detector': 'nis',
# 'suffix': 'uncal'}
# Example of locating a dataset in the filesystem
filesystem = get_config()['filesystem']
dataset = os.path.join(filesystem,
'jw{}'.format(filename_dict['program_id']),
filename_of_interest)
# Example of reading in dataset using jwst.datamodels
im = datamodels.open(dataset)
# Now have access to:
# im.data # Data array
# im.err # ERR array
# im.meta # Metadata such as header keywords
# Example of saving a file and setting permissions
im.save('some_filename.fits')
set_permissions('some_filename.fits')
# Example of creating and exporting a Bokeh plot
plt = Donut(im.data, plot_width=600, plot_height=600)
plt.sizing_mode = 'stretch_both' # Necessary for responsive sizing on web app
script, div = components(plt)
plot_output_dir = get_config()['outputs']
div_outfile = os.path.join(plot_output_dir, 'monitor_name',
filename_of_interest + "_component.html")
script_outfile = os.path.join(plot_output_dir, 'monitor_name',
filename_of_interest + "_component.js")
for outfile, component in zip([div_outfile, script_outfile],
[div, script]):
with open(outfile, 'w') as f:
f.write(component)
f.close()
set_permissions(outfile)
# Perform any other necessary code
well_named_variable = "Function does something."
result_of_second_function = second_function(well_named_variable)
def get_thumbnails_all_instruments(parameters):
"""Return a list of thumbnails available in the filesystem for all
instruments given requested MAST parameters and queried anomalies.
Parameters
----------
parameters: dict
A dictionary containing the following keys, some of which are dictionaries:
instruments
apertures
filters
detector
effexptm_min
effexptm_max
anomalies
Returns
-------
thumbnails : list
A list of thumbnails available in the filesystem for the
given instrument.
"""
anomalies = parameters['anomalies']
filenames = []
for inst in parameters['instruments']:
# Make sure instruments are of the proper format (e.g. "Nircam")
instrument = inst[0].upper() + inst[1:].lower()
# Query MAST for all rootnames for the instrument
service = "Mast.Jwst.Filtered.{}".format(instrument)
if (parameters['apertures'][inst.lower()] == []) and (parameters['detectors'][inst.lower()] == []) \
and (parameters['filters'][inst.lower()] == []) and (parameters['exposure_types'][inst.lower()] == []) \
and (parameters['read_patterns'][inst.lower()] == []):
params = {"columns": "*", "filters": []}
else:
query_filters = []
if (parameters['apertures'][inst.lower()] != []):
if instrument != "Nircam":
query_filters.append({
"paramName":
"pps_aper",
"values":
parameters['apertures'][inst.lower()]
})
if instrument == "Nircam":
query_filters.append({
"paramName":
"apername",
"values":
parameters['apertures'][inst.lower()]
})
if (parameters['detectors'][inst.lower()] != []):
query_filters.append({
"paramName":
"detector",
"values":
parameters['detectors'][inst.lower()]
})
if (parameters['filters'][inst.lower()] != []):
query_filters.append({
"paramName":
"filter",
"values":
parameters['filters'][inst.lower()]
})
if (parameters['exposure_types'][inst.lower()] != []):
query_filters.append({
"paramName":
"exp_type",
"values":
parameters['exposure_types'][inst.lower()]
})
if (parameters['read_patterns'][inst.lower()] != []):
query_filters.append({
"paramName":
"readpatt",
"values":
parameters['read_patterns'][inst.lower()]
})
params = {"columns": "*", "filters": query_filters}
response = Mast.service_request_async(service, params)
results = response[0].json()['data']
inst_filenames = [
result['filename'].split('.')[0] for result in results
]
filenames.extend(inst_filenames)
# Get list of all thumbnails
thumbnail_list = glob.glob(
os.path.join(THUMBNAIL_FILESYSTEM, '*', '*.thumb'))
# Get subset of preview images that match the filenames
thumbnails_subset = [
os.path.basename(item) for item in thumbnail_list
if os.path.basename(item).split('_integ')[0] in filenames
]
# Eliminate any duplicates
thumbnails_subset = list(set(thumbnails_subset))
# Determine whether or not queried anomalies are flagged
final_subset = []
if anomalies != {
'miri': [],
'nirspec': [],
'niriss': [],
'nircam': [],
'fgs': []
}:
for thumbnail in thumbnails_subset:
components = thumbnail.split('_')
rootname = ''.join((components[0], '_', components[1], '_',
components[2], '_', components[3]))
try:
instrument = filename_parser(thumbnail)['instrument']
thumbnail_anomalies = get_current_flagged_anomalies(
rootname, instrument)
if thumbnail_anomalies:
for anomaly in anomalies[instrument.lower()]:
if anomaly.lower() in thumbnail_anomalies:
# thumbnail contains an anomaly selected in the query
final_subset.append(thumbnail)
except KeyError:
print("Error with thumbnail: ", thumbnail)
else:
# if no anomalies are flagged, return all thumbnails from query
final_subset = thumbnails_subset
return list(set(final_subset))
def get_thumbnails_all_instruments(parameters):
"""Return a list of thumbnails available in the filesystem for all
instruments given requested MAST parameters and queried anomalies.
Parameters
----------
parameters: dict
A dictionary containing the following keys, some of which are dictionaries:
instruments
apertures
filters
detector
effexptm_min
effexptm_max
anomalies
Returns
-------
thumbnails : list
A list of thumbnails available in the filesystem for the
given instrument.
"""
anomalies = parameters['anomalies']
thumbnail_list = []
filenames = []
if parameters['instruments'] is None:
thumbnails = []
for inst in parameters['instruments']:
print("Retrieving thumbnails for", inst)
# Make sure instruments are of the proper format (e.g. "Nircam")
instrument = inst[0].upper() + inst[1:].lower()
# Query MAST for all rootnames for the instrument
service = "Mast.Jwst.Filtered.{}".format(instrument)
params = {
"columns":
"*",
"filters": [{
"paramName": "apername",
"values": parameters['apertures'][inst.lower()]
}, {
"paramName": "detector",
"values": parameters['detectors'][inst.lower()]
}, {
"paramName": "filter",
"values": parameters['filters'][inst.lower()]
}, {
"paramName": "exp_type",
"values": parameters['exposure_types'][inst.lower()]
}, {
"paramName": "readpatt",
"values": parameters['read_patterns'][inst.lower()]
}]
}
response = Mast.service_request_async(service, params)
results = response[0].json()['data']
for result in results:
filename = result['filename'].split('.')[0]
filenames.append(filename)
# Get list of all thumbnails
thumbnails = glob.glob(
os.path.join(THUMBNAIL_FILESYSTEM, '*', '*.thumb'))
thumbnail_list.extend(thumbnails)
# Get subset of preview images that match the filenames
thumbnails_subset = [
os.path.basename(item) for item in thumbnail_list
if os.path.basename(item).split('_integ')[0] in filenames
]
# Eliminate any duplicates
thumbnails_subset = list(set(thumbnails_subset))
# Determine whether or not queried anomalies are flagged
final_subset = []
for thumbnail in thumbnails_subset:
components = thumbnail.split('_')
rootname = '{}_{}_{}_{}'.format(components[0], components[1],
components[2], components[3])
try:
instrument = JWST_INSTRUMENT_NAMES_SHORTHAND[thumbnail.split("_")
[3][:3]]
thumbnail_anomalies = get_current_flagged_anomalies(
rootname, instrument)
if thumbnail_anomalies:
for anomaly in anomalies[instrument.lower()]:
if anomaly.lower() in thumbnail_anomalies:
print(thumbnail,
"contains an anomaly selected in the query")
final_subset.append(thumbnail)
except KeyError:
try:
instrument = JWST_INSTRUMENT_NAMES_SHORTHAND[thumbnail.split(
"_")[2][:3]]
thumbnail_anomalies = get_current_flagged_anomalies(
rootname, instrument)
if thumbnail_anomalies:
for anomaly in anomalies[instrument.lower()]:
if anomaly.lower() in thumbnail_anomalies:
print(thumbnail,
"contains an anomaly selected in the query")
final_subset.append(thumbnail)
except KeyError:
print("Error with thumbnail: ", thumbnail)
if not final_subset:
print("No images matched anomaly selection")
final_subset = thumbnails_subset
if not final_subset:
final_subset = thumbnails[:10]
return list(set(final_subset))
"""
import astropy
from astropy.table import Table
from astropy.time import Time
from astroquery.mast import Mast
from bokeh.embed import components
from bokeh.plotting import figure
from .utils import get_config
# should use oauth.register_oauth()?
settings = get_config()
mast_token = settings['mast_token']
Mast.login(token=mast_token)
# could eventually be moved to constants.py
mast_edb_timeseries_service = 'Mast.JwstEdb.GetTimeseries.All'
mast_edb_dictionary_service = 'Mast.JwstEdb.Dictionary'
mast_edb_mnemonic_service = 'Mast.JwstEdb.Mnemonics'
class EdbMnemonic:
"""Class to hold and manipulate results of DMS EngDB queries."""
def __init__(self, mnemonic_identifier, start_time, end_time, data, meta,
info):
"""Populate attributes.
Parameters
----------
