def leap_adjust(data, year):
data = atm.squeeze(data)
ndays = 365
if year is not None and atm.isleap(year):
ndays += 1
else:
# Remove NaN for day 366 in non-leap year
data = atm.subset(data, {'day' : (1, ndays)})
return data, ndays
import numpy as np import xray import pandas as pd import matplotlib.pyplot as plt import atmos as atm import merra from indices import onset_SJKE, summarize_indices, plot_index_years # ---------------------------------------------------------------------- # Compute SJ indices (Boos and Emmanuel 2009) datadir = atm.homedir() + 'datastore/merra/daily/' years = np.arange(1979, 2015) filestr = 'merra_uv850_40E-120E_60S-60N_' datafiles = [datadir + filestr + '%d.nc' % y for y in years] # Read daily data from each year ds = atm.combine_daily_years(['U', 'V'], datafiles, years) # Remove extra dimension from data u = atm.squeeze(ds['U']) v = atm.squeeze(ds['V']) # Calculate OCI index sjke = onset_SJKE(u, v) # Summary plot and timeseries in individual years summarize_indices(years, sjke['onset']) plot_index_years(sjke, suptitle='SJ', yearnm='Year', daynm='Day')
else:
dsyr = xray.concat((dsyr, ds), dim='day')
savefile = datafiles[y]
print('Saving to ' + savefile)
dsyr.to_netcdf(savefile)
# Read daily data from each year
plist = [200, 400, 600]
if plev is not None:
plist = np.union1d(plist, [plev])
T_p = {}
for p in plist:
T1 = atm.combine_daily_years('T', datafiles, years, yearname='year',
subset_dict={'plev' : (p, p)})
T_p[p] = atm.squeeze(T1)
Tbar = atm.combine_daily_years('Tbar', datafiles, years, yearname='year')
if plev is None:
T = Tbar
varname = 'TT200-600'
else:
T = T_p[plev]
varname = 'TT%d' % plev
# Calculate TT index
# The north region should go up to 35 N but there is some weirdness
# with the topography so I'm setting it to 30 N for now
north=(5, 30, 40, 100)
south=(-15, 5, 40, 100)
suptitle = varname + ' N=%s S=%s' % (str(north), str(south))
pcp_sm = atm.rolling_mean(pcp, nroll[name], axis=-1, center=True)
index[key] = get_onset_WLH(years, days, pcp_sm.values, threshold, key, pentad,
precip_jan)
# Unsmoothed pentad timeserires
key = 'WLH_%s_unsmth' % name
print(key)
index[key] = get_onset_WLH(years, days, pcp, threshold, key, pentad,
precip_jan)
# ----------------------------------------------------------------------
# OCI index (Wang et al 2009) and SJKE index (Boos and Emmanuel 2009)
ds = atm.combine_daily_years(['U', 'V'], ocifiles, years)
ds = ds.rename({'Year' : 'year', 'Day' : 'day'})
u850 = atm.squeeze(ds['U'])
v850 = atm.squeeze(ds['V'])
# OCI Index
index['OCI'] = indices.onset_OCI(u850, yearnm='year', daynm='day')
index['OCI'].attrs['title'] = 'OCI'
# SJKE Index
index['SJKE'] = indices.onset_SJKE(u850, v850, yearnm='year', daynm='day')
index['SJKE'].attrs['title'] = 'SJKE'
# ----------------------------------------------------------------------
# TT index (Goswami et al 2006)
# *** NOTES ****
# Need to trouble shoot TT index before using in anything final.
filestr = 'comp-onset_%s-%s-%s' % (onset_nm, savestr, vargroup)
atm.savefigs(savedir + filestr, 'pdf', merge=True)
plt.close('all')
# ======================================================================
# OLD STUFF
# ======================================================================
# ----------------------------------------------------------------------
# Cross-equatorial atmospheric heat fluxes
if run_eht:
keys = ['V*DSE950','V*MSE950']
eht = {key : data[key] for key in keys}
lat0 = 0.625
for key in eht:
eht[key] = atm.squeeze(atm.subset(eht[key], {'lat' : (lat0, lat0)}))
eht[key] = eht[key].mean(dim='year')
# Plot longitude-time contours
figsize = (10, 10)
ncont = 20
cmap = 'RdBu_r'
for key in eht:
plt.figure(figsize=figsize)
ehtplot = eht[key]
days = ehtplot['dayrel'].values
lon = ehtplot['XDim'].values
plt.contourf(lon, days, ehtplot, ncont, cmap=cmap)
plt.title('Cross-Equatorial ' + key)
plt.xlabel('Longitude')
plt.ylabel('Relative Day')
def calc_ubudget(datafiles, ndays, lon1, lon2, plev=200):
"""Calculate momentum budget for daily data in one year.
Keys of datafiles dict must be: U, V, DUDP, H, OMEGA, DOMEGADP, DUDTANA
"""
# Read data
data = xray.Dataset()
for nm in datafiles:
print('Reading ' + datafiles[nm])
with xray.open_dataset(datafiles[nm]) as ds:
if nm in ds.data_vars:
var = ds[nm]
else:
var = ds[nm + '%d' % plev]
if 'Day' in var.dims:
var = var.rename({'Day' : 'day'})
data[nm] = atm.squeeze(var)
data['PHI'] = atm.constants.g.values * data['H']
# Put zeros in for any missing variables (e.g. du/dp)
for nm in ['OMEGA', 'DUDP', 'DOMEGADP', 'DUDTANA']:
if nm not in data.data_vars:
data[nm] = 0.0 * data['U']
# Eddy decomposition
taxis = 0
for nm in data.data_vars:
print('Eddy decomposition for ' + nm)
comp = eddy_decomp(data[nm], ndays, lon1, lon2, taxis)
for compnm in comp:
data[compnm] = comp[compnm]
# Momentum budget calcs
# du/dt = sum of terms in ubudget
ubudget = xray.Dataset()
readme = 'Momentum budget: ACCEL = sum of all other data variables'
ubudget.attrs['readme'] = readme
ubudget.attrs['ndays'] = ndays
ubudget.attrs['lon1'] = lon1
ubudget.attrs['lon2'] = lon2
# Advective terms
keypairs = [ ('AVG', 'AVG'), ('AVG', 'ST'), ('ST', 'AVG')]
print('Computing advective terms')
for pair in keypairs:
print(pair)
ukey, flowkey = pair
u = data['U_' + ukey]
dudp = data['DUDP_' + ukey]
uflow = data['U_' + flowkey]
vflow = data['V_' + flowkey]
omegaflow = data['OMEGA_' + flowkey]
adv = advection(uflow, vflow, omegaflow, u, dudp)
for nm in adv.data_vars:
key = 'ADV_%s_%s_%s' % (ukey, flowkey, nm)
ubudget[key] = - adv[nm]
long_name = 'Advection of %s momentum by %s' % (ukey, flowkey)
ubudget[key].attrs['long_name'] = long_name
# EMFD terms
keys = ['TR', 'ST']
print('Computing EMFD terms')
for key in keys:
print(key)
u = data['U_' + key]
v = data['V_' + key]
omega = data['OMEGA_' + key]
dudp = data['DUDP_' + key]
domegadp = data['DOMEGADP_' + key]
emfd = fluxdiv(u, v, omega, dudp, domegadp)
for nm in emfd.data_vars:
ubudget['EMFC_%s_%s' % (key, nm)] = - emfd[nm]
# Coriolis terms
latlon = latlon_data(data['V_ST'])
lat = latlon['LAT']
f = atm.coriolis(lat)
ubudget['COR_AVG'] = data['V_AVG'] * f
ubudget['COR_ST'] = data['V_ST'] * f
# Pressure gradient terms
a = atm.constants.radius_earth.values
coslat = latlon['COSLAT']
lonrad = latlon['LONRAD']
londim = atm.get_coord(data['PHI_ST'], 'lon', 'dim')
ubudget['PGF_ST'] = - atm.gradient(data['PHI_ST'], lonrad, londim) / (a*coslat)
# Analysis increment for dU/dt
ubudget['ANA'] = data['DUDTANA']
# Time mean
print('Computing rolling time mean')
for nm in ubudget.data_vars:
ubudget[nm] = atm.rolling_mean(ubudget[nm], ndays, axis=taxis, center=True)
# Acceleration
nseconds = 60 * 60 * 24 * ndays
delta_u = np.nan * data['U']
u = data['U'].values
delta_u.values[ndays//2:-ndays//2] = (u[ndays:] - u[:-ndays]) / nseconds
ubudget['ACCEL'] = delta_u
return ubudget, data
def get_daily_data(varid, plev, years, datafiles, data, daymin=1,
daymax=366, yearnm='year'):
"""Return daily data (basic variable or calculated variable).
Data is read from datafiles if varnm is a basic variable.
If varnm is a calculated variable (e.g. potential temperature),
the base variables for calculation are provided in the dict data.
"""
years = atm.makelist(years)
datafiles = atm.makelist(datafiles)
if isinstance(plev, int) or isinstance(plev, float):
pres = atm.pres_convert(plev, 'hPa', 'Pa')
elif plev == 'LML' and 'PS' in data:
pres = data['PS']
else:
pres = None
def get_var(data, varnm, plev=None):
if plev is None:
plev = ''
elif plev == 'LML' and varnm == 'QV':
varnm = 'Q'
return data[varnm + str(plev)]
if var_type(varid) == 'calc':
print('Computing ' + varid)
if varid == 'THETA':
var = atm.potential_temp(get_var(data, 'T', plev), pres)
elif varid == 'THETA_E':
var = atm.equiv_potential_temp(get_var(data, 'T', plev), pres,
get_var(data, 'QV', plev))
elif varid == 'DSE':
var = atm.dry_static_energy(get_var(data, 'T', plev),
get_var(data, 'H', plev))
elif varid == 'MSE':
var = atm.moist_static_energy(get_var(data, 'T', plev),
get_var(data, 'H', plev),
get_var(data, 'QV', plev))
elif varid == 'VFLXMSE':
Lv = atm.constants.Lv.values
var = data['VFLXCPT'] + data['VFLXPHI'] + data['VFLXQV'] * Lv
var.attrs['units'] = data['VFLXCPT'].attrs['units']
var.attrs['long_name'] = 'Vertically integrated MSE meridional flux'
else:
with xray.open_dataset(datafiles[0]) as ds:
if varid not in ds.data_vars:
varid = varid + str(plev)
var = atm.combine_daily_years(varid, datafiles, years, yearname=yearnm,
subset_dict={'day' : (daymin, daymax)})
var = atm.squeeze(var)
# Make sure year dimension is included for single year
if len(years) == 1 and 'year' not in var.dims:
var = atm.expand_dims(var, yearnm, years[0], axis=0)
# Wrap years for extended day ranges
if daymin < 1 or daymax > 366:
var = wrapyear_all(var, daymin, daymax)
# Convert precip and evap to mm/day
if varid in ['precip', 'PRECTOT', 'EVAP']:
var = atm.precip_convert(var, var.attrs['units'], 'mm/day')
return var
for nm in varnms:
print(nm)
var = atm.subset(databar[nm], {'dayrel' : (-npre, npost)})
lat = atm.get_coord(var, 'lat')
if nm == 'PSI':
var = atm.subset(var, {'lat' : (-25, 10)})
latname = atm.get_coord(var, 'lat', 'name')
pname = atm.get_coord(var, 'plev', 'name')
var_out = var.max(dim=latname).max(dim=pname)
tseries['PSIMAX'] = atm.rolling_mean(var_out, nroll, center=True)
else:
for lat0 in lat_extract:
lat0_str = atm.latlon_labels(lat0, 'lat', deg_symbol=False)
key = nm + '_' + lat0_str
val, ind = atm.find_closest(lat, lat0)
var_out = atm.squeeze(var[:, ind])
tseries[key] = atm.rolling_mean(var_out, nroll, center=True)
# ----------------------------------------------------------------------
# Functions for plotting
fmt_axes = atm.ax_lims_ticks
clear_labels = atm.clear_labels
to_dataset = atm.to_dataset
def contourf_latday(var, clev=None, title='', nc_pref=40, grp=None,
xlims=(-120, 200), xticks=np.arange(-120, 201, 30),
ylims=(-60, 60), yticks=np.arange(-60, 61, 20),
ssn_length=None):
vals = var.values.T
lat = atm.get_coord(var, 'lat')