def show_phaseDiagramPlot(
self,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Generates the Pappu-Das phase diagram (diagram of states), places
this sequence on that plot, and creates it on the screen
INPUT:
--------------------------------------------------------------------------------
label | A label for the point on the phase diagram
title | Plot title (DEFAULT = 'Diagram of states')
legendOn | Boolean for if the figure legend should be displayed or not
xLim | Max value for the x axis (fract. positive charge) (DEFAULT = 1)
yLim | Max value for the y axis (fract. negative charge) (DEFAULT = 1)
fontSize | Size of font for label (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
If the argument getFig is False (which it is by default) then the Uversky plot appears on
the screen. If getFig is set to True then the function returns a matplotlib plt object, which
can be further manipulated.
"""
if getFig:
return plotting.show_single_phasePlot(
self.get_fraction_positive(),
self.get_fraction_negative(),
label,
legendOn,
xLim,
yLim,
fontSize,
getFig)
else:
plotting.show_single_phasePlot(
self.get_fraction_positive(),
self.get_fraction_negative(),
label,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_single_phasePlot(
fp,
fn,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp | Fraction of positive residues
fn | Fraction of negative residues
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing but a plot should be generated on screen
"""
return plotting.show_single_phasePlot(
fp, fn, label, title, legendOn, xLim, yLim, fontSize, getFig)
def show_single_phasePlot(fp,
fn,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp | Fraction of positive residues
fn | Fraction of negative residues
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing but a plot should be generated on screen
"""
return plotting.show_single_phasePlot(fp, fn, label, title, legendOn, xLim,
yLim, fontSize, getFig)
