def selectHierarchical(indexer, topGroup, depth):
i = barIndexer.fromXML(indexer)
strtc = topGroup
ss = map(lambda x: set(i.unfoldSubtrees([strtc],x)), range(depth))
w=map(lambda z: ss[z]-reduce(lambda x,y: x|y, ss[1:z],set()), range(depth))
return " ".join(map(lambda x: " ".join(list(x)),reversed(w)))
parser=createOptionParser()
(options, args) = parser.parse_args()
# Validate command line arguments
# When arguments turns out invalid, print notification and quit script
if not validateOptions(options) or len(args) < 2:
printRed("Invalid command line arguments. Please correct.")
parser.print_help()
exit(1)
cafInfexFilename = args[0]
structuresList = args[1:]
# Atlas indexer is required in all processing cases
indexer = barIndexer.fromXML(cafInfexFilename)
# If recolor only is choosen, do nothing but recoloring:
if options.recolorOnly:
inputVolReader = mergerStructPtsReader(options.inputLabeledVolume)
colorMapper = barIndexerColorMapper(indexer)
colorMapper.SetInput(inputVolReader.GetOutput())
colorMapper.save(options.oColorFilename)
exit(0)
# In all further cases volume integrator will be required,
# define him here:
integrator = volumeIntegrator(indexer, options.workingDir)
# Merging from file list:
if options.mergeList:
