def install(plugins_to_install, import_defaults=True, force=False):
"""
:param plugins_to_install: A list of plugins to install. If the
string "all" is passed then install all plugins listed in the
bauble.pluginmgr.plugins dict that aren't already listed in
the plugin registry.
:param import_defaults: Flag passed to the plugin's install()
method to indicate whether it should import its default data.
:type import_defaults: bool
:param force: Force, don't ask questions.
:type force: book
"""
logger.debug('pluginmgr.install(%s)' % str(plugins_to_install))
if plugins_to_install is 'all':
to_install = plugins.values()
else:
to_install = plugins_to_install
if len(to_install) == 0:
# no plugins to install
return
# sort the plugins by their dependency
depends, unmet = _create_dependency_pairs(to_install)
if unmet != {}:
logger.debug(unmet)
raise BaubleError('unmet dependencies')
to_install = utils.topological_sort(to_install, depends)
if not to_install:
raise BaubleError(
_('The plugins contain a dependency loop. This '
'can happend if two plugins directly or '
'indirectly rely on each other'))
try:
for p in to_install:
logger.debug('install: %s' % p)
p.install(import_defaults=import_defaults)
# issue #28: here we make sure we don't add the plugin to the
# registry twice but we should really update the version number
# in the future when we accept versioned plugins (if ever)
if not PluginRegistry.exists(p):
PluginRegistry.add(p)
except Exception, e:
logger.warning('bauble.pluginmgr.install(): %s' % utils.utf8(e))
raise
def run(self, filenames, metadata, force=False):
'''
A generator method for importing filenames into the database.
This method periodically yields control so that the GUI can
update.
:param filenames:
:param metadata:
:param force: default=False
'''
transaction = None
connection = None
self.__error_exc = BaubleError(_('Unknown Error.'))
try:
# user a contextual connect in case whoever called this
# method called it inside a transaction then we can pick
# up the parent connection and the transaction
connection = metadata.bind.connect()
transaction = connection.begin()
except Exception, e:
msg = _('Error connecting to database.\n\n%s') % \
utils.xml_safe(e)
utils.message_dialog(msg, gtk.MESSAGE_ERROR)
return
def get_plant_query(obj, session):
"""
"""
# as of sqlalchemy 0.5.0 we have to have the order_by(None) here
# so that if we want to union() the statements together later it
# will work properly
q = session.query(Plant).order_by(None)
if isinstance(obj, Family):
return q.join('accession', 'species', 'genus', 'family').\
filter_by(id=obj.id)
elif isinstance(obj, Genus):
return q.join('accession', 'species', 'genus').filter_by(id=obj.id)
elif isinstance(obj, Species):
return q.join('accession', 'species').filter_by(id=obj.id)
elif isinstance(obj, VernacularName):
return q.join('accession', 'species', 'vernacular_names').\
filter_by(id=obj.id)
elif isinstance(obj, Plant):
return q.filter_by(id=obj.id)
elif isinstance(obj, Accession):
return q.join('accession').filter_by(id=obj.id)
elif isinstance(obj, Location):
return q.filter_by(location_id=obj.id)
elif isinstance(obj, Tag):
plants = get_plants_pertinent_to(obj.objects, session)
return q.filter(Plant.id.in_([p.id for p in plants]))
else:
raise BaubleError(_("Can't get plants from a %s") % type(obj).__name__)
{'plugins': utils.utf8(', '.join(sorted(not_registered)))}
utils.message_dialog(utils.xml_safe(msg), type=gtk.MESSAGE_WARNING)
except Exception, e:
logger.warning('unhandled exception %s' % e)
raise
if not registered:
# no plugins to initialize
return
deps, unmet = _create_dependency_pairs(registered)
ordered = utils.topological_sort(registered, deps)
if not ordered:
raise BaubleError(_('The plugins contain a dependency loop. This '
'can happen if two plugins directly or '
'indirectly rely on each other'))
# call init() for each ofthe plugins
for plugin in ordered:
logger.debug('about to invoke init on: %s' % plugin)
try:
plugin.init()
logger.debug('plugin %s initialized' % plugin)
except KeyError, e:
# keep the plugin in the registry so if we find it again we do
# not offer the user the option to reinstall it, something which
# could overwrite data
ordered.remove(plugin)
msg = (_("The %(plugin_name)s plugin is listed in the registry "
"but isn't wasn't found in the plugin directory")
def init(cls):
cls.initialized = True
raise BaubleError("can't init")
def install(cls, *args, **kwargs):
cls.installed = True
raise BaubleError("can't install")
from bauble.error import BaubleError
from bauble.prefs import prefs
import bauble.pluginmgr as pluginmgr
## for sake of testing, just use sqlite3.
uri = 'sqlite:///:memory:'
def init_bauble(uri, create=False):
try:
db.open(uri, verify=False)
except Exception, e:
print >> sys.stderr, e
#debug e
if not bauble.db.engine:
raise BaubleError('not connected to a database')
prefs.init()
pluginmgr.load()
db.create(create)
pluginmgr.init(force=True)
def update_gui():
"""
Flush any GTK Events. Used for doing GUI testing.
"""
import gtk
while gtk.events_pending():
gtk.main_iteration(block=False)