def test_json(setup):
session = setup.session
taxon = Taxon(genus=setup.genus, sp=api.get_random_name())
note = TaxonNote(taxon=taxon, note="this is a test")
syn = TaxonSynonym(taxon=taxon, synonym=taxon)
session.add_all([taxon, note, syn])
session.commit()
taxon_json = taxon.json()
assert "id" in taxon_json
assert "str" in taxon_json
assert taxon_json["genus_id"] == setup.genus.id
taxon_json = taxon.json()
assert "str" in taxon_json
# add all deph=2 fields
note_json = note.json()
assert "id" in note_json
assert "taxon_id" in note_json
assert note_json["taxon_id"] == taxon.id
syn_json = syn.json()
assert "id" in syn_json
assert syn_json["taxon_id"] == taxon.id
assert syn_json["synonym_id"] == taxon.id
session.delete(taxon)
session.commit()
session.close()
def post_taxon():
if not request.json:
bottle.abort(400, 'The request doesn\'t contain a request body')
# create a copy of the request data with only the columns
data = {col: request.json[col] for col in request.json.keys()
if col in taxon_mutable}
# if there isn't a genus_id look for a genus relation on the request data
if not 'genus_id' in data and 'genus' in request.json and isinstance(request.json['genus'], dict) and 'id' in request.json['genus']:
data['genus_id'] = request.json['genus']['id']
# make a copy of the data for only those fields that are columns
taxon = Taxon(**data)
request.session.add(taxon)
request.session.commit()
response.status = 201
return taxon.json()
