def setUpClass(cls):
token = environ.get('KB_AUTH_TOKEN', None)
cls.ctx = {'token': token, 'provenance': [{'service': 'bc_count_contigs',
'method': 'please_never_use_it_in_production', 'method_params': []}],
'authenticated': 1}
config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
cls.cfg = {}
config = ConfigParser()
config.read(config_file)
for nameval in config.items('bc_count_contigs'):
cls.cfg[nameval[0]] = nameval[1]
cls.wsURL = cls.cfg['workspace-url']
cls.wsClient = workspaceService(cls.wsURL, token=token)
cls.serviceImpl = bc_count_contigs(cls.cfg)
def get_config():
if not get_config_file():
return None
retconfig = {}
config = ConfigParser()
config.read(get_config_file())
for nameval in config.items(get_service_name() or 'bc_count_contigs'):
retconfig[nameval[0]] = nameval[1]
return retconfig
config = get_config()
from bc_count_contigs.bc_count_contigsImpl import bc_count_contigs
impl_bc_count_contigs = bc_count_contigs(config)
class JSONObjectEncoder(json.JSONEncoder):
def default(self, obj):
if isinstance(obj, set):
return list(obj)
if isinstance(obj, frozenset):
return list(obj)
if hasattr(obj, 'toJSONable'):
return obj.toJSONable()
return json.JSONEncoder.default(self, obj)
sync_methods = {}
async_run_methods = {}