def batch_for_jointvc(items):
batch_groups = collections.defaultdict(list)
for data in [utils.to_single_data(x) for x in items]:
vc = dd.get_variantcaller(data)
if genotype.is_joint(data):
batches = dd.get_batches(data) or dd.get_sample_name(data)
if not isinstance(batches, (list, tuple)):
batches = [batches]
else:
batches = [dd.get_sample_name(data)]
for b in batches:
data = utils.deepish_copy(data)
data["vrn_file_gvcf"] = data["vrn_file"]
batch_groups[(b, vc)].append(data)
return list(batch_groups.values())
def batch_for_jointvc(items):
batch_groups = collections.defaultdict(list)
for data in [utils.to_single_data(x) for x in items]:
vc = dd.get_variantcaller(data)
if genotype.is_joint(data):
batches = dd.get_batches(data) or dd.get_sample_name(data)
if not isinstance(batches, (list, tuple)):
batches = [batches]
else:
batches = [dd.get_sample_name(data)]
for b in batches:
data = utils.deepish_copy(data)
data["vrn_file_gvcf"] = data["vrn_file"]
batch_groups[(b, vc)].append(data)
return batch_groups.values()
