def test_feature_class(self):
with ScratchDir("."):
os.environ["BEEP_PROCESSING_DIR"] = os.getcwd()
pcycler_run_loc = os.path.join(
TEST_FILE_DIR, "2017-06-30_2C-10per_6C_CH10_structure.json"
)
pcycler_run = loadfn(pcycler_run_loc)
featurizer = DeltaQFastCharge.from_run(
pcycler_run_loc, os.getcwd(), pcycler_run
)
path, local_filename = os.path.split(featurizer.name)
folder = os.path.split(path)[-1]
self.assertEqual(
local_filename,
"2017-06-30_2C-10per_6C_CH10_features_DeltaQFastCharge.json",
)
self.assertEqual(folder, "DeltaQFastCharge")
dumpfn(featurizer, featurizer.name)
processed_run_list = []
processed_result_list = []
processed_message_list = []
processed_paths_list = []
run_id = 1
featurizer_classes = [DeltaQFastCharge, TrajectoryFastCharge]
for featurizer_class in featurizer_classes:
featurizer = featurizer_class.from_run(
pcycler_run_loc, os.getcwd(), pcycler_run
)
if featurizer:
self.assertEqual(featurizer.metadata["channel_id"], 9)
self.assertEqual(featurizer.metadata["protocol"], None)
self.assertEqual(featurizer.metadata["barcode"], None)
dumpfn(featurizer, featurizer.name)
processed_paths_list.append(featurizer.name)
processed_run_list.append(run_id)
processed_result_list.append("success")
processed_message_list.append({"comment": "", "error": ""})
else:
processed_paths_list.append(pcycler_run_loc)
processed_run_list.append(run_id)
processed_result_list.append("incomplete")
processed_message_list.append(
{
"comment": "Insufficient or incorrect data for featurization",
"error": "",
}
)
self.assertEqual(processed_result_list, ["success", "success"])
trajectory = loadfn(
os.path.join(
"TrajectoryFastCharge",
"2017-06-30_2C-10per_6C_CH10_features_TrajectoryFastCharge.json",
)
)
self.assertEqual(trajectory.X.loc[0, "capacity_0.8"], 161)
def test_feature_label_full_model(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR, PROCESSED_CYCLER_FILE)
with ScratchDir('.'):
os.environ['BEEP_ROOT'] = os.getcwd()
pcycler_run = loadfn(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path, os.getcwd(), pcycler_run)
self.assertEqual(featurizer.X.columns.tolist()[4], "charge_time_cycles_1:5")
def test_feature_serialization_for_training(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR, PROCESSED_CYCLER_FILE)
with ScratchDir('.'):
os.environ['BEEP_ROOT'] = os.getcwd()
pcycler_run = loadfn(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path, os.getcwd(), pcycler_run)
dumpfn(featurizer, featurizer.name)
features_reloaded = loadfn(featurizer.name)
self.assertIsInstance(features_reloaded, DeltaQFastCharge)
def test_feature_generation_full_model(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR, PROCESSED_CYCLER_FILE)
with ScratchDir('.'):
os.environ['BEEP_ROOT'] = os.getcwd()
pcycler_run = loadfn(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path, os.getcwd(), pcycler_run)
self.assertEqual(len(featurizer.X), 1) # just test if works for now
# Ensure no NaN values
self.assertFalse(np.any(featurizer.X.isnull()))
def test_feature_class(self):
with ScratchDir('.'):
os.environ['BEEP_PROCESSING_DIR'] = os.getcwd()
pcycler_run_loc = os.path.join(
TEST_FILE_DIR, '2017-06-30_2C-10per_6C_CH10_structure.json')
pcycler_run = loadfn(pcycler_run_loc)
featurizer = DeltaQFastCharge.from_run(pcycler_run_loc,
os.getcwd(), pcycler_run)
path, local_filename = os.path.split(featurizer.name)
folder = os.path.split(path)[-1]
self.assertEqual(
local_filename,
'2017-06-30_2C-10per_6C_CH10_features_DeltaQFastCharge.json')
self.assertEqual(folder, 'DeltaQFastCharge')
dumpfn(featurizer, featurizer.name)
processed_run_list = []
processed_result_list = []
processed_message_list = []
processed_paths_list = []
run_id = 1
featurizer_classes = [DeltaQFastCharge, TrajectoryFastCharge]
for featurizer_class in featurizer_classes:
featurizer = featurizer_class.from_run(pcycler_run_loc,
os.getcwd(),
pcycler_run)
if featurizer:
self.assertEqual(featurizer.metadata['channel_id'], 9)
self.assertEqual(featurizer.metadata['protocol'], None)
self.assertEqual(featurizer.metadata['barcode'], None)
dumpfn(featurizer, featurizer.name)
processed_paths_list.append(featurizer.name)
processed_run_list.append(run_id)
processed_result_list.append("success")
processed_message_list.append({'comment': '', 'error': ''})
else:
processed_paths_list.append(pcycler_run_loc)
processed_run_list.append(run_id)
processed_result_list.append("incomplete")
processed_message_list.append({
'comment':
'Insufficient or incorrect data for featurization',
'error': ''
})
self.assertEqual(processed_result_list, ["success", "success"])
trajectory = loadfn(
os.path.join(
'TrajectoryFastCharge',
'2017-06-30_2C-10per_6C_CH10_features_TrajectoryFastCharge.json'
))
self.assertEqual(trajectory.X.loc[0, 'capacity_0.8'], 161)
def test_feature_label_full_model(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR,
self.processed_cycler_file)
with ScratchDir("."):
os.environ["BEEP_PROCESSING_DIR"] = os.getcwd()
pcycler_run = auto_load_processed(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path,
os.getcwd(), pcycler_run)
self.assertEqual(featurizer.X.columns.tolist()[4],
"charge_time_cycles_1:5")
def test_feature_serialization_for_training(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR,
self.processed_cycler_file)
with ScratchDir("."):
os.environ["BEEP_PROCESSING_DIR"] = os.getcwd()
pcycler_run = auto_load_processed(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path,
os.getcwd(), pcycler_run)
dumpfn(featurizer, featurizer.name)
features_reloaded = loadfn(featurizer.name)
self.assertIsInstance(features_reloaded, DeltaQFastCharge)
def test_feature_serialization(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR, PROCESSED_CYCLER_FILE)
with ScratchDir('.'):
os.environ['BEEP_ROOT'] = os.getcwd()
pcycler_run = loadfn(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path, os.getcwd(), pcycler_run)
dumpfn(featurizer, featurizer.name)
features_reloaded = loadfn(featurizer.name)
self.assertIsInstance(features_reloaded, DeltaQFastCharge)
# test nominal capacity is being generated
self.assertEqual(features_reloaded.X.loc[0, 'nominal_capacity_by_median'], 1.0628421000000001)
def test_feature_serialization(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR,
self.processed_cycler_file)
with ScratchDir("."):
os.environ["BEEP_PROCESSING_DIR"] = os.getcwd()
pcycler_run = auto_load_processed(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path,
os.getcwd(), pcycler_run)
dumpfn(featurizer, featurizer.name)
features_reloaded = loadfn(featurizer.name)
self.assertIsInstance(features_reloaded, DeltaQFastCharge)
# test nominal capacity is being generated
self.assertEqual(
features_reloaded.X.loc[0, "nominal_capacity_by_median"],
1.0628421000000001)
def test_feature_generation_full_model(self):
processed_cycler_run_path = os.path.join(TEST_FILE_DIR,
self.processed_cycler_file)
with ScratchDir("."):
os.environ["BEEP_PROCESSING_DIR"] = os.getcwd()
pcycler_run = auto_load_processed(processed_cycler_run_path)
featurizer = DeltaQFastCharge.from_run(processed_cycler_run_path,
os.getcwd(), pcycler_run)
self.assertEqual(len(featurizer.X),
1) # just test if works for now
# Ensure no NaN values
# print(featurizer.X.to_dict())
self.assertFalse(np.any(featurizer.X.isnull()))
self.assertEqual(
np.round(
featurizer.X.loc[
0, 'intercept_discharge_capacity_cycle_number_91:100'],
6), np.round(1.1050065801818196, 6))