def test_parse_comment_data_string_no_value(self):
comment_data_string = "#data:: entry1 : entry2: key = "
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=comment_data_string)
self.assertListEqual(path, ["entry1", "entry2"])
self.assertEqual(key, "key")
self.assertEqual(value, "")
comment_data_string = "#data:: key = "
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=comment_data_string)
self.assertListEqual(path, [])
self.assertEqual(key, "key")
self.assertEqual(value, "")
def test_parse_comment_data_string_no_key_value(self):
comment_data_string = "#data:: "
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=comment_data_string)
self.assertListEqual(path, [])
self.assertEqual(key, "")
self.assertEqual(value, "")
comment_data_string = "#data:: = "
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=comment_data_string)
self.assertListEqual(path, [])
self.assertEqual(key, "")
self.assertEqual(value, "")
def test_parse_comment_data_string_top_level(self):
comment_data_string = "# data :: key=value"
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=comment_data_string)
self.assertListEqual(path, [])
self.assertEqual(key, "key")
self.assertEqual(value, "value")
comment_data_string = "#data::key = value"
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=comment_data_string)
self.assertListEqual(path, [])
self.assertEqual(key, "key")
self.assertEqual(value, "value")
def test_parse_comment_data_string(self):
data_string = "# data :: fragment : name = scaffold1"
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=data_string)
self.assertEqual(path, ["fragment"])
self.assertEqual(key, "name")
self.assertEqual(value, "scaffold1")
data_string = "# data :: fragment : origin: name = ALLPATHS-LG"
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=data_string)
self.assertEqual(path, ["fragment", "origin"])
self.assertEqual(key, "name")
self.assertEqual(value, "ALLPATHS-LG")
data_string = "# data :: genome : origin: name = ALLPATHS-LG"
path, (key, value) = GRIMMReader.parse_comment_data_string(
comment_data_string=data_string)
self.assertEqual(path, ["genome", "origin"])
self.assertEqual(key, "name")
self.assertEqual(value, "ALLPATHS-LG")