def __init__(self, atlas_name=None):
"""
Brainrender's Atlas class subclasses BrainGlobeAtlas
to add methods to get regions meshes as Actors
and to get a plane at a given point and normal.
:param atlas_name: str, atlas name from brainglobe's atlas API atlases
"""
atlas_name = atlas_name or settings.DEFAULT_ATLAS
BrainGlobeAtlas.__init__(self,
atlas_name=atlas_name,
print_authors=False)
def __init__(self, atlas_name, *args, base_dir=None, **kwargs):
# Create brainglobe atlas
BrainGlobeAtlas.__init__(self, *args, atlas_name=atlas_name, **kwargs)
# Add brainrender paths
Paths.__init__(self, base_dir=base_dir, **kwargs)
self.meshes_folder = (
None # where the .obj mesh for each region is saved
)
# If it's a mouse atlas, add extra functionality
if "Mus musculus" == self.metadata["species"]:
ABA.__init__(self)
def __init__(self, atlas_name, *args, base_dir=None, **kwargs):
# Create brainglobe atlas
BrainGlobeAtlas.__init__(
self, *args, atlas_name=atlas_name, print_authors=False, **kwargs
)
# Add brainrender paths
Paths.__init__(self, base_dir=base_dir, **kwargs)
Enhanced.__init__(self)
# If it's a mouse atlas, add extra functionality
if "Mus musculus" == self.metadata["species"]:
ABA.__init__(self)