def test_loadfile_pdf_with_bad_path(tmp_path, mock_init):
pdf_path = str(tmp_path) + '/pathed_file.pdf'
# (no touch)
with open(u.ROOT + 'examples/sample.bib') as f:
text = f.read()
text = f'pdf: {pdf_path}\n{text}'
bibs = bm.loadfile(text=text)
assert bibs[0].pdf is None
def test_export_home(bibs, mock_init):
my_bibs = [bibs["stodden"], bibs["beaulieu_apj"]]
bm.export(my_bibs, u.BM_BIBFILE)
assert "bm_bibliography.bib" in os.listdir(u.HOME)
with open(u.BM_BIBFILE, "r") as f:
lines = f.readlines()
assert lines[0] == "This file was created by bibmanager\n"
loaded_bibs = bm.loadfile(u.BM_BIBFILE)
assert loaded_bibs == sorted(my_bibs)
def test_loadfile_pdf_with_path(tmp_path, mock_init):
pdf_path = str(tmp_path) + '/pathed_file.pdf'
pathlib.Path(pdf_path).touch()
with open(u.ROOT + 'examples/sample.bib') as f:
text = f.read()
text = f'pdf: {pdf_path}\n{text}'
bibs = bm.loadfile(text=text)
assert bibs[0].pdf == 'pathed_file.pdf'
assert 'pathed_file.pdf' in os.listdir(u.BM_PDF())
assert not os.path.isfile(pdf_path)
def test_loadfile_meta():
with open(u.ROOT + 'examples/sample.bib') as f:
text = f.read()
# prepend meta info before first entry:
text = 'freeze\npdf: file.pdf\n' + text
bibs = bm.loadfile(text=text)
assert bibs[0].pdf == 'file.pdf'
assert bibs[0].freeze is True
assert bibs[1].pdf is None
assert bibs[1].freeze is None
def test_reset_keep_database(capsys, mock_init_sample):
bibfile = u.HOME + "examples/sample.bib"
# Simulate user input:
sys.argv = f"bibm reset {bibfile}".split()
cli.main()
captured = capsys.readouterr()
assert captured.out == f"Initializing new bibmanager database with BibTeX file: '{bibfile}'.\n" \
"Resetting config parameters.\n"
assert set(os.listdir(u.HOME)) == set(
["bm_database.pickle", "bm_bibliography.bib", "config", "examples"])
bibs = bm.loadfile(bibfile)
assert len(bibs) == 17
def test_build_bib_missing(capsys, mock_init):
# Assert screen output:
bm.merge(u.HOME + "examples/sample.bib")
captured = capsys.readouterr()
texfile = u.HOME + "examples/mock_file.tex"
with open(texfile, "w") as f:
f.write(
"\\cite{Astropycollab2013aaAstropy} \\cite{MissingEtal2019}.\n")
missing = lm.build_bib(texfile, u.HOME + "my_file.bib")
captured = capsys.readouterr()
assert captured.out == "References not found:\nMissingEtal2019\n"
# Check content:
np.testing.assert_array_equal(missing, np.array(["MissingEtal2019"]))
bibs = bm.loadfile(u.HOME + "my_file.bib")
assert len(bibs) == 1
assert "Astropycollab2013aaAstropy" in bibs[0].key
def test_build_bib_inplace(mock_init):
bm.merge(u.HOME + "examples/sample.bib")
os.chdir(u.HOME + "examples")
missing = lm.build_bib("sample.tex")
files = os.listdir(".")
assert "texsample.bib" in files
# Now check content:
np.testing.assert_array_equal(missing, np.zeros(0, dtype="U"))
bibs = bm.loadfile("texsample.bib")
assert len(bibs) == 7
keys = [bib.key for bib in bibs]
assert "AASteamHendrickson2018aastex62" in keys
assert "vanderWaltEtal2011numpy" in keys
assert "JonesEtal2001scipy" in keys
assert "Hunter2007ieeeMatplotlib" in keys
assert "PerezGranger2007cseIPython" in keys
assert "MeurerEtal2017pjcsSYMPY" in keys
assert "Astropycollab2013aaAstropy" in keys
def test_merge_bibs(capfd, mock_init):
new = bm.loadfile(u.HOME + "examples/sample.bib")
bm.merge(new=new)
captured = capfd.readouterr()
assert captured.out == "\nMerged 17 new entries.\n"
def test_loadfile_text(mock_init):
with open(u.ROOT + 'examples/sample.bib') as f:
text = f.read()
bibs = bm.loadfile(text=text)
assert len(bibs) == 17
def test_loadfile_bibfile(mock_init):
bibs = bm.loadfile(u.ROOT + 'examples/sample.bib')
assert len(bibs) == 17
