def test_evaluate_and_distributed_evaluate(self):
keras_model = self.create_model()
model = KerasModel(keras_model)
x, y = self.create_training_data()
results_pre = model.evaluate(x, y)
results_after = model.evaluate(x, y, distributed=True)
assert np.square(results_pre["acc"] - results_after["acc Top1Accuracy"]) < 0.000001
assert np.square(results_pre["loss"] - results_after["loss"]) < 0.000001
def test_evaluate_with_ndarray_distributed(self):
keras_model = self.create_model()
model = KerasModel(keras_model)
x, y = self.create_training_data()
results_pre = model.evaluate(x, y, batch_per_thread=1)
model.fit(x, y, batch_size=4, epochs=10)
results_after = model.evaluate(x, y, distributed=True, batch_per_thread=1)
assert results_pre["loss"] > results_after["loss"]
def test_evaluate_with_ndarray(self):
keras_model = self.create_model()
model = KerasModel(keras_model)
x, y = self.create_training_data()
results_pre = model.evaluate(x, y)
model.fit(x, y, batch_size=4, epochs=10)
results_after = model.evaluate(x, y)
assert results_pre["loss"] > results_after["loss"]
def check_dataset(self, create_ds):
seq = tf.keras.Sequential([
tf.keras.layers.Flatten(input_shape=(20, )),
tf.keras.layers.Dense(10, activation="softmax")
])
seq.compile(optimizer=tf.keras.optimizers.RMSprop(),
loss='sparse_categorical_crossentropy',
metrics=['accuracy'])
model = KerasModel(seq)
model.fit(create_ds("train"))
model.predict(create_ds("predict")).collect()
model.evaluate(create_ds("evaluate"))
def test_evaluate_with_dataset(self):
keras_model = self.create_model()
model = KerasModel(keras_model)
x, y = self.create_training_data()
results_pre = model.evaluate(x, y)
dataset = self.create_evaluation_dataset()
results_after = model.evaluate(dataset)
assert np.square(results_pre["acc"] - results_after["acc Top1Accuracy"]) < 0.000001
assert np.square(results_pre["loss"] - results_after["loss"]) < 0.000001
def test_predict_with_ndarray_distributed(self):
keras_model = self.create_model()
model = KerasModel(keras_model)
x, y = self.create_training_data()
results_pre = model.evaluate(x, y)
pred_y = np.argmax(model.predict(x, distributed=True), axis=1)
acc = np.average((pred_y == y))
print(results_pre)
assert np.square(acc - results_pre["acc"]) < 0.000001
def test_predict_with_dataset(self):
keras_model = self.create_model()
model = KerasModel(keras_model)
x, y = self.create_training_data()
results_pre = model.evaluate(x, y)
pred_y = np.argmax(np.array(model.predict(
self.create_predict_dataset()).collect()), axis=1)
acc = np.average((pred_y == y))
assert np.square(acc - results_pre["acc"]) < 0.000001
def test_tfdataset_with_tf_data_dataset(self):
dataset = tf.data.Dataset.from_tensor_slices(
(np.random.randn(102, 28, 28,
1), np.random.randint(0, 10, size=(102, ))))
dataset = dataset.map(lambda feature, label:
(tf.to_float(feature), label))
dataset = TFDataset.from_tf_data_dataset(dataset, batch_size=16)
seq = tf.keras.Sequential([
tf.keras.layers.Flatten(input_shape=(28, 28, 1)),
tf.keras.layers.Dense(10, activation="softmax")
])
seq.compile(optimizer=tf.keras.optimizers.RMSprop(),
loss='sparse_categorical_crossentropy',
metrics=['accuracy'])
model = KerasModel(seq)
model.fit(dataset)
dataset = tf.data.Dataset.from_tensor_slices(
(np.random.randn(102, 28, 28,
1), np.random.randint(0, 10, size=(102, ))))
dataset = dataset.map(lambda feature, label:
(tf.to_float(feature), label))
dataset = TFDataset.from_tf_data_dataset(dataset, batch_per_thread=16)
model.evaluate(dataset)
def test_dataset_without_batch(self):
x = np.random.rand(20, 10)
y = np.random.randint(0, 2, (20))
rdd_x = self.sc.parallelize(x)
rdd_y = self.sc.parallelize(y)
rdd = rdd_x.zip(rdd_y)
dataset = TFDataset.from_rdd(rdd,
features=(tf.float32, [10]),
labels=(tf.int32, []),
names=["features", "labels"],
val_rdd=rdd)
keras_model = self.create_model()
model = KerasModel(keras_model)
self.intercept(
lambda: model.fit(dataset), "The batch_size of TFDataset must be" +
" specified when used in KerasModel fit.")
dataset = TFDataset.from_rdd(
rdd,
features=(tf.float32, [10]),
labels=(tf.int32, []),
names=["features", "labels"],
)
self.intercept(
lambda: model.evaluate(dataset),
"The batch_per_thread of TFDataset must be " +
"specified when used in KerasModel evaluate.")
dataset = TFDataset.from_rdd(
rdd_x,
features=(tf.float32, [10]),
names=["features", "labels"],
)
self.intercept(
lambda: model.predict(dataset),
"The batch_per_thread of TFDataset must be" +
" specified when used in KerasModel predict.")
class KerasEstimator(Estimator):
def __init__(self, keras_model, metrics, model_dir, optimizer):
self.model = KerasModel(keras_model, model_dir)
self.load_checkpoint = False
self.metrics = metrics
self.tf_optimizer = None
self.optimizer = optimizer
from bigdl.orca.learn.optimizers import Optimizer
if self.optimizer is not None and isinstance(self.optimizer,
Optimizer):
self.optimizer = self.optimizer.get_optimizer()
self.log_dir = None
self.app_name = None
self.clip_norm = None
self.clip_min = None
self.clip_max = None
def fit(self,
data,
epochs=1,
batch_size=32,
feature_cols=None,
label_cols=None,
validation_data=None,
session_config=None,
checkpoint_trigger=None,
auto_shard_files=True):
"""
Train this keras model with train data.
:param data: train data. It can be XShards, Spark DataFrame, tf.data.Dataset.
If data is XShards, each partition can be a Pandas DataFrame or a dictionary of
{'x': feature, 'y': label}, where feature(label) is a numpy array or a tuple of
numpy arrays.
If data is tf.data.Dataset, each element is [feature tensor tuple, label tensor
tuple]
:param epochs: number of epochs to train.
:param batch_size: total batch size for each iteration.
:param feature_cols: feature column names if train data is Spark DataFrame or XShards
of Pandas DataFrame.
:param label_cols: label column names if train data is Spark DataFrame or XShards of
Pandas DataFrame.
:param validation_data: validation data. Validation data type should be the same
as train data.
:param session_config: tensorflow session configuration for training.
Should be object of tf.ConfigProto
:param checkpoint_trigger: when to trigger checkpoint during training.
Should be a bigdl.orca.learn.trigger, like EveryEpoch(), SeveralIteration(
num_iterations),etc.
:param auto_shard_files: whether to automatically detect if the dataset is file-based and
and apply sharding on files, otherwise sharding on records. Default is False.
"""
if isinstance(data, DataFrame):
assert feature_cols is not None, \
"feature columns is None; it should not be None in training"
assert label_cols is not None, \
"label columns is None; it should not be None in training"
if isinstance(data, tf.data.Dataset):
assert isinstance(data.element_spec, tuple), \
"If data is tf.data.Dataset, each element should be " \
"(feature tensors, label tensor), where each feature/label tensor can be " \
"either a single tensor or a tuple of tensors"
if validation_data is not None:
assert isinstance(validation_data, tf.data.Dataset), \
"train data and validation data should be both tf.data.Dataset"
assert isinstance(validation_data.element_spec, tuple), \
"If validation_data is tf.data.Dataset, each element should be " \
"(feature tensors, label tensor), where each feature/label tensor can be " \
"either a single tensor or a tuple of tensors"
if isinstance(data, SparkXShards):
if data._get_class_name() == 'pandas.core.frame.DataFrame':
assert feature_cols is not None, \
"feature columns is None; it should not be None in training"
assert label_cols is not None, \
"label columns is None; it should not be None in training"
data, validation_data = process_xshards_of_pandas_dataframe(
data, feature_cols, label_cols, validation_data, "fit")
if checkpoint_trigger is not None:
checkpoint_trigger = Trigger.convert_trigger(checkpoint_trigger)
if is_tf_data_dataset(data):
data = data.map(_standardize_keras_target_data)
validation_data = validation_data.map(
_standardize_keras_target_data)
memory_type = OrcaContext.train_data_store
dataset = to_dataset(data,
batch_size=batch_size,
batch_per_thread=-1,
validation_data=validation_data,
feature_cols=feature_cols,
label_cols=label_cols,
hard_code_batch_size=False,
sequential_order=False,
shuffle=True,
auto_shard_files=auto_shard_files,
memory_type=memory_type)
self.tf_optimizer = TFOptimizer.from_keras(
self.model.model,
dataset,
model_dir=self.model.model_dir,
session_config=session_config,
metrics=self.metrics,
optimizer=self.optimizer)
if self.clip_norm:
self.tf_optimizer.set_gradient_clipping_by_l2_norm(
clip_norm=self.clip_norm)
if self.clip_min and self.clip_max:
self.tf_optimizer.set_constant_gradient_clipping(
self.clip_min, self.clip_max)
if self.load_checkpoint:
self.tf_optimizer.load_checkpoint(self.checkpoint_path,
self.checkpoint_version)
if self.log_dir and self.app_name:
self.tf_optimizer.estimator.set_tensorboard(
self.log_dir, self.app_name)
self.tf_optimizer.optimize(MaxEpoch(epochs),
checkpoint_trigger=checkpoint_trigger)
return self
def predict(
self,
data,
batch_size=4,
feature_cols=None,
auto_shard_files=False,
):
"""
Predict input data
:param data: data to be predicted.
It can be XShards, Spark DataFrame, or tf.data.Dataset.
If data is XShards, each partition can be a Pandas DataFrame or a dictionary of
{'x': feature}, where feature is a numpy array or a tuple of numpy arrays.
If data is tf.data.Dataset, each element is feature tensor tuple
:param batch_size: batch size per thread
:param feature_cols: list of feature column names if input data is Spark DataFrame or
XShards of Pandas DataFrame.
:param auto_shard_files: whether to automatically detect if the dataset is file-based and
and apply sharding on files, otherwise sharding on records. Default is False.
:return: predicted result.
If input data is XShards or tf.data.Dataset, the predict result is also a XShards,
and the schema for each result is: {'prediction': predicted numpy array or
list of predicted numpy arrays}.
If input data is Spark DataFrame, the predict result is a DataFrame which includes
original columns plus 'prediction' column. The 'prediction' column can be
FloatType, VectorUDT or Array of VectorUDT depending on model outputs shape.
"""
if isinstance(data, DataFrame):
assert feature_cols is not None, \
"feature columns is None; it should not be None in prediction"
if isinstance(data, SparkXShards):
if data._get_class_name() == 'pandas.core.frame.DataFrame':
assert feature_cols is not None, \
"feature columns is None; it should not be None in prediction"
data = process_xshards_of_pandas_dataframe(data, feature_cols)
assert not is_tf_data_dataset(data), "tf.data.Dataset currently cannot be used for" \
"estimator prediction"
dataset = to_dataset(
data,
batch_size=-1,
batch_per_thread=batch_size,
validation_data=None,
feature_cols=feature_cols,
label_cols=None,
hard_code_batch_size=False,
sequential_order=True,
shuffle=False,
auto_shard_files=auto_shard_files,
)
predicted_rdd = self.model.predict(dataset, batch_size)
if isinstance(data, DataFrame):
return convert_predict_rdd_to_dataframe(data, predicted_rdd)
elif isinstance(data, SparkXShards):
return convert_predict_rdd_to_xshard(data, predicted_rdd)
else:
return predicted_rdd
def evaluate(self,
data,
batch_size=32,
feature_cols=None,
label_cols=None,
auto_shard_files=False):
"""
Evaluate model.
:param data: evaluation data. It can be XShards, Spark DataFrame, tf.data.Dataset.
If data is XShards, each partition can be a Pandas DataFrame or a dictionary of
{'x': feature, 'y': label}, where feature(label) is a numpy array or a tuple of
numpy arrays.
If data is tf.data.Dataset, each element is [feature tensor tuple, label tensor
tuple]
:param batch_size: batch size per thread.
:param feature_cols: feature_cols: feature column names if train data is Spark DataFrame or
XShards of Pandas DataFrame.
:param label_cols: label column names if train data is Spark DataFrame or XShards
of Pandas DataFrame.
:param auto_shard_files: whether to automatically detect if the dataset is file-based and
and apply sharding on files, otherwise sharding on records. Default is False.
:return: evaluation result as a dictionary of {'metric name': metric value}
"""
if isinstance(data, DataFrame):
assert feature_cols is not None, \
"feature columns is None; it should not be None in evaluation"
assert label_cols is not None, \
"label columns is None; it should not be None in evaluation"
if isinstance(data, SparkXShards):
if data._get_class_name() == 'pandas.core.frame.DataFrame':
assert feature_cols is not None, \
"feature columns is None; it should not be None in evaluation"
assert label_cols is not None, \
"label columns is None; it should not be None in evaluation"
data = process_xshards_of_pandas_dataframe(
data, feature_cols, label_cols)
dataset = to_dataset(data,
batch_size=-1,
batch_per_thread=batch_size,
validation_data=None,
feature_cols=feature_cols,
label_cols=label_cols,
hard_code_batch_size=False,
sequential_order=True,
shuffle=False,
auto_shard_files=auto_shard_files)
return self.model.evaluate(dataset, batch_per_thread=batch_size)
@enable_multi_fs_save
def save_keras_model(self, path, overwrite=True):
"""
Save tensorflow keras model in this estimator.
:param path: keras model save path.
:param overwrite: Whether to silently overwrite any existing file at the target location.
"""
self.model.save_model(path, overwrite=overwrite)
def get_model(self):
"""
Get the trained Keras model
:return: The trained Keras model
"""
return self.model.model
@enable_multi_fs_save
def save(self, model_path, overwrite=True):
"""
Save model to model_path
:param model_path: path to save the trained model.
:param overwrite: Whether to silently overwrite any existing file at the target location.
:return:
"""
self.save_keras_model(model_path, overwrite=overwrite)
@enable_multi_fs_load
def load(self, model_path):
"""
Load existing keras model
:param model_path: Path to the existing keras model.
:return:
"""
self.model = KerasModel.load_model(model_path)
def clear_gradient_clipping(self):
"""
Clear gradient clipping parameters. In this case, gradient clipping will not be applied.
In order to take effect, it needs to be called before fit.
:return:
"""
self.clip_norm = None
self.clip_min = None
self.clip_max = None
def set_constant_gradient_clipping(self, min, max):
"""
Set constant gradient clipping during the training process.
In order to take effect, it needs to be called before fit.
:param min: The minimum value to clip by.
:param max: The maximum value to clip by.
:return:
"""
assert min > 0, "clip value should be larger than 0"
assert min < max, "clip max should be larger than clip min"
self.clip_min = min
self.clip_max = max
def set_l2_norm_gradient_clipping(self, clip_norm):
"""
Clip gradient to a maximum L2-Norm during the training process.
In order to take effect, it needs to be called before fit.
:param clip_norm: Gradient L2-Norm threshold.
:return:
"""
self.clip_norm = clip_norm
@enable_multi_fs_save
def save_keras_weights(self, filepath, overwrite=True, save_format=None):
"""
Save tensorflow keras model weights in this estimator.
:param filepath: keras model weights save path.
:param overwrite: Whether to silently overwrite any existing file at the target location.
:param save_format: Either 'tf' or 'h5'. A `filepath` ending in '.h5' or
'.keras' will default to HDF5 if `save_format` is `None`. Otherwise
`None` defaults to 'tf'.
"""
self.model.save_weights(filepath, overwrite, save_format)
@enable_multi_fs_load
def load_keras_weights(self, filepath, by_name=False):
"""
Save tensorflow keras model in this estimator.
:param filepath: keras model weights save path.
:param by_name: Boolean, whether to load weights by name or by topological
order. Only topological loading is supported for weight files in
TensorFlow format.
"""
self.model.load_weights(filepath, by_name)
def main(max_epoch):
args = parser.parse_args()
cluster_mode = args.cluster_mode
if cluster_mode.startswith("yarn"):
hadoop_conf = os.environ.get("HADOOP_CONF_DIR")
assert hadoop_conf, "Directory path to hadoop conf not found for yarn-client mode. Please " \
"set the environment variable HADOOP_CONF_DIR"
spark_conf = create_spark_conf().set("spark.executor.memory", "5g") \
.set("spark.executor.cores", 2) \
.set("spark.executor.instances", 2) \
.set("spark.driver.memory", "2g")
if cluster_mode == "yarn-client":
_ = init_nncontext(spark_conf,
cluster_mode="yarn-client",
hadoop_conf=hadoop_conf)
else:
_ = init_nncontext(spark_conf,
cluster_mode="yarn-cluster",
hadoop_conf=hadoop_conf)
else:
_ = init_nncontext()
(training_images_data,
training_labels_data) = mnist.read_data_sets("/tmp/mnist", "train")
(testing_images_data,
testing_labels_data) = mnist.read_data_sets("/tmp/mnist", "test")
training_images_data = (training_images_data -
mnist.TRAIN_MEAN) / mnist.TRAIN_STD
testing_images_data = (testing_images_data -
mnist.TRAIN_MEAN) / mnist.TRAIN_STD
model = tf.keras.Sequential([
tf.keras.layers.Flatten(input_shape=(28, 28, 1)),
tf.keras.layers.Dense(64, activation='relu'),
tf.keras.layers.Dense(64, activation='relu'),
tf.keras.layers.Dense(10, activation='softmax'),
])
model.compile(optimizer='rmsprop',
loss='sparse_categorical_crossentropy',
metrics=['accuracy'])
keras_model = KerasModel(model)
keras_model.fit(training_images_data,
training_labels_data,
validation_data=(testing_images_data, testing_labels_data),
epochs=max_epoch,
batch_size=320,
distributed=True)
result = keras_model.evaluate(testing_images_data,
testing_labels_data,
distributed=True,
batch_per_thread=80)
print(result)
# >> [0.08865142822265625, 0.9722]
# the following assert is used for internal testing
assert result['acc Top1Accuracy'] > 0.95
keras_model.save_weights("/tmp/mnist_keras.h5")
def main(max_epoch):
args = parser.parse_args()
cluster_mode = args.cluster_mode
if cluster_mode.startswith("yarn"):
hadoop_conf = os.environ.get("HADOOP_CONF_DIR")
assert hadoop_conf, "Directory path to hadoop conf not found for yarn-client mode. Please " \
"set the environment variable HADOOP_CONF_DIR"
spark_conf = create_spark_conf().set("spark.executor.memory", "5g") \
.set("spark.executor.cores", 2) \
.set("spark.executor.instances", 2) \
.set("spark.executorEnv.HTTP_PROXY", "http://child-prc.intel.com:913") \
.set("spark.executorEnv.HTTPS_PROXY", "http://child-prc.intel.com:913") \
.set("spark.driver.memory", "2g")
if cluster_mode == "yarn-client":
sc = init_nncontext(spark_conf,
cluster_mode="yarn-client",
hadoop_conf=hadoop_conf)
else:
sc = init_nncontext(spark_conf,
cluster_mode="yarn-cluster",
hadoop_conf=hadoop_conf)
else:
sc = init_nncontext()
training_rdd = get_data_rdd("train", sc)
testing_rdd = get_data_rdd("test", sc)
dataset = TFDataset.from_rdd(training_rdd,
features=(tf.float32, [28, 28, 1]),
labels=(tf.int32, []),
batch_size=320,
val_rdd=testing_rdd)
model = tf.keras.Sequential([
tf.keras.layers.Flatten(input_shape=(28, 28, 1)),
tf.keras.layers.Dense(64, activation='relu'),
tf.keras.layers.Dense(64, activation='relu'),
tf.keras.layers.Dense(10, activation='softmax'),
])
model.compile(optimizer=tf.keras.optimizers.RMSprop(),
loss='sparse_categorical_crossentropy',
metrics=['accuracy'])
keras_model = KerasModel(model)
keras_model.fit(dataset, epochs=max_epoch, distributed=True)
eval_dataset = TFDataset.from_rdd(testing_rdd,
features=(tf.float32, [28, 28, 1]),
labels=(tf.int32, []),
batch_per_thread=80)
result = keras_model.evaluate(eval_dataset)
print(result)
# >> [0.08865142822265625, 0.9722]
# the following assert is used for internal testing
assert result['acc Top1Accuracy'] > 0.95
model.save_weights("/tmp/mnist_keras.h5")